ViewGene
Locus Name:
GeneID:
Location:

GeneID:1599
TrivialName: PA14_50060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50060
PAO1 Ortholog Locus:PA1107
Sequence Length:1197
Protein Length:398
Start: 4449985
Stop: 4451181
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04496.1|AE004541_1 (AE004541) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 392/398 (98%), Positives = 395/398 (99%)
Sequence:
GTGGCCAGAACGACGCTCGAATCGATCCAGCACGCCATCGAGGTGAATTCGTCCCTGGCCCTTCCCATCGCC
CTGGAGAATCTCTCGCGTCTGACCCACCTCGCGCTGCTGACCGTCCCCTTCAACCTGATCCACATTCTGGTG
TTTTCCCTGAAGGACTTCCGCCCGGACCTCGGCCATCAGCTCTGGCGCCAGGAAATCATGTACGCCCATGGC
GCCATGGCCCTGCTCTTCGGCGGCATCGGCCTGCTCGCGCTATGGCTGCGCCGCCAGCCACCCAAGCTGTGG
CGCATGCGCCTGCTGATCCTGCTGGGCGGCGCAGGGATCATAGGCTTCGGCGTCGCCATCGCCTGCATCGAC
CAGCGCATCACCAGCAACATCACGCCGCTGCTGCTGGCCTGTTTCGCCTGCGCCATGTTCATCCTGATCCGC
CCGGCCTACGCGGTGCCTTTCTACGGCCTGGCCATGCTGGTCTTCCAACTGGCGATGGGCTACGCCCAGGCC
GACCCGCAACTGCGCCTGTCGAACCAGGCCAACGGCCTCACCGCGTTCGGCCTCGGCCTGCTGCTGTCGCTG
ATCCTCTGGCACGGGCACGTGCGCAACCTGCGCCAGCAACGCAAGCTGGAGTTGCAGCTGCAGGAGCTGGAG
GAGAAAAATCGCCAGTTGGAGTACCTGGCCGGTCACGACCCGCTGACCGGCCTGTTCAATCGTCGCGAATTC
GACCAGCTGGTGCTCATGGAACTCGCGCGCATCGCTCGCCAACCGCAGCCGCTGAGCCTGCTGATGGTCGAC
CTGGATCACTTCAAGTACATCAACGACCGCTATGGGCACCCCTTCGGCGACGAGGTCATTCGCCATGCCGCC
AACCTGCTGCGCGGCAATACCCGTAGCAGCGACAGCGTGGCGCGCCTGGGCGGGGAAGAATTCCTCCTGCTC
CTGCCCGACACCGCCGAGCAGCAGGCTCGCAGCCTTGCGGAAAAACTCCGCGAACGCCTCGAAGGTACCCCG
CTGGCGACGCAGGACGGCGTGCTCTGCCTGACCGCCAGCTTCGGCGTGGCCAGCCTCGACGGAGGCGGCCAG
GCCAGCTACGAGCAGCTCTACAGCGCCGCCGACCAGGCTCTCTACCGGGCCAAGAGCAGCGGTCGCAACCGG
GTCGAAGTGATTCGCCTGGCCAGCCTCGCGGAAAGCCTGCGGTAA
Translation:
MARTTLESIQHAIEVNSSLALPIALENLSRLTHLALLTVPFNLIHILVFSLKDFRPDLGHQLWRQEIMYAHG
AMALLFGGIGLLALWLRRQPPKLWRMRLLILLGGAGIIGFGVAIACIDQRITSNITPLLLACFACAMFILIR
PAYAVPFYGLAMLVFQLAMGYAQADPQLRLSNQANGLTAFGLGLLLSLILWHGHVRNLRQQRKLELQLQELE
EKNRQLEYLAGHDPLTGLFNRREFDQLVLMELARIARQPQPLSLLMVDLDHFKYINDRYGHPFGDEVIRHAA
NLLRGNTRSSDSVARLGGEEFLLLLPDTAEQQARSLAEKLRERLEGTPLATQDGVLCLTASFGVASLDGGGQ
ASYEQLYSAADQALYRAKSSGRNRVEVIRLASLAESLR*
AnnotationID:1608GeneID:1599
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 13:01:03
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1107
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2199, pfam00990
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2199, FOG: GGDEF domain [Signal transduction mechanisms]
     CD-Length = 181 residues,  98.9% aligned
     Score =  177 bits (449), Expect = 2e-45
pfam00990, GGDEF, GGDEF domain.  Score: 170, 4e-43






