ViewGene

Locus Name:
GeneID:
Location:

GeneID:1605
TrivialName: PA14_12770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12770
PAO1 Ortholog Locus:PA3949
Sequence Length:1176
Protein Length:391
Start: 1095605
Stop: 1094430
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07336.1|AE004813_3 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 386/391 (98%), Positives = 388/391 (99%)
Sequence:
ATGGCCGCGGAGGTCCTGAGCCAGGCGGGCGTACGCACGGAAGTGTTCGACGCCATGCCCTCGGTCGGCCGG
AAATTCCTCCTCGCGGGCGTCGGCGGCATGAACATCACCCATGCCGAGGCCAGGGAACAATTCCTCGGCCGC
TATGGCAGGCGCCAGAAGGAAATCGCCGCACTGCTCGGCGAATTCGACGCGGATGCGTTGCGCGCCTGGATC
CACGGCCTGGGTATCGACACCTTCGTCGGCAGTTCCGGCCGGGTGTTCCCCTCCGACATGAAGGCCGCGCCG
TTGCTCCGTGCCTGGCTCAAGCGCCTGCGCGAGCAAGGCGTGCTCATCCACACCCGCTGCCGTTGGCTGGGC
TGGAACGCGGACGGTACGCTGGACATCCAGAGCGCCGCCGAGCGCCTGTCGATACGGGCCGACGCCGTGATC
CTGGCGCTCGGTGGCGGCAGTTGGCAGCGCCTGGGCTCCGACGGCGCCTGGGTGCCCCTGCTGCGGGCCCGC
GGCGTCGAGGTCGAGCCCCTGCGGCCAAGCAATTGCGGTTTCGAGATCGGCGGCTGGAGCGAGCTGTTTCGC
GACAAGTTCTCCGGCGCTCCGGTCAAACCGGTGGCCATGGGACTGGCGGGCGAAACGCCGCGCCAGGGCGAA
TTCGTCGTGACCCGCGACGGTATCGAGGGCAGCCTGGTCTATGCCCTCTCCGCCGCCATCCGCGAACGGATC
GAGGCACAGGGATCGGCCGAAGTATGGCTGGACCTGTTGCCGAACAGGCGTCGCGAGCAGATCGAGGCAGCC
CTGGCTCGCCCGCGCGGCTCCAGGTCGATGGCCAATCACCTGCGCAGCCAGTTGGGCATCGATGGGGTTCGG
GCCGGCCTCCTGCGTGAACTCACCCCCGCCGCCACCTATGCCGAGCCGGCCCGCCTGGCGGCGGCGATCAAG
CGCCTGCCGCTGACGCTGCTGCGCCCGCGTCCGCTGGACGAAGCGATCAGCAGCGCCGGCGGCGTGCGCTTC
GAGGCGCTCGACCGCAACCTGATGCTCGCTGGCTTGCCCGGCGTGTTCTGCGCCGGGGAAATGCTCGACTGG
GAGGCGCCCACCGGCGGCTACCTGTTGACCGCCTGCTTCGCCAGCGGGCGCGTGGCCGGACTCGGCGCGCTG
GCCTGGTTGCGCGGCAGGCGCTAG
Translation:
MAAEVLSQAGVRTEVFDAMPSVGRKFLLAGVGGMNITHAEAREQFLGRYGRRQKEIAALLGEFDADALRAWI
HGLGIDTFVGSSGRVFPSDMKAAPLLRAWLKRLREQGVLIHTRCRWLGWNADGTLDIQSAAERLSIRADAVI
LALGGGSWQRLGSDGAWVPLLRARGVEVEPLRPSNCGFEIGGWSELFRDKFSGAPVKPVAMGLAGETPRQGE
FVVTRDGIEGSLVYALSAAIRERIEAQGSAEVWLDLLPNRRREQIEAALARPRGSRSMANHLRSQLGIDGVR
AGLLRELTPAATYAEPARLAAAIKRLPLTLLRPRPLDEAISSAGGVRFEALDRNLMLAGLPGVFCAGEMLDW
EAPTGGYLLTACFASGRVAGLGALAWLRGRR*
AnnotationID:1614GeneID:1605
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 13:01:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3949
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2081, pfam03486
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|11789 COG2081, COG2081, Predicted flavoproteins [General function prediction only]
Length = 408
Score =  400 bits (1029), Expect = e-112
Identities = 136/396 (34%), Positives = 199/396 (50%), Gaps = 12/396 (3%)
Genomic Context:
Comment:
ReferenceID:3213
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20360
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1605

