ViewGene
Locus Name:
GeneID:
Location:

GeneID:1598
TrivialName: PA14_12810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12810
PAO1 Ortholog Locus:PA3947
Sequence Length:1179
Protein Length:392
Start: 1096875
Stop: 1098053
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07334.1|AE004813_1 (AE004813) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 392/392 (100%), Positives = 392/392 (100%)
Sequence:
ATGAATGATTTGAATGTTCTGGTGTTGGAGGATGAGCCTTTTCAGCGCCTGGTAGCCGTCACAGCCCTGAAG
AAAGTGGTGCCCGGATCGATCCTCGAGGCGGCGGACGGCAAGGAGGCGGTGGCGATCCTGGAGTCCTGCGGA
CACGTCGACATCGCCATCTGCGACCTGCAGATGAGCGGCATGGACGGCCTGGCATTCCTTCGCCACGCAAGC
CTGAGCGGCAAGGTTCATTCGGTGATCCTCAGCAGCGAGGTGGATCCCATCCTGCGCCAGGCCACCATTTCG
ATGATCGAGTGCCTGGGCCTCAATTTTCTCGGCGACCTCGGCAAGCCATTCAGCCTGGAGCGGATCACCGCC
CTGTTGACCCGCTACAACGCTCGTCGCCAGGACCTGCCGCGACAGATCGAAGTCGCCGAGCTGCCCTCCGTG
GCGGACGTGGTGCGCGGCCTCGACAACGGCGAGTTCGAAGCCTACTACCAGCCCAAGGTGGCCCTGGATGGC
GGCGGCCTGATCGGCGCCGAGGTCCTGGCACGCTGGAACCACCCGCATCTCGGCGTATTGCCGCCGTCGCAT
TTCCTCTATGTGATGGAAACCTACAACCTGGTCGACAAGCTGTTCTGGCAACTGTTCAGCCAGGGTCTGGCG
ACGCGCAGGAAGCTGGCGCAGTTGGGGCAGCCGATCAACCTGGCGTTCAACGTCCATCCTTCGCAACTGGGT
TCGCGTGCGCTGGCCGAGAACATCTCGGCGTTGCTGACCGAGTTCCACCTGCCGCCCAGTTCGGTGATGTTC
GAGATCACCGAGACCGGGTTGATCAGCGCTCCTGCCAGCAGCCTGGAGAACCTCGTGCGTCTGCGGATCATG
GGCTGCGGCCTGGCGATGGACGATTTCGGCGCCGGCTATTCGTCCCTCGACCGGCTCTGCGAGTTTCCCTTC
AGCCAGATCAAGCTGGACAGAACCTTCGTCCAGAAGATGAAGACCCAGCCCAGGAGTTGCGCCGTCATCAGC
AGTGTCGTGGCGTTGGCGCAGGCGCTGGGAATTTCCCTGGTGGTGGAAGGGGTGGAGAGCGACGAACAACGG
GTACGCCTGATCGAACTCGGTTGCTCCATAGCCCAGGGCTACCTGTTCGCCCGGCCGATGCCGGAACAGCAC
TTTCTCGACTATTGCTCCGGATCCTGA
Translation:
MNDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESCGHVDIAICDLQMSGMDGLAFLRHAS
LSGKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQDLPRQIEVAELPSV
ADVVRGLDNGEFEAYYQPKVALDGGGLIGAEVLARWNHPHLGVLPPSHFLYVMETYNLVDKLFWQLFSQGLA
TRRKLAQLGQPINLAFNVHPSQLGSRALAENISALLTEFHLPPSSVMFEITETGLISAPASSLENLVRLRIM
GCGLAMDDFGAGYSSLDRLCEFPFSQIKLDRTFVQKMKTQPRSCAVISSVVALAQALGISLVVEGVESDEQR
VRLIELGCSIAQGYLFARPMPEQHFLDYCSGS*
AnnotationID:1607GeneID:1598
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 12:12:17
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:()
Synonyms:PA3947
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2200, pfam00563, smart00052, COG5001
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11907 COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
Length = 256
Score =  237 bits (605), Expect = 4e-63
Identities = 101/248 (40%), Positives = 145/248 (58%), Gaps = 1/248 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20346




