ViewGene
Locus Name:
GeneID:
Location:

GeneID:1600
TrivialName: PA14_38750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38750
PAO1 Ortholog Locus:PA1991
Sequence Length:1164
Protein Length:387
Start: 3457216
Stop: 3456053
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05379.1|AE004625_9 (AE004625) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 386/387 (99%), Positives = 387/387 (100%)
Sequence:
ATGAGCCACGACCTCAGCCAACTGCGTAAATTCGTCTCGCCCGAGATCATCTTCGGCGCCGGCTGCCGGCAC
AGCGTCGCCAACTACGTGAAGACCTTCGGTGCGCGCAAGGTCCTGCTGGTCTCCGACCCCGGCGTGCTCGCC
GCCGGCTGGGTCGCCGACATCCAGGCAAGCCTGGAGGGACAGGGCATCGACTACTGCCTGTATACCGACGTT
TCGCCCAACCCCCGGGTCGACGAGGTGATGCTCGGCGCCGAGTTCTATCGCAGCGAGGGCTGCAACGTGATC
GTCGCGGTGGGCGGCGGCAGCCCGATGGATTGCGCCAAGGGCATCGGCATCGTCGCCGCCCATGGCCGCAGC
ATCCTCGAGTTCGAAGGCGTCGACCGGCTGCGGGTGCCGAGTCCGCCGCTGATCCTGATCCCGACCACCGCC
GGGACTTCGGCGGACGTCTCGCAGTTCGTGATCATTTCCAACCAGGACGAGCGCATGAAGTTCTCCGTGGTG
AGCAAGGCGGTTGTGCCTGACGTCTCGCTGATCGACCCGGAAACCACGTTGACCATGGATCCCTTCCTTTCG
GCCTGTACCGGCATCGATGCACTGGTACACGCCATCGAGGCGTTCGTCTCCACCGGCCACGGGCCGCTGACC
GATCCCCACGCGCTGGAAGCGATGCGCCTGATCGATGGCAACCTGGTACAGATGATCGCCAATCCCGGCGAC
ATCTCCCTGCGCGAGAAGATCATGCTCGGGAGCATGCAGGCCGGGCTGGCCTTCTCCAACGCCATCCTCGGC
GCGGTGCATGCCATGTCGCACAGCCTCGGCGGCTATCTCGACCTGCCCCACGGCCTGTGCAACGCGGCGCTG
GTCGAACACGTGGTGGCGTTCAACTACAGCGCCGCGCCGGAACGCTTCAAGGTGATCGCCGAGACCTTCGGC
ATCGATTGCCGCGGTCTGACCCAGGGGCAGGTCCGCCAGCGCCTGGTGGACCACCTGATCGCCTTCAAGCAC
GCCGTGGGTTTCCACGAGAGCCTCGCCCTGCACGGGGTCGGCAGCTCCGACATTCCTTTCCTCTCGCGCCAC
GCGATGCAGGACCCGTGCATCCTTACCAACCCGCGCGAGTCGAGCCAGCGCGATGTCGAGGTGGTCTATGGC
GAGGCCCTCTGA
Translation:
MSHDLSQLRKFVSPEIIFGAGCRHSVANYVKTFGARKVLLVSDPGVLAAGWVADIQASLEGQGIDYCLYTDV
SPNPRVDEVMLGAEFYRSEGCNVIVAVGGGSPMDCAKGIGIVAAHGRSILEFEGVDRLRVPSPPLILIPTTA
GTSADVSQFVIISNQDERMKFSVVSKAVVPDVSLIDPETTLTMDPFLSACTGIDALVHAIEAFVSTGHGPLT
DPHALEAMRLIDGNLVQMIANPGDISLREKIMLGSMQAGLAFSNAILGAVHAMSHSLGGYLDLPHGLCNAAL
VEHVVAFNYSAAPERFKVIAETFGIDCRGLTQGQVRQRLVDHLIAFKHAVGFHESLALHGVGSSDIPFLSRH
AMQDPCILTNPRESSQRDVEVVYGEAL*
AnnotationID:1609GeneID:1600
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:25
Gene Name:
Confidence Code:3
GeneProduct:putative iron-containing alcohol dehydrogenase
Cell Localization:()
Synonyms:PA1991
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1454,pfam00465
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68290.1|AE016463_4 (AE016784) alcohol dehydrogenase, iron-containing [Pseudomonas
           putida KT2440]
          Length = 387

 Score =  675 bits (1741), Expect = 0.0
 Identities = 334/387 (86%), Positives = 357/387 (92%)

>gb|AAB85481.1| (AE000872) 1,3-propanediol dehydrogenase [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 341

 Score =  343 bits (880), Expect = 1e-93
 Identities = 174/347 (50%), Positives = 241/347 (69%), Gaps = 6/347 (1%)

