ViewGene

Locus Name:
GeneID:
Location:

GeneID: 160

TrivialName: PA14_60190

AnnotatorUID: danlee

Modification Date/Time: 2006-04-14 15:03:13

LocusName: PA14_60190

PAO1 Ortholog Locus: PA4542

Sequence Length: 2565

Protein Length: 854

Start: 5362439

Stop: 5359875

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP81264.1| (AY273871) ClpB [Pseudomonas aeruginosa] Identities = 854/854 (100%), Positives = 854/854 (100%)

Sequence:

ATGCGAATAGACCGTTTGACCAGCAAGCTGCAACTGGCGCTCTCCGACGCCCAGTCCCTGGCCGTTGGCCAT
GACCATCCGGCCATCGAGCCGGTGCACCTGCTTTCCGCCCTGCTCGAGCAGCAAGGCGGTTCGATCAAGCCC
CTGCTGATGCAGGTCGGCTTCGATATCGCCGCCCTGCGCAGCGGCCTCAACAAAGAACTCGACGCGCTGCCG
AAGATCCAGAGCCCGACCGGCGACGTGAACCTGTCCCAGGATCTCGCACGCCTGCTCAACCAGGCTGACCGC
CTGGCCCAGCAGAAGGGCGACCAGTTCATCTCCAGCGAGCTGGTATTGCTGGCCGCGATGGACGAGAACACC
AGGCTCGGCAAGCTGCTGCTCGGCCAGGGCGTGTCGCGCAAGGCGCTGGAGAATGCCGTGGCCAACCTGCGT
GGCGGCGAAGCGGTGAACGACCCGAACGTCGAGGAGTCGCGCCAGGCGCTGGACAAGTACACCGTCGACATG
ACCAAGCGCGCCGAGGAAGGCAAGCTCGACCCGGTGATCGGTCGCGACGACGAGATCCGCCGGACCATCCAG
GTCCTGCAGCGGCGGACCAAGAACAACCCGGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCATCGTC
GAGGGCCTGGCCCAGCGCATCATCAACGGCGAAGTGCCGGACGGCCTCAAGGACAAGCGCCTGCTGGCCCTG
GACATGGGGGCGCTGATCGCCGGTGCCAAGTTCCGCGGCGAGTTCGAGGAACGCCTGAAGGCGGTCCTCAAC
GAACTGGGCAAGCAGGAAGGCCGGGTCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAG
GCGGAAGGTGCCATGGACGCCGGCAACATGCTCAAGCCGGCTCTGGCGCGCGGCGAGCTGCACTGCGTCGGT
GCTACTACCCTCGACGAGTATCGCCAGTACATCGAGAAGGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTG
CTGGTGGACGAACCGAGCGAGGAAGACACCATCGCCATCCTCCGTGGCCTCAAGGAACGCTATGAAGTGCAC
CACGGGGTGAGCATCACCGACGGCGCGATCATCGCCGCGGCCAAGCTGTCGCACCGCTACATCACCGATCGG
CAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCCGCCAGCCGCATCCGCATGGAGATCGACTCCAAG
CCGGAGGAACTGGATCGTCTCGACCGTCGCCTGATCCAGCTGAAGATCGAGCGCGAGGCGCTGAAGAAGGAA
GACGACGAAGCCACCAGGAAGCGCCTGGCCAAGCTGGAGGAGGATATCGTCAAGCTCGAGCGCGAATACGCC
GACCTCGAGGAGATCTGGAAGTCCGAGAAGGCCGAGGTGCAGGGCTCGGCGCAGATCCAGCAGAAGATCGAG
CAGGCCAAGCAGGAGATGGAGGCGGCGCGGCGCAAGGGCGACCTCGAGAGCATGGCGCGCATCCAGTACCAG
ACCATCCCGGACCTGGAACGCAGCCTGCAGATGGTCGACCAGCACGGCAAGACCGAGAACCAGTTGCTGCGC
AACAAGGTGACCGACGAGGAAATCGCCGAAGTGGTTTCCAAGTGGACCGGTATCCCGGTGTCGAAGATGCTC
GAGGGCGAGCGCGAGAAGCTGCTGCGCATGGAGCAGGAGCTGCATCGGCGAGTGATCGGCCAGGACGAGGCG
GTAGTCGCCGTGTCCAACGCCGTGCGCCGTTCGCGCGCCGGCCTCGCCGATCCGAACCGGCCGAGCGGCTCG
TTCCTCTTCCTCGGCCCGACCGGGGTGGGCAAGACCGAGTTGTGCAAGGCGCTGGCCGAGTTCCTCTTCGAT
ACCGAGGAGGCGCTGGTGCGGATAGATATGTCCGAGTTCATGGAGAAACACTCGGTGGCCCGCCTGATCGGC
GCGCCTCCGGGCTACGTCGGCTTCGAGGAAGGCGGCTACCTGACCGAGGCGATCCGCCGCAAGCCCTACTCG
GTGGTGCTGCTGGACGAGGTGGAGAAGGCCCATCCGGATGTATTCAACATTCTCCTCCAGGTGCTCGAGGAC
GGACGCCTGACCGACAGTCACGGGCGTACGGTGGACTTCCGCAACACCGTGGTGGTGATGACCTCCAACCTC
GGTTCGGCGCAGATCCAGGAGCTGGCCGGCGACCGCGAGGCGCAACGTGCCGCAGTGATGGACGCGGTCAAT
GCGCACTTCCGTCCGGAATTCATCAACCGGATCGACGAAGTGGTGGTGTTCGAGCCGCTGGCTCGCGAGCAG
ATCGCCGGCATCGCCGAGATCCAGCTCGGTCGCCTGCGCAAGCGCCTGGCCGAGCGCGAGCTGAGCCTGGAA
CTGAGCCAGGAGGCGCTGGACAAGCTGATTGCCGTCGGCTTCGACCCGGTCTATGGCGCACGCCCGCTGAAG
CGGGCCATCCAGCGCTGGATCGAGAACCCGCTGGCGCAACTGATCCTGGCCGGCAAATTCGCGCCGGGTGCC
AGTATCTCGGCGAAGGTGGAAGGCGACGAGATCGTCTTCGCCTGA