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2842 PA3949_tr translation of PA3949 391 98.72 99.23 0 1982.0
88660 gb|AAG07336.1|AE004813_3 (AE004813) hypothetical protein PA3949 [Pseudomonas aeruginosa PAO1] 391 98.72 99.23 0 1982.0
88661 gb|AAN70335.1|AE016675_5 (AE016791) conserved hypothetical protein TIGR00275 [Pseudomonas putida KT2440] 413 63.43 74.81 23 1381.0
88662 gb|AAO58109.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 413 62.46 74.33 23 1359.0
88665 emb|CAE36280.1| (BX640426) conserved hypothetical protein [Bordetella parapertussis] 402 61.69 71.64 17 1206.0
GC ORFID: 44607How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3949Glimmer Score:
Start: 3858333Stop: 3859508
Length: 1176
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3949 translation of PA3949Homolog Bit Score 768.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5666 (ORF: BLASTX 551.0), t_PA3949 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGCGGAGGTCCTGAGCCAGGCGGGCGTACGCACGGAAGTGTTCGACGCCATGCCCTCGGTCGGCCGG
AAATTCCTCCTCGCGGGCGTCGGCGGCATGAACATCACCCATGCCGAGGCCAGGGAACAATTCCTCGGCCGC
TATGGCAGGCGCCAGAAGGAAATCGCCGCACTGCTCGGCGAATTCGACGCGGATGCGTTGCGCGCCTGGATC
CACGGCCTGGGTATCGACACCTTCGTCGGCAGTTCCGGCCGGGTGTTCCCCTCCGACATGAAGGCCGCGCCG
TTGCTCCGTGCCTGGCTCAAGCGCCTGCGCGAGCAAGGCGTGCTCATCCACACCCGCTGCCGTTGGCTGGGC
TGGAACGCGGACGGTACGCTGGACATCCAGAGCGCCGCCGAGCGCCTGTCGATACGGGCCGACGCCGTGATC
CTGGCGCTCGGTGGCGGCAGTTGGCAGCGCCTGGGCTCCGACGGCGCCTGGGTGCCCCTGCTGCGGGCCCGC
GGCGTCGAGGTCGAGCCCCTGCGGCCAAGCAATTGCGGTTTCGAGATCGGCGGCTGGAGCGAGCTGTTTCGC
GACAAGTTCTCCGGCGCTCCGGTCAAACCGGTGGCCATGGGACTGGCGGGCGAAACGCCGCGCCAGGGCGAA
TTCGTCGTGACCCGCGACGGTATCGAGGGCAGCCTGGTCTATGCCCTCTCCGCCGCCATCCGCGAACGGATC
GAGGCACAGGGATCGGCCGAAGTATGGCTGGACCTGTTGCCGAACAGGCGTCGCGAGCAGATCGAGGCAGCC
CTGGCTCGCCCGCGCGGCTCCAGGTCGATGGCCAATCACCTGCGCAGCCAGTTGGGCATCGATGGGGTTCGG
GCCGGCCTCCTGCGTGAACTCACCCCCGCCGCCACCTATGCCGAGCCGGCCCGCCTGGCGGCGGCGATCAAG
CGCCTGCCGCTGACGCTGCTGCGCCCGCGTCCGCTGGACGAAGCGATCAGCAGCGCCGGCGGCGTGCGCTTC
GAGGCGCTCGACCGCAACCTGATGCTCGCTGGCTTGCCCGGCGTGTTCTGCGCCGGGGAAATGCTCGACTGG
GAGGCGCCCACCGGCGGCTACCTGTTGACCGCCTGCTTCGCCAGCGGGCGCGTGGCCGGACTCGGCGCGCTG
GCCTGGTTGCGCGGCAGGCGCTAG