>gb|AAM32465.1| (AE013525) Iron-containing alcohol dehydrogenase [Methanosarcina
           mazei Goe1]
          Length = 424

 Score =  303 bits (777), Expect = 9e-82
 Identities = 157/378 (41%), Positives = 229/378 (60%), Gaps = 1/378 (0%)






 
Structural Features:
COG1454, EutG, Alcohol dehydrogenase, class IV [Energy production and conversion]
CD-Length = 377 residues,  98.9% aligned
Score =  419 bits (1079), Expect = 2e-118
Identities = 152/377 (40%), Positives = 233/377 (61%), Gaps = 4/377 (1%)

pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
CD-Length = 365 residues,  99.7% aligned
Score =  326 bits (836), Expect = 4e-90
Identities = 134/366 (36%), Positives = 205/366 (56%), Gaps = 2/366 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20350




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32736




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1600_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1600
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2833
                           PA1991_tr
                           translation of PA1991
                           387
                           99.74
                           99.99
                           0
                           1984.0
     

     
     
88358
                           gb|AAG05379.1|AE004625_9
                           (AE004625) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
                           387
                           99.74
                           99.99
                           0
                           1984.0
     

     
     
88359
                           gb|AAN68290.1|AE016463_4
                           (AE016784) alcohol dehydrogenase, iron-containing [Pseudomonas putida KT2440]
                           387
                           86.30
                           92.24
                           0
                           1741.0
     

     
     
88360
                           gb|AAB85481.1|
                           (AE000872) 1,3-propanediol dehydrogenase [Methanothermobacter thermautotrophicus str. Delta H]
                           387
                           44.96
                           62.27
                           46
                           884.0
     

     
     
88364
                           gb|AAQ60398.1|
                           (AE016919) probable alcohol dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           387
                           39.53
                           58.39
                           10
                           712.0
     

     






      

          
GC ORFID: 44602How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1991Glimmer Score: 

          
Start: 1496695Stop: 1497858

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1991 translation of PA1991Homolog Bit Score 768.0

          
Other Homologs:  t_PA1991 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCACGACCTCAGCCAACTGCGTAAATTCGTCTCGCCCGAGATCATCTTCGGCGCCGGCTGCCGGCAC 
AGCGTCGCCAACTACGTGAAGACCTTCGGTGCGCGCAAGGTCCTGCTGGTCTCCGACCCCGGCGTGCTCGCC 
GCCGGCTGGGTCGCCGACATCCAGGCAAGCCTGGAGGGACAGGGCATCGACTACTGCCTGTATACCGACGTT 
TCGCCCAACCCCCGGGTCGACGAGGTGATGCTCGGCGCCGAGTTCTATCGCAGCGAGGGCTGCAACGTGATC 
GTCGCGGTGGGCGGCGGCAGCCCGATGGATTGCGCCAAGGGCATCGGCATCGTCGCCGCCCATGGCCGCAGC 
ATCCTCGAGTTCGAAGGCGTCGACCGGCTGCGGGTGCCGAGTCCGCCGCTGATCCTGATCCCGACCACCGCC 
GGGACTTCGGCGGACGTCTCGCAGTTCGTGATCATTTCCAACCAGGACGAGCGCATGAAGTTCTCCGTGGTG 
AGCAAGGCGGTTGTGCCTGACGTCTCGCTGATCGACCCGGAAACCACGTTGACCATGGATCCCTTCCTTTCG 
GCCTGTACCGGCATCGATGCACTGGTACACGCCATCGAGGCGTTCGTCTCCACCGGCCACGGGCCGCTGACC 
GATCCCCACGCGCTGGAAGCGATGCGCCTGATCGATGGCAACCTGGTACAGATGATCGCCAATCCCGGCGAC 
ATCTCCCTGCGCGAGAAGATCATGCTCGGGAGCATGCAGGCCGGGCTGGCCTTCTCCAACGCCATCCTCGGC 
GCGGTGCATGCCATGTCGCACAGCCTCGGCGGCTATCTCGACCTGCCCCACGGCCTGTGCAACGCGGCGCTG 
GTCGAACACGTGGTGGCGTTCAACTACAGCGCCGCGCCGGAACGCTTCAAGGTGATCGCCGAGACCTTCGGC 
ATCGATTGCCGCGGTCTGACCCAGGGGCAGGTCCGCCAGCGCCTGGTGGACCACCTGATCGCCTTCAAGCAC 
GCCGTGGGTTTCCACGAGAGCCTCGCCCTGCACGGGGTCGGCAGCTCCGACATTCCTTTCCTCTCGCGCCAC 
GCGATGCAGGACCCGTGCATCCTTACCAACCCGCGCGAGTCGAGCCAGCGCGATGTCGAGGTGGTCTATGGC 
GAGGCCCTCTGA