Translation:

MRIDRLTSKLQLALSDAQSLAVGHDHPAIEPVHLLSALLEQQGGSIKPLLMQVGFDIAALRSGLNKELDALP
KIQSPTGDVNLSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENTRLGKLLLGQGVSRKALENAVANLR
GGEAVNDPNVEESRQALDKYTVDMTKRAEEGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV
EGLAQRIINGEVPDGLKDKRLLALDMGALIAGAKFRGEFEERLKAVLNELGKQEGRVILFIDELHTMVGAGK
AEGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSEEDTIAILRGLKERYEVH
HGVSITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEELDRLDRRLIQLKIEREALKKE
DDEATRKRLAKLEEDIVKLEREYADLEEIWKSEKAEVQGSAQIQQKIEQAKQEMEAARRKGDLESMARIQYQ
TIPDLERSLQMVDQHGKTENQLLRNKVTDEEIAEVVSKWTGIPVSKMLEGEREKLLRMEQELHRRVIGQDEA
VVAVSNAVRRSRAGLADPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEALVRIDMSEFMEKHSVARLIG
APPGYVGFEEGGYLTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNL
GSAQIQELAGDREAQRAAVMDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLE
LSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAGKFAPGASISAKVEGDEIVFA*

AnnotationID:170 GeneID:160

AnnotatorUID: danlee

Modification Date/Time: 2005-07-15 17:05:51

Gene Name: clpB

Confidence Code: 2

GeneProduct: clpB protein

Cell Localization: (1) Cytoplasmic

Synonyms:

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (9) Chaperones & heat shock proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:323

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17465

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:160

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

287 PA4542_tr translation of PA4542 854 99.99 99.99 0 4239.0

18408 gb|AAG07930.1|AE004868_1 (AE004868) ClpB protein [Pseudomonas aeruginosa PAO1] 854 99.99 99.99 0 4239.0

18407 gb|AAP81264.1| (AY273871) ClpB [Pseudomonas aeruginosa] 854 99.99 99.99 0 4239.0

18409 gb|AAN66250.1|AE016253_5 (AE016776) ATP-dependent Clp protease, ATP-binding subunit ClpB [Pseudomonas putida KT2440] 854 89.69 94.96 0 3873.0

18410 gb|AAO54370.1| (AE016858) clpB protein [Pseudomonas syringae pv. tomato str. DC3000] 854 88.17 94.73 0 3813.0

