ViewGene
Locus Name:
GeneID:
Location:

GeneID:1604
TrivialName: PA14_13070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13070
PAO1 Ortholog Locus:PA3926
Sequence Length:1182
Protein Length:393
Start: 1121725
Stop: 1122906
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07313.1|AE004810_5 (AE004810) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 392/393 (99%), Positives = 392/393 (99%)
Sequence:
ATGAACCGACCTCGAACCGTTATCCGCTTCATCAACGCCGCGCATGTCATCGACCACATGTTCATGCTGATC
TTCCCCGCCGCCGTGCTCGGCATGGCCGGCAGCTTCGACCTCGACTACGCCGGTCTGATCGGCCTGTCGCTG
GGCGGTTTCATCGCCTTCGGCGCCTGTTCGCTGCCGGCCGGCTGGCTGGGCGATACCTGGAGCCGGCGGCGG
ATGATGCTGCTGTTCTTCTTCGGTATCGGCGCCGCCGCACTGCTCACCGGGCTGGCTGGCAGCGTACCGATG
CTGGTGACCGGGCTGACCCTGATCGGGGTATTCGCCGCGATCTACCACCCGGTCGGCACCGCGATGCTGGTG
GCACACGCGGAGAACCGCGGCCGCGAGATCGGCATCAACGGTATGTGGGGTAACCTCGGGGTCGCCTTCGCC
GCGCTGCTTACCGGCTTTCTCACCGCGCACTTCGGTTGGCGTGCGGCGTTCATCCTGCCCGGCGGGGTGGCC
ATCCTGCTCGGCATCGGCTTTTTCTTCTGCGTGCGCGAGGAGCCATCGCCGCACCTGTCGGCCAAGGCCGCG
GCGCGTGGCGAGGACAGCGAGGGTCTGTCGATGCGCCGGGTGTTCGGCGTGCTGGCGCTGGTCACCGCCACC
GGCGGGGTGGTGTTCAACGCCAGCACCGTGACCTACCCGAAGCTGTTCCAGGAGCGCCTGAGCGACTGGCTG
GCGTCGCCGCAGACCCTTGGCGTGGTGGTCAGCCTGGCCTATGCCTTCGGCGCGGTGGCGCAACTGATCATG
GGCCGCCTGATCGATCGCCTGAACCTGAAGTTGCCGTTCGTCTTCCTCACCTTCTGCCAGGTGCCGCTGCTG
CTGGCCCTGGCCTACGGCCACGGCAGCGCAGTGGTACTGTTCGGCGCGCTGTTCATGTTCGCGGTGTTCGGC
CAGGTGACGGTGAACGACGCGATGGTCGCCCACTTCGTCGCGCCGCAGTGGCAGGCGCGGGTCTTCGCCCTG
CGCTATTTCCTGTCGTTCGGCGCCAGCGCGGCGGCGATCCCGATGATCGCCTACCTGGAGCCACGGCAGGGG
CTGCTGGGGTTGTACCTGGTACTGGCGGGCTTCGCCGCGCTGACCTTCGCCGCGGCGCTGGTGTTTCCGCGT
CCGGCGCGCAGCGCCGCGGTGGGCACCTGA
Translation:
MNRPRTVIRFINAAHVIDHMFMLIFPAAVLGMAGSFDLDYAGLIGLSLGGFIAFGACSLPAGWLGDTWSRRR
MMLLFFFGIGAAALLTGLAGSVPMLVTGLTLIGVFAAIYHPVGTAMLVAHAENRGREIGINGMWGNLGVAFA
ALLTGFLTAHFGWRAAFILPGGVAILLGIGFFFCVREEPSPHLSAKAAARGEDSEGLSMRRVFGVLALVTAT
GGVVFNASTVTYPKLFQERLSDWLASPQTLGVVVSLAYAFGAVAQLIMGRLIDRLNLKLPFVFLTFCQVPLL
LALAYGHGSAVVLFGALFMFAVFGQVTVNDAMVAHFVAPQWQARVFALRYFLSFGASAAAIPMIAYLEPRQG
LLGLYLVLAGFAALTFAAALVFPRPARSAAVGT*
AnnotationID:1613GeneID:1604
AnnotatorUID: urbach
Modification Date/Time: 2004-03-22 16:04:42
Gene Name:
Confidence Code:3
GeneProduct:probable MFS transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG1330,COG2271,KOG2533,COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3211




