ViewGene

Locus Name:
GeneID:
Location:

GeneID:1601
TrivialName: PA14_37830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37830
PAO1 Ortholog Locus:PA2062
Sequence Length:1182
Protein Length:393
Start: 3374722
Stop: 3373541
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05450.1|AE004633_1 (AE004633) probable pyridoxal-phosphate dependent enzyme [Pseudomonas aeruginosa PAO1]
Identities = 392/393 (99%), Positives = 392/393 (99%)
Sequence:
ATGAGTTCGTTACCGTTGTACTTCGATTACGCCGCCACCACGCCCGTGGACGAGCGCGTGATCCGGGCCATG
GTGGAGTGTCTCGGCTACCAGGCGTGTTTTGGCAATCCCGCGTCGAAttTcCATGCCTACGGCCGCCAGGCG
CGGCGGGcAGTGGAGCGGGCCAGGGAGCAGGTGGCCGCGCTGGTCGGCGCCAGCGCCGGGCAGATCGTCTGG
ACTTCCGGCGCCACCGAATCCAACAACCTGGCCCTCAAGGGCGTGGCCCAGGCGCTGGACGCACCCGGCCAC
CTGATCACCAGTCGCCTGGAGCACAAGGCGGTGCTGGACACCGTGCAGCAACTCGCCGATGACGGCTGGAGC
GTGACCTGGCTGGCGCCCGGCACCGATGGCCTGATCCGGCCGGAACAGGTGGAGGCGGCCTGGCGCGCCGAT
ACCCGTCTGGTGTCGCTGATGCGGGTCAACAACGAACTCGGCACCCTGACCGACATCGCCGCCATCGGCGAA
CGGGTGCGCGAGCGCGGCGCGCTGTTCCACGTCGACGCGGCGCAGGCCAGCGGCAAGGTGGCGATCGACCTG
GGCCGCCTGGCGGTGGACTTGATGTCGTTCTCCGCACACAAGACCTACGGGCCCAAGGGCATCGGCGCGTTG
TACGTCGGGCCGCGCGCCGAGCGGCGGCTGAAGGCGCAGATCCACGGCGGCGGACACGAGCAGGGCCTGCGT
TCCGGGACCCTGGCGACCCACCAGATCGTCGGTATGGGCGAGGCCTTCGCCCTCGCCGGCGAGCTTTTCGAG
GAGGAGGGCAGGCGCATCGCCGGACTCCAGCGGCGTCTGCTGGAGGGGCTGGCGCAGATCGACGGCTGGCGC
CTGAACGGCAGCGCCGACGCACGCATCGCGCATACCCTGAACCTGACCTTCGACAACCCGGCCTTTGTCCCC
CAGGCACTGGAGTCCAGCCTGGCGGTGTCCAGCACCTCGGCCTGCAACTCGGCGCGGCCGGCGCCGTCCCAC
GTGCTTCTCGCCCTCGGCcAcgaTGCcgcCAGCGCtgGCcgcAGCGTCCGCCtGagccTCGGTCGCTACACC
CGCGaGgCcGACGTCGACGCGGCGGTGGCCGCCCTCAAGGCCGCGGCGGATAGTGGCGCGCCGGCGTGGCAG
CCGTTCCTCGGGGTATCCAGGGCAGGCTGA
Translation:
MSSLPLYFDYAATTPVDERVIRAMVECLGYQACFGNPASNFHAYGRQARRAVERAREQVAALVGASAGQIVW
TSGATESNNLALKGVAQALDAPGHLITSRLEHKAVLDTVQQLADDGWSVTWLAPGTDGLIRPEQVEAAWRAD
TRLVSLMRVNNELGTLTDIAAIGERVRERGALFHVDAAQASGKVAIDLGRLAVDLMSFSAHKTYGPKGIGAL
YVGPRAERRLKAQIHGGGHEQGLRSGTLATHQIVGMGEAFALAGELFEEEGRRIAGLQRRLLEGLAQIDGWR
LNGSADARIAHTLNLTFDNPAFVPQALESSLAVSSTSACNSARPAPSHVLLALGHDAASAGRSVRLSLGRYT
READVDAAVAALKAAADSGAPAWQPFLGVSRAG*
AnnotationID:1610GeneID:1601
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 17:05:47
Gene Name:
Confidence Code:3
GeneProduct:putative pyridoxal-phosphate dependent enzyme
Cell Localization:()
Synonyms:iscS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative cysteine sulfinate desulfinase
Functional Category Confidence Code:5
COGs:COG1104
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68047.1|AE016437_4 (AE016783) cysteine desulfurase [Pseudomonas putida KT2440]
          Length = 405

 Score =  484 bits (1245), Expect = e-136
 Identities = 257/384 (66%), Positives = 293/384 (76%), Gaps = 1/384 (0%)

>gb|AAG07201.1|AE004799_7 (AE004799) L-cysteine desulfurase (pyridoxal phosphate-dependent)
           [Pseudomonas aeruginosa PAO1]
          Length = 404