GC ORFID: `43162`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4542`	Glimmer Score:
Start: `4626118`	Stop: `4623554`
Length: `2565`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4542 translation of PA4542`	Homolog Bit Score `1637.0`
Other Homologs: `t_PA3365 (ORF: BLASTX 199.0), psyr_15may02_Scaffold2_revised_gene3550 (ORF: BLASTX 100.0), t_PA4542 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGAATAGACCGTTTGACCAGCAAGCTGCAACTGGCGCTCTCCGACGCCCAGTCCCTGGCCGTTGGCCAT GACCATCCGGCCATCGAGCCGGTGCACCTGCTTTCCGCCCTGCTCGAGCAGCAAGGCGGTTCGATCAAGCCC CTGCTGATGCAGGTCGGCTTCGATATCGCCGCCCTGCGCAGCGGCCTCAACAAAGAACTCGACGCGCTGCCG AAGATCCAGAGCCCGACCGGCGACGTGAACCTGTCCCAGGATCTCGCACGCCTGCTCAACCAGGCTGACCGC CTGGCCCAGCAGAAGGGCGACCAGTTCATCTCCAGCGAGCTGGTATTGCTGGCCGCGATGGACGAGAACACC AGGCTCGGCAAGCTGCTGCTCGGCCAGGGCGTGTCGCGCAAGGCGCTGGAGAATGCCGTGGCCAACCTGCGT GGCGGCGAAGCGGTGAACGACCCGAACGTCGAGGAGTCGCGCCAGGCGCTGGACAAGTACACCGTCGACATG ACCAAGCGCGCCGAGGAAGGCAAGCTCGACCCGGTGATCGGTCGCGACGACGAGATCCGCCGGACCATCCAG GTCCTGCAGCGGCGGACCAAGAACAACCCGGTGCTGATCGGCGAACCCGGCGTCGGCAAGACCGCCATCGTC GAGGGCCTGGCCCAGCGCATCATCAACGGCGAAGTGCCGGACGGCCTCAAGGACAAGCGCCTGCTGGCCCTG GACATGGGGGCGCTGATCGCCGGTGCCAAGTTCCGCGGCGAGTTCGAGGAACGCCTGAAGGCGGTCCTCAAC GAACTGGGCAAGCAGGAAGGCCGGGTCATCCTGTTCATCGACGAACTGCACACCATGGTCGGCGCCGGCAAG GCGGAAGGTGCCATGGACGCCGGCAACATGCTCAAGCCGGCTCTGGCGCGCGGCGAGCTGCACTGCGTCGGT GCTACTACCCTCGACGAGTATCGCCAGTACATCGAGAAGGATGCCGCGCTGGAGCGCCGCTTCCAGAAGGTG CTGGTGGACGAACCGAGCGAGGAAGACACCATCGCCATCCTCCGTGGCCTCAAGGAACGCTATGAAGTGCAC CACGGGGTGAGCATCACCGACGGCGCGATCATCGCCGCGGCCAAGCTGTCGCACCGCTACATCACCGATCGG CAACTGCCGGACAAGGCCATCGACCTGATCGACGAGGCCGCCAGCCGCATCCGCATGGAGATCGACTCCAAG CCGGAGGAACTGGATCGTCTCGACCGTCGCCTGATCCAGCTGAAGATCGAGCGCGAGGCGCTGAAGAAGGAA GACGACGAAGCCACCAGGAAGCGCCTGGCCAAGCTGGAGGAGGATATCGTCAAGCTCGAGCGCGAATACGCC GACCTCGAGGAGATCTGGAAGTCCGAGAAGGCCGAGGTGCAGGGCTCGGCGCAGATCCAGCAGAAGATCGAG CAGGCCAAGCAGGAGATGGAGGCGGCGCGGCGCAAGGGCGACCTCGAGAGCATGGCGCGCATCCAGTACCAG ACCATCCCGGACCTGGAACGCAGCCTGCAGATGGTCGACCAGCACGGCAAGACCGAGAACCAGTTGCTGCGC AACAAGGTGACCGACGAGGAAATCGCCGAAGTGGTTTCCAAGTGGACCGGTATCCCGGTGTCGAAGATGCTC GAGGGCGAGCGCGAGAAGCTGCTGCGCATGGAGCAGGAGCTGCATCGGCGAGTGATCGGCCAGGACGAGGCG GTAGTCGCCGTGTCCAACGCCGTGCGCCGTTCGCGCGCCGGCCTCGCCGATCCGAACCGGCCGAGCGGCTCG TTCCTCTTCCTCGGCCCGACCGGGGTGGGCAAGACCGAGTTGTGCAAGGCGCTGGCCGAGTTCCTCTTCGAT ACCGAGGAGGCGCTGGTGCGGATAGATATGTCCGAGTTCATGGAGAAACACTCGGTGGCCCGCCTGATCGGC GCGCCTCCGGGCTACGTCGGCTTCGAGGAAGGCGGCTACCTGACCGAGGCGATCCGCCGCAAGCCCTACTCG GTGGTGCTGCTGGACGAGGTGGAGAAGGCCCATCCGGATGTATTCAACATTCTCCTCCAGGTGCTCGAGGAC GGACGCCTGACCGACAGTCACGGGCGTACGGTGGACTTCCGCAACACCGTGGTGGTGATGACCTCCAACCTC GGTTCGGCGCAGATCCAGGAGCTGGCCGGCGACCGCGAGGCGCAACGTGCCGCAGTGATGGACGCGGTCAAT GCGCACTTCCGTCCGGAATTCATCAACCGGATCGACGAAGTGGTGGTGTTCGAGCCGCTGGCTCGCGAGCAG ATCGCCGGCATCGCCGAGATCCAGCTCGGTCGCCTGCGCAAGCGCCTGGCCGAGCGCGAGCTGAGCCTGGAA CTGAGCCAGGAGGCGCTGGACAAGCTGATTGCCGTCGGCTTCGACCCGGTCTATGGCGCACGCCCGCTGAAG CGGGCCATCCAGCGCTGGATCGAGAACCCGCTGGCGCAACTGATCCTGGCCGGCAAATTCGCGCCGGGTGCC AGTATCTCGGCGAAGGTGGAAGGCGACGAGATCGTCTTCGCCTGA