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20358




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1604
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2841
                           PA3926_tr
                           translation of PA3926
                           393
                           99.74
                           99.74
                           0
                           1984.0
     

     
     
88657
                           gb|AAG07313.1|AE004810_5
                           (AE004810) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           393
                           99.74
                           99.74
                           0
                           1984.0
     

     
     
88658
                           dbj|BAC51992.1|
                           (AP005959) major facilitator superfamily transporter [Bradyrhizobium japonicum USDA 110]
                           396
                           44.69
                           59.59
                           9
                           838.0
     

     
     
88659
                           emb|CAE35789.1|
                           (BX640448) putative transport protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           477
                           33.33
                           46.12
                           88
                           687.0
     

     






      

          
GC ORFID: 44606How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3926Glimmer Score: 

          
Start: 3832213Stop: 3831032

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3926 translation of PA3926Homolog Bit Score 768.0

          
Other Homologs:  t_PA3926 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGACCTCGAACCGTTATCCGCTTCATCAACGCCGCGCATGTCATCGACCACATGTTCATGCTGATC 
TTCCCCGCCGCCGTGCTCGGCATGGCCGGCAGCTTCGACCTCGACTACGCCGGTCTGATCGGCCTGTCGCTG 
GGCGGTTTCATCGCCTTCGGCGCCTGTTCGCTGCCGGCCGGCTGGCTGGGCGATACCTGGAGCCGGCGGCGG 
ATGATGCTGCTGTTCTTCTTCGGTATCGGCGCCGCCGCACTGCTCACCGGGCTGGCTGGCAGCGTACCGATG 
CTGGTGACCGGGCTGACCCTGATCGGGGTATTCGCCGCGATCTACCACCCGGTCGGCACCGCGATGCTGGTG 
GCACACGCGGAGAACCGCGGCCGCGAGATCGGCATCAACGGTATGTGGGGTAACCTCGGGGTCGCCTTCGCC 
GCGCTGCTTACCGGCTTTCTCACCGCGCACTTCGGTTGGCGTGCGGCGTTCATCCTGCCCGGCGGGGTGGCC 
ATCCTGCTCGGCATCGGCTTTTTCTTCTGCGTGCGCGAGGAGCCATCGCCGCACCTGTCGGCCAAGGCCGCG 
GCGCGTGGCGAGGACAGCGAGGGTCTGTCGATGCGCCGGGTGTTCGGCGTGCTGGCGCTGGTCACCGCCACC 
GGCGGGGTGGTGTTCAACGCCAGCACCGTGACCTACCCGAAGCTGTTCCAGGAGCGCCTGAGCGACTGGCTG 
GCGTCGCCGCAGACCCTTGGCGTGGTGGTCAGCCTGGCCTATGCCTTCGGCGCGGTGGCGCAACTGATCATG 
GGCCGCCTGATCGATCGCCTGAACCTGAAGTTGCCGTTCGTCTTCCTCACCTTCTGCCAGGTGCCGCTGCTG 
CTGGCCCTGGCCTACGGCCACGGCAGCGCAGTGGTACTGTTCGGCGCGCTGTTCATGTTCGCGGTGTTCGGC 
CAGGTGACGGTGAACGACGCGATGGTCGCCCACTTCGTCGCGCCGCAGTGGCAGGCGCGGGTCTTCGCCCTG 
CGCTATTTCCTGTCGTTCGGCGCCAGCGCGGCGGCGATCCCGATGATCGCCTACCTGGAGCCACGGCAGGGG 
CTGCTGGGGTTGTACCTGGTACTGGCGGGCTTCGCCGCGCTGACCTTCGCCGCGGCGCTGGTGTTTCCGCGT 
CCGGCGCGCAGCGCCGCGGTGGGCACCTGA