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1598
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2825
                           PA3947_tr
                           translation of PA3947
                           392
                           99.99
                           99.99
                           0
                           1987.0
     

     
     
88198
                           gb|AAG07334.1|AE004813_1
                           (AE004813) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           392
                           99.99
                           99.99
                           0
                           1987.0
     

     
     
88199
                           emb|CAE33157.1|
                           (BX640445) probable two-component response regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           403
                           44.41
                           60.54
                           11
                           832.0
     

     
     
88200
                           emb|CAE36888.1|
                           (BX640427) probable two-component response regulator [Bordetella parapertussis]
                           403
                           44.16
                           60.04
                           11
                           823.0
     

     
     
88201
                           gb|AAN75560.1|
                           (AY155575) probable response regulator [Bordetella avium]
                           405
                           20.49
                           32.59
                           214
                           411.0
     

     






      

          
GC ORFID: 44600How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3947Glimmer Score: 

          
Start: 3857063Stop: 3855885

          
Length: 1179


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3947 translation of PA3947Homolog Bit Score 769.0

          
Other Homologs:  t_PA3947 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGATTTGAATGTTCTGGTGTTGGAGGATGAGCCTTTTCAGCGCCTGGTAGCCGTCACAGCCCTGAAG 
AAAGTGGTGCCCGGATCGATCCTCGAGGCGGCGGACGGCAAGGAGGCGGTGGCGATCCTGGAGTCCTGCGGA 
CACGTCGACATCGCCATCTGCGACCTGCAGATGAGCGGCATGGACGGCCTGGCATTCCTTCGCCACGCAAGC 
CTGAGCGGCAAGGTTCATTCGGTGATCCTCAGCAGCGAGGTGGATCCCATCCTGCGCCAGGCCACCATTTCG 
ATGATCGAGTGCCTGGGCCTCAATTTTCTCGGCGACCTCGGCAAGCCATTCAGCCTGGAGCGGATCACCGCC 
CTGTTGACCCGCTACAACGCTCGTCGCCAGGACCTGCCGCGACAGATCGAAGTCGCCGAGCTGCCCTCCGTG 
GCGGACGTGGTGCGCGGCCTCGACAACGGCGAGTTCGAAGCCTACTACCAGCCCAAGGTGGCCCTGGATGGC 
GGCGGCCTGATCGGCGCCGAGGTCCTGGCACGCTGGAACCACCCGCATCTCGGCGTATTGCCGCCGTCGCAT 
TTCCTCTATGTGATGGAAACCTACAACCTGGTCGACAAGCTGTTCTGGCAACTGTTCAGCCAGGGTCTGGCG 
ACGCGCAGGAAGCTGGCGCAGTTGGGGCAGCCGATCAACCTGGCGTTCAACGTCCATCCTTCGCAACTGGGT 
TCGCGTGCGCTGGCCGAGAACATCTCGGCGTTGCTGACCGAGTTCCACCTGCCGCCCAGTTCGGTGATGTTC 
GAGATCACCGAGACCGGGTTGATCAGCGCTCCTGCCAGCAGCCTGGAGAACCTCGTGCGTCTGCGGATCATG 
GGCTGCGGCCTGGCGATGGACGATTTCGGCGCCGGCTATTCGTCCCTCGACCGGCTCTGCGAGTTTCCCTTC 
AGCCAGATCAAGCTGGACAGAACCTTCGTCCAGAAGATGAAGACCCAGCCCAGGAGTTGCGCCGTCATCAGC 
AGTGTCGTGGCGTTGGCGCAGGCGCTGGGAATTTCCCTGGTGGTGGAAGGGGTGGAGAGCGACGAACAACGG 
GTACGCCTGATCGAACTCGGTTGCTCCATAGCCCAGGGCTACCTGTTCGCCCGGCCGATGCCGGAACAGCAC 
TTTCTCGACTATTGCTCCGGATCCTGA