ViewGene
Locus Name:
GeneID:
Location:

GeneID:1603
TrivialName: PA14_24080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24080
PAO1 Ortholog Locus:PA3096
Sequence Length:1149
Protein Length:382
Start: 2090660
Stop: 2091808
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06484.1|AE004734_2 (AE004734) general secretion pathway protein L [Pseudomonas aeruginosa PAO1]
Identities = 381/382 (99%), Positives = 381/382 (99%)
Sequence:
ATGAGTGGAGTGAGTGCGCTGTTCCTGCCGCCCGCCAGCACGGCGGGGGCCGATGGGGAACTGGCGGTATGG
TGGGTGCAGGATGGCGAGTGCCGGCGCGCGCCGTTCGTCCAGGCGCTGGCGGAGATCCGCGCGCCCTGGCGG
CTGTACCTGCCGGTGGAGGCGGTGACCGCCTGCGCGGTGAACCTGCCTACGCAGAAGGCGCGCTGGTTGCGC
CAGTCGCTGCCGTTTGCGGTGGAGGAACAACTGGCCGACGATGTCGAGCAGATGCACCTTGCCCTTGGTCCG
GCGCTGGCCGACGGCCGCCACCGGGTATTCGCCGTGCAGCGCACCTGGCTCGCCGCCTGGCTGGCGCTGGCC
GAGGGCGCGGGCAAGGCGCCGGCTTCGCTGCATGTCGATGCCGATTGCCTGCCGGGCGAGGGCAGTTGCCTG
TTCTGGCTGGAAGAGCGCTGGTTGCTCGGCGGCAGCGGCGCCGTACGCCTGGCCTGCGGCAGCGAGGATTGG
CCGGTACTGCGCGACAGTTGCCCGCCGCCGCAGCGGGCCTTCGCCGCGCAGGAGGTGGCGCCCCTGGAGGGG
GTGGAAGTCCAGGCCCTGGCGGGCAATCCGCACGTCTGGCTGAGCGAGCAGCCGCTGGGCACCGACCTGGCC
CAGGCCGAGTTCGCCGCGCGCCAGCAGAGTAGCCAGTGGCGCCGTTGGCGGCCGCTGCTGGGGCTGGTCGGG
CTGTGGCTGGTGTTGCAATGGGGCTTTACCCTGGTCCAGGCCTGGCAGTTGCAGCGCGAAGGCGACCGCTAC
GCGGCGCAGAGCGCAGAGCTCTACCGCCAGTTGTTTCCCGAGGACCGCAAGCTGATCAACCTGCGCGCGCAG
TTCGACCAGCACCTGGCCGACAGCGCCAGCAGCGGCGGCGAGGGCCAGTTGCTCGGCCTGCTTGGCCAGGCC
GCCACGGTGATCGGCGGCGAGCCAACGGTGAGCGTCGAGCAACTGGACTTCAGCGCCGCTCGCGGCGACGTC
GCCCTCCAGGTGCGGGCTCCCGGTTTCGACGTGCTGGAACGGCTGCGTTCGCGTCTCAGCGAGTCCGGGTTG
GCGGTGCAGCTGGGTTCGGCCAGCCGCGATGGCTCGACGGTCAGCGCGCGCCTGGTGATAGGAGGTTGA
Translation:
MSGVSALFLPPASTAGADGELAVWWVQDGECRRAPFVQALAEIRAPWRLYLPVEAVTACAVNLPTQKARWLR
QSLPFAVEEQLADDVEQMHLALGPALADGRHRVFAVQRTWLAAWLALAEGAGKAPASLHVDADCLPGEGSCL
FWLEERWLLGGSGAVRLACGSEDWPVLRDSCPPPQRAFAAQEVAPLEGVEVQALAGNPHVWLSEQPLGTDLA
QAEFAARQQSSQWRRWRPLLGLVGLWLVLQWGFTLVQAWQLQREGDRYAAQSAELYRQLFPEDRKLINLRAQ
FDQHLADSASSGGEGQLLGLLGQAATVIGGEPTVSVEQLDFSAARGDVALQVRAPGFDVLERLRSRLSESGL
AVQLGSASRDGSTVSARLVIGG*
AnnotationID:1612GeneID:1603
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 20:08:00
Gene Name:xcpY
Confidence Code:1
GeneProduct:general secretion pathway protein L
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3297,pfam05134
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC83363.1| (AF092918) outer membrane secretion protein Y [Pseudomonas
           alcaligenes]
          Length = 381

 Score =  431 bits (1108), Expect = e-120








 
Structural Features:
COG3297, PulL, Type II secretory pathway, component PulL 
[Intracellular trafficking and secretion]
CD-Length = 390 residues,  99.7% aligned
Score =  368 bits (947), Expect = 5e-103
Identities = 158/397 (39%), Positives = 203/397 (51%), Gaps = 23/397 (5%)

pfam05134, GspL, General secretion pathway protein L (GspL). 
CD-Length = 357 residues, 100.0% aligned
Score =  233 bits (596), Expect = 2e-62
Identities = 137/360 (38%), Positives = 177/360 (49%), Gaps = 9/360 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20356




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32428




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1603_cdd.html


    		




 
URL:

















    ReferenceID:33451




  
Author/Investigator(s):
        Michel G, Bleves S, Ball G, Lazdunski A, Filloux A.





  
Title:
        Mutual stabilization of the XcpZ and XcpY components of the secretory apparatus in Pseudomonas aeruginosa.




  
PubMed:
        9884230


MedLine:
        




    
Source:
Microbiology. 1998 Dec;144 ( Pt 12):3379-86.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9884230









           
Homologs By Global Alignment 

           

       



     
Gene ID:1603
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2840
                           PA3096_tr
                           translation of PA3096
                           382
                           99.73
                           99.73
                           0
                           1983.0
     

     
     
88654
                           gb|AAG06484.1|AE004734_2
                           (AE004734) general secretion pathway protein L [Pseudomonas aeruginosa PAO1]
                           382
                           99.73
                           99.73
                           0
                           1983.0
     

     
     
88655
                           emb|CAA39644.1|
                           (X56183) XcpY protein [Pseudomonas aeruginosa]
                           382
                           99.21
                           99.21
                           0
                           1970.0
     

     
     
88656
                           gb|AAC83363.1|
                           (AF092918) outer membrane secretion protein Y [Pseudomonas alcaligenes]
                           385
                           57.92
                           68.57
                           7
                           1112.0
     

     






      

          
GC ORFID: 44605How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3096Glimmer Score: 

          
Start: 2863271Stop: 2862123

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3096 translation of PA3096Homolog Bit Score 768.0

          
Other Homologs:  t_PA3096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGGAGTGAGTGCGCTGTTCCTGCCGCCCGCCAGCACGGCGGGGGCCGATGGGGAACTGGCGGTATGG 
TGGGTGCAGGATGGCGAGTGCCGGCGCGCGCCGTTCGTCCAGGCGCTGGCGGAGATCCGCGCGCCCTGGCGG 
CTGTACCTGCCGGTGGAGGCGGTGACCGCCTGCGCGGTGAACCTGCCTACGCAGAAGGCGCGCTGGTTGCGC 
CAGTCGCTGCCGTTTGCGGTGGAGGAACAACTGGCCGACGATGTCGAGCAGATGCACCTTGCCCTTGGTCCG 
GCGCTGGCCGACGGCCGCCACCGGGTATTCGCCGTGCAGCGCACCTGGCTCGCCGCCTGGCTGGCGCTGGCC 
GAGGGCGCGGGCAAGGCGCCGGCTTCGCTGCATGTCGATGCCGATTGCCTGCCGGGCGAGGGCAGTTGCCTG 
TTCTGGCTGGAAGAGCGCTGGTTGCTCGGCGGCAGCGGCGCCGTACGCCTGGCCTGCGGCAGCGAGGATTGG 
CCGGTACTGCGCGACAGTTGCCCGCCGCCGCAGCGGGCCTTCGCCGCGCAGGAGGTGGCGCCCCTGGAGGGG 
GTGGAAGTCCAGGCCCTGGCGGGCAATCCGCACGTCTGGCTGAGCGAGCAGCCGCTGGGCACCGACCTGGCC 
CAGGCCGAGTTCGCCGCGCGCCAGCAGAGTAGCCAGTGGCGCCGTTGGCGGCCGCTGCTGGGGCTGGTCGGG 
CTGTGGCTGGTGTTGCAATGGGGCTTTACCCTGGTCCAGGCCTGGCAGTTGCAGCGCGAAGGCGACCGCTAC 
GCGGCGCAGAGCGCAGAGCTCTACCGCCAGTTGTTTCCCGAGGACCGCAAGCTGATCAACCTGCGCGCGCAG 
TTCGACCAGCACCTGGCCGACAGCGCCAGCAGCGGCGGCGAGGGCCAGTTGCTCGGCCTGCTTGGCCAGGCC 
GCCACGGTGATCGGCGGCGAGCCAACGGTGAGCGTCGAGCAACTGGACTTCAGCGCCGCTCGCGGCGACGTC 
GCCCTCCAGGTGCGGGCTCCCGGTTTCGACGTGCTGGAACGGCTGCGTTCGCGTCTCAGCGAGTCCGGGTTG 
GCGGTGCAGCTGGGTTCGGCCAGCCGCGATGGCTCGACGGTCAGCGCGCGCCTGGTGATAGGAGGTTGA