   
Genomic Context:






   
Comment:


















    ReferenceID:14393




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20348




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1599
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2826
                           PA1107_tr
                           translation of PA1107
                           398
                           98.49
                           99.24
                           0
                           1983.0
     

     
     
88203
                           gb|AAG04496.1|AE004541_1
                           (AE004541) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           398
                           98.24
                           99.24
                           0
                           1980.0
     

     
     
88206
                           gb|AAG07089.1|AE004789_9
                           (AE004789) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           435
                           28.27
                           40.91
                           125
                           355.0
     

     
     
2827
                           PA3702_tr
                           translation of PA3702
                           435
                           28.27
                           40.91
                           125
                           355.0
     

     
     
88232
                           gb|AAO55827.1|
                           (AE016864) sensory box/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           416
                           28.12
                           39.18
                           111
                           328.0
     

     






      

          
GC ORFID: 44601How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1107Glimmer Score: 

          
Start: 503923Stop: 502727

          
Length: 1197


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1107 translation of PA1107Homolog Bit Score 768.0

          
Other Homologs:  t_PA3702 (ORF: BLASTX 142.0), psyr_15may02_Scaffold3_revised_gene4587 (ORF: BLASTX 132.0), psyr_15may02_Scaffold7_revised_gene7294 (ORF: BLASTX 112.0), t_PA1107 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCCAGAACGACGCTCGAATCGATCCAGCACGCCATCGAGGTGAATTCGTCCCTGGCCCTTCCCATCGCC 
CTGGAGAATCTCTCGCGTCTGACCCACCTCGCGCTGCTGACCGTCCCCTTCAACCTGATCCACATTCTGGTG 
TTTTCCCTGAAGGACTTCCGCCCGGACCTCGGCCATCAGCTCTGGCGCCAGGAAATCATGTACGCCCATGGC 
GCCATGGCCCTGCTCTTCGGCGGCATCGGCCTGCTCGCGCTATGGCTGCGCCGCCAGCCACCCAAGCTGTGG 
CGCATGCGCCTGCTGATCCTGCTGGGCGGCGCAGGGATCATAGGCTTCGGCGTCGCCATCGCCTGCATCGAC 
CAGCGCATCACCAGCAACATCACGCCGCTGCTGCTGGCCTGTTTCGCCTGCGCCATGTTCATCCTGATCCGC 
CCGGCCTACGCGGTGCCTTTCTACGGCCTGGCCATGCTGGTCTTCCAACTGGCGATGGGCTACGCCCAGGCC 
GACCCGCAACTGCGCCTGTCGAACCAGGCCAACGGCCTCACCGCGTTCGGCCTCGGCCTGCTGCTGTCGCTG 
ATCCTCTGGCACGGGCACGTGCGCAACCTGCGCCAGCAACGCAAGCTGGAGTTGCAGCTGCAGGAGCTGGAG 
GAGAAAAATCGCCAGTTGGAGTACCTGGCCGGTCACGACCCGCTGACCGGCCTGTTCAATCGTCGCGAATTC 
GACCAGCTGGTGCTCATGGAACTCGCGCGCATCGCTCGCCAACCGCAGCCGCTGAGCCTGCTGATGGTCGAC 
CTGGATCACTTCAAGTACATCAACGACCGCTATGGGCACCCCTTCGGCGACGAGGTCATTCGCCATGCCGCC 
AACCTGCTGCGCGGCAATACCCGTAGCAGCGACAGCGTGGCGCGCCTGGGCGGGGAAGAATTCCTCCTGCTC 
CTGCCCGACACCGCCGAGCAGCAGGCTCGCAGCCTTGCGGAAAAACTCCGCGAACGCCTCGAAGGTACCCCG 
CTGGCGACGCAGGACGGCGTGCTCTGCCTGACCGCCAGCTTCGGCGTGGCCAGCCTCGACGGAGGCGGCCAG 
GCCAGCTACGAGCAGCTCTACAGCGCCGCCGACCAGGCTCTCTACCGGGCCAAGAGCAGCGGTCGCAACCGG 
GTCGAAGTGATTCGCCTGGCCAGCCTCGCGGAAAGCCTGCGGTAA