 Score =  394 bits (1013), Expect = e-109
 Identities = 220/392 (56%), Positives = 269/392 (68%), Gaps = 13/392 (3%)

>gb|AAO08961.1|AE016798_121 (AE016798) Cysteine sulfinate desulfinase; Cysteine desulfurase
           [Vibrio vulnificus CMCP6]
          Length = 404

 Score =  370 bits (950), Expect = e-102
 Identities = 205/391 (52%), Positives = 266/391 (68%), Gaps = 11/391 (2%)

Structural Features:
COG1104, NifS, Cysteine sulfinate desulfinase /
cysteine desulfurase and related enzymes 
[Amino acid transport and metabolism]
CD-Length = 386 residues,  97.4% aligned
Score =  432 bits (1113), Expect = 3e-122
Identities = 194/381 (50%), Positives = 247/381 (64%), Gaps = 12/381 (3%)

Genomic Context:
Comment:
ReferenceID:3205
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20352
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32643
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1601_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1601

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2834 PA2062_tr translation of PA2062 393 99.74 99.74 0 1983.0
88368 gb|AAG05450.1|AE004633_1 (AE004633) probable pyridoxal-phosphate dependent enzyme [Pseudomonas aeruginosa PAO1] 393 99.74 99.74 0 1983.0
88371 gb|AAO53818.1| (AE016856) cysteine desulfurase [Pseudomonas syringae pv. tomato str. DC3000] 398 63.06 69.59 15 1178.0
88370 gb|AAO56913.1| (AE016868) cysteine desulfurase [Pseudomonas syringae pv. tomato str. DC3000] 398 62.56 73.11 10 1187.0
88369 gb|AAN68047.1|AE016437_4 (AE016783) cysteine desulfurase [Pseudomonas putida KT2440] 415 61.92 70.60 32 1247.0
GC ORFID: 44603How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2062Glimmer Score:
Start: 1579191Stop: 1580372
Length: 1182
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2062 translation of PA2062Homolog Bit Score 768.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3072 (ORF: BLASTX 460.0), psyr_15may02_Scaffold9_revised_gene8088 (ORF: BLASTX 452.0), psyr_15may02_Scaffold3_revised_gene4517 (ORF: BLASTX 397.0), t_PA3814 (ORF: BLASTX 394.0), t_PA2062 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTTCGTTACCGTTGTACTTCGATTACGCCGCCACCACGCCCGTGGACGAGCGCGTGATCCGGGCCATG
GTGGAGTGTCTCGGCTACCAGGCGTGTTTTGGCAATCCCGCGTCGAAttTcCATGCCTACGGCCGCCAGGCG
CGGCGGGcAGTGGAGCGGGCCAGGGAGCAGGTGGCCGCGCTGGTCGGCGCCAGCGCCGGGCAGATCGTCTGG
ACTTCCGGCGCCACCGAATCCAACAACCTGGCCCTCAAGGGCGTGGCCCAGGCGCTGGACGCACCCGGCCAC
CTGATCACCAGTCGCCTGGAGCACAAGGCGGTGCTGGACACCGTGCAGCAACTCGCCGATGACGGCTGGAGC
GTGACCTGGCTGGCGCCCGGCACCGATGGCCTGATCCGGCCGGAACAGGTGGAGGCGGCCTGGCGCGCCGAT
ACCCGTCTGGTGTCGCTGATGCGGGTCAACAACGAACTCGGCACCCTGACCGACATCGCCGCCATCGGCGAA
CGGGTGCGCGAGCGCGGCGCGCTGTTCCACGTCGACGCGGCGCAGGCCAGCGGCAAGGTGGCGATCGACCTG
GGCCGCCTGGCGGTGGACTTGATGTCGTTCTCCGCACACAAGACCTACGGGCCCAAGGGCATCGGCGCGTTG
TACGTCGGGCCGCGCGCCGAGCGGCGGCTGAAGGCGCAGATCCACGGCGGCGGACACGAGCAGGGCCTGCGT
TCCGGGACCCTGGCGACCCACCAGATCGTCGGTATGGGCGAGGCCTTCGCCCTCGCCGGCGAGCTTTTCGAG
GAGGAGGGCAGGCGCATCGCCGGACTCCAGCGGCGTCTGCTGGAGGGGCTGGCGCAGATCGACGGCTGGCGC
CTGAACGGCAGCGCCGACGCACGCATCGCGCATACCCTGAACCTGACCTTCGACAACCCGGCCTTTGTCCCC
CAGGCACTGGAGTCCAGCCTGGCGGTGTCCAGCACCTCGGCCTGCAACTCGGCGCGGCCGGCGCCGTCCCAC
GTGCTTCTCGCCCTCGGCcAcgaTGCcgcCAGCGCtgGCcgcAGCGTCCGCCtGagccTCGGTCGCTACACC
CGCGaGgCcGACGTCGACGCGGCGGTGGCCGCCCTCAAGGCCGCGGCGGATAGTGGCGCGCCGGCGTGGCAG
CCGTTCCTCGGGGTATCCAGGGCAGGCTGA