ViewGene
Locus Name:
GeneID:
Location:

GeneID:1597
TrivialName: PA14_15890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15890
PAO1 Ortholog Locus:PA3751
Sequence Length:1182
Protein Length:393
Start: 1353499
Stop: 1354680
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07138.1|AE004794_3 (AE004794) phosphoribosylglycinamide formyltransferase 2 [Pseudomonas aeruginosa PAO1]
Identities = 393/393 (100%), Positives = 393/393 (100%)
Sequence:
ATGACCCGTATCGGTACCCCCCTGTCGCCGAGCGCGACCCGCGTCCTTCTCTGTGGCTCCGGCGAGCTGGGC
AAGGAAGTCGCCATCGAGCTGCAACGCCTGGGTTGCGAAGTGATCGCCGTCGATCGCTATGGCAACGCGCCG
GCCATGCAGGTGGCACATCGCAGCCACGTGATCAGCATGCTCGACGGTGCCGCCCTGCGCGCGGTGATCGAG
CAGGAGAAGCCGCACTACATCGTGCCGGAGATCGAGGCCATCGCCACCGCGACCCTGGTCGAGCTGGAGGCC
GAAGGCTACACCGTGGTGCCCACCGCCCGCGCCGCGCAACTGACCATGAACCGCGAGGGTATCCGCCGGCTG
GCTGCCGAGGAGCTCGGCTTGCCGACCTCGCCCTATCACTTCGCCGATACCTTCGAGGACTACCGCCGTGGC
GTCGAGCGCGTCGGCTACCCCTGCGTGGTGAAGCCGATCATGAGTTCGTCTGGCAAGGGCCAGAGCGTCCTG
AAAGGCCCCGACGACCTGCAGGCGGCCTGGGACTATGCCCAGGAAGGCGGGCGCGCCGGCAAGGGCCGGGTG
ATCGTCGAGGGCTTCATCGATTTCGACTACGAAATCACCCTGCTCACCGTGCGCCACGTCGACGGCACCACT
TTCTGCGCGCCGATCGGTCACCGCCAGGTCAAGGGTGACTACCACGAGTCCTGGCAGCCGCAGGCGATGAGC
GCGCAGGCCCTGGCCGAGTCCGAGCGGGTCGCCCGGGCAGTGACCGAGGCCCTCGGCGGACGCGGGCTGTTC
GGCGTCGAACTGTTCGTCAAGGGCGACCAGGTGTGGTTCAGCGAGGTGTCGCCGCGACCGCACGATACCGGC
CTGGTGACCCTGATTTCCCAGGATCTTTCCGAGTTCGCGCTGCACGCGCGGGCGATCCTCGGCCTGCCGATC
CCGGTGATCCGCCAGCTTGGCCCGTCGGCCTCGGCGGTGATCCTGGTGