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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07657.1|AE004842_6 (AE004842) DNA-directed RNA polymerase beta* chain [Pseudomonas aeruginosa PAO1]
Identities = 1399/1399 (100%), Positives = 1399/1399 (100%)
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Sequence:
TTGAAAGACTTGCTTAATCTGTTGAAAAACCAGGGTCAAATCGAAGAGTTCGATGCCATCCGTATTGGCCTG
GCTTCGCCCGAGATGATTCGTTCCTGGTCTTTCGGCGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACC
TTCAAGCCGGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCGGTGAAGGACTACGAGTGCCTGTGC
GGCAAGTACAAGCGCCTCAAGCACCGCGGTGTGATCTGCGAGAAGTGCGGCGTGGAAGTCGCCCTGGCCAAG
GTGCGCCGCGAGCGCATGGGCCACATCGAGCTGGCTTCGCCGGTTGCCCACATCTGGTTCCTGAAGTCGCTG
CCGTCCCGTATCGGCCTGCTGCTGGACATGACCCTGCGCGATATCGAGCGCGTGCTCTATTTCGAGAGCTAC
GTGGTGATCGATCCGGGCATGACCACTCTGGAAAAGGGCCAACTGCTGAACGACGAGCAATACTTCGAGGCC
CTCGAAGAGTTCGGTGACGATTTCGATGCTCGCATGGGCGCCGAAGCCGTTCACGAACTGCTCAACGCCATC
GACCTGGAGCACGAGATCGGCCGCCTGCGCGAAGAGATTCCGCAGACCAACTCGGAAACCAAGATCAAGAAG
CTGTCCAAGCGCCTGAAGCTGATGGAAGCCTTCCAGGGCTCCGGCAACAAGCCTGAGTGGATGGTCCTGACC
GTCCTGCCGGTGCTGCCGCCGGACCTGCGTCCGCTGGTTCCGCTGGATGGCGGTCGCTTCGCGACTTCCGAC
CTGAACGACCTATATCGTCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTCGACCTGGCCGCTCCG
GACATCATCGTGCGCAACGAAAAGCGCATGCTGCAGGAAGCCGTCGACGCCCTGCTCGACAACGGCCGTCGC
GGTCGCGCCATCACCGGCTCGAACAAGCGTCCGCTGAAGTCGCTGGCCGACATGATCAAGGGCAAGCAAGGT
CGCTTCCGTCAGAACCTGCTCGGCAAGCGCGTGGACTACTCCGGTCGTTCCGTGATCACCGTGGGCCCGACC
CTGCGCCTGCACCAGTGCGGTCTGCCGAAGAAGATGGCCCTGGAGCTGTTCAAGCCGTTCATCTTCGGCAAG
CTGGAAGGTCGTGGCATGGCCACCACCATCAAGGCCGCCAAGAAAATGGTCGAGCGCGAGCTGCCCGAGGTC
TGGGACGTTCTCGCCGAAGTTATCCGCGAGCATCCGGTTCTCCTGAACCGTGCGCCGACCCTGCACCGTCTG
GGCATCCAGGCGTTCGAGCCGGTCCTCATCGAAGGCAAGGCGATCCAGCTGCACCCGCTGGTCTGCGCCGCG
TACAACGCCGACTTCGACGGTGACCAGATGGCCGTCCACGTTCCGCTGACCCTCGAGGCCCAGCTGGAAGCG
CGCGCGCTGATGATGTCCACCAACAACATCCTGTCGCCCGCCAACGGCGAGCCGATCATCGTTCCGTCGCAG
GACGTGGTAATGGGTCTGTACTACATGACCCGTGAAGCGATCAACGCGAAGGGCGAGGGCATGGCCTTCGCC
GACCTGCAGGAAGTCGACCGCGCCTACCGCAGCGGCCAGGCGTCCCTGCACGCTCGTGTGAAAGTGCGCATC
AACGAAAAGATCAAGGGTGAAGACGGCCAACTGACCGCCAATACCCGTATCGTCGACACCACCGTCGGCCGC
GCGCTGCTGTTCCAGGTCGTTCCGGCCGGCCTGCCGTTCGACGTGGTCAACCAGTCGATGAAGAAGAAGGCG
ATCTCCAAGCTGATCAACCACTGCTATCGCGTGGTGGGTCTGAAGGACACCGTCATCTTCGCCGACCAGCTG
ATGTACACCGGTTTCGCCTACTCGACCATTTCCGGCGTGTCCATCGGCGTCAACGACTTCGTCATCCCGGAC
GAAAAGGCGCGGATCATCAACGCCGCCACCGACGAAGTGAAGGAGATCGAGAGCCAGTACGCCTCCGGCCTG
GTAACCCAGGGCGAGAAGTACAACAAGGTGATCGACCTGTGGTCGAAGGCCAACGACGAAGTGTCCAAGGCG
ATGATGGCCAACCTCTCGAAAGAGAAGGTCGTCGATCGCGAGGGCAAGGAAGTCGATCAGGAGTCCTTCAAC
TCCATGTACATGATGGCTGACTCGGGTGCGCGGGGCTCCGCGGCCCAGATCCGTCAGCTGGCAGGTATGCGT
GGTCTGATGGCCAAGCCGGACGGCTCGATCATCGAGACCCCGATCACCGCGAACTTCCGGGAAGGCCTGAAC
GTACTCCAGTACTTCATCTCCACCCACGGTGCTCGTAAGGGTCTGGCGGATACCGCGCTGAAGACCGCGAAC
TCCGGTTACCTGACCCGTCGTCTGGTCGACGTGGCCCAGGATCTGGTAGTGACCGAGATCGATTGCGGTACC
GAGCACGGCCTGCTGATGTCGCCGCACATCGAAGGCGGCGACGTGGTCGAACCGCTCGGCGAGCGCGTGCTC
GGCCGTGTGATCGCGCGCGACGTGTTCAAGCCGGGCAGCGACGAGGTCATCGTGCCGGCCGGCACCCTGATC
GACGAGAAGTGGGTCGACTTCCTCGAAGTGATGAGCGTCGACGAAGTGGTGGTGCGTTCCCCGATCACCTGC
GAAACCCGTCATGGCATCTGCGCCATGTGCTACGGCCGCGACCTGGCCCGTGGCCATCGCGTCAACATCGGC
GAGGCGGTCGGTGTCATCGCTGCCCAGTCCATCGGTGAGCCGGGCACCCAGCTGACCATGCGTACCTTCCAC
ATCGGCGGTGCGGCCAGCCGGACCTCCGCGGCCGACAACGTCCAGGTGAAGAACGGCGGTACCATCCGCCTG
CACAACCTGAAGCATGTGGTTCGTGCCGACGGCGCGCTGGTCGCGGTTTCCCGTTCCGGCGAACTGGCGGTT
GCCGACGACTTCGGTCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGTGCGGTGATCTCGGTCAAGGAAGGT
GACAAGGTCGACCCGGGCGCCATCGTCGCCAAGTGGGACCCGCACACCCACCCGATCGTCACCGAGGTGGAC
GGTACCGTGGCCTTCGTGGGCATGGAAGAGGGCATCACCGTCAAGCGTCAGACCGACGAACTGACCGGCCTG
ACCAACATCGAAGTGATGGATCCGAAGGACCGTCCGGCTGCCGGCAAGGACATCCGTCCGGCCGTGAAGCTG
ATCGATGCCGCGGGCAAGGACCTGCTGCTGCCGGGTACCGACGTACCGGCGCAGTACTTCCTGCCGGCCAAC
GCCCTGGTCAACCTGACCGACGGCGCCAAGGTGAGCATCGGTGACGTTGTCGCGCGTATCCCGCAGGAAACC
TCGAAGACCCGTGACATCACCGGTGGTCTGCCGCGCGTTGCCGACCTGTTCGAGGCTCGTCGTCCGAAAGAG
CCTTCGATCCTGGCGGAAATCAGCGGCACCATCTCCTTCGGCAAGGAGACCAAGGGCAAGCGCCGCCTGGTC
ATCACGCCGAACGATGGCAGCGATCCGTACGAGGAGCTGATTCCGAAGTGGCGTCACCTGAACGTGTTCGAA
GGCGAACAGGTGAACCGCGGCGAAGTCATCTCCGACGGTCCGAGCAACCCGCACGACATCCTGCGCCTGCTG
GGCGTGAGCTCGCTGGCGAAGTACATCGTCAACGAGATCCAGGACGTCTACCGTCTGCAGGGCGTGAAAATC
AACGACAAGCACATCGAGACCATCCTGCGTCAGATGCTGCGCAAGGTCGAAGTCAGTGAGTCCGGCGACTCC
AGCTTCATCAAAGGCGACCAGGTGGAACTCACCCAGGTGCTGGAAGAGAACGAACAGCTCGGTACCGAGGAC
AAGTTCCCGGCCAAGTACGAGCGGGTTCTGCTGGGTATCACCAAGGCCTCCCTGTCGACCGAGTCGTTCATT
TCCGCGGCGTCGTTCCAGGAGACCACCCGCGTCCTCACCGAGGCGGCGGTCACCGGCAAGCGCGACTTCCTG
CGTGGTCTGAAAGAGAACGTGGTCGTGGGTCGCCTGATCCCGGCCGGTACCGGTCTGGCTTACCACAGCGAG
CGCAAGCGTCAGCGCGACCTCGGCAAGCCGCAGCGTGTGAGTGCCAGCGAGGCGGAAGCCGCACTGACCGAA
GCGCTGAACTCGAGCGGTAACTAA |
Translation:
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLC
GKYKRLKHRGVICEKCGVEVALAKVRRERMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESY
VVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLNAIDLEHEIGRLREEIPQTNSETKIKK
LSKRLKLMEAFQGSGNKPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAP
DIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKMVERELPEVWDVLAEVIREHPVLLNRAPTLHRL
GIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQ
DVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSGQASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGR
ALLFQVVPAGLPFDVVNQSMKKKAISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPD
EKARIINAATDEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTAN
SGYLTRRLVDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVLGRVIARDVFKPGSDEVIVPAGTLI
DEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYGRDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFH
IGGAASRTSAADNVQVKNGGTIRLHNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYGAVISVKEG
DKVDPGAIVAKWDPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKL
IDAAGKDLLLPGTDVPAQYFLPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKE
PSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLL
GVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTED
KFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSE
RKRQRDLGKPQRVSASEAEAALTEALNSSGN* |
AnnotationID:26 | GeneID:16 |
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Modification Date/Time: |
2005-04-03 17:05:44 |
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GeneProduct: | DNA-directed RNA polymerase beta* chain |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (24) Transcription, RNA processing and degradation |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAO54162.1| (AE016858) DNA-directed RNA polymerase, beta' subunit [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 1399
Score = 2568 bits (6656), Expect = 0.0
Identities = 1290/1399 (92%), Positives = 1356/1399 (96%)
>gb|AAN66078.1|AE016237_2 (AE016775) DNA-directed RNA polymerase, beta' subunit [Pseudomonas
putida KT2440]
Length = 1399
Score = 2565 bits (6648), Expect = 0.0
Identities = 1290/1399 (92%), Positives = 1355/1399 (96%)
>gb|AAN53310.1|AE015472_2 (AE015472) DNA-directed RNA polymerase, beta' subunit [Shewanella
oneidensis MR-1]
Length = 1405
Score = 2143 bits (5552), Expect = 0.0
Identities = 1070/1403 (76%), Positives = 1220/1403 (86%), Gaps = 4/1403 (0%) |
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Structural Features: | COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit [Transcription]
CD-Length = 808 residues, 99.3% aligned
Score = 922 bits (2384), Expect = 0.0
Identities = 450/861 (52%), Positives = 532/861 (61%), Gaps = 86/861 (9%)
smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus
CD-Length = 305 residues, 100.0% aligned
Score = 399 bits (1026), Expect = 1e-111
Identities = 155/305 (50%), Positives = 193/305 (63%), Gaps = 25/305 (8%)
pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5.
CD-Length = 546 residues, 100.0% aligned
Score = 337 bits (864), Expect = 6e-93
Identities = 156/602 (25%), Positives = 227/602 (37%), Gaps = 101/602 (16%)
pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1.
CD-Length = 334 residues, 100.0% aligned
Score = 328 bits (843), Expect = 3e-90
Identities = 139/353 (39%), Positives = 181/353 (51%), Gaps = 43/353 (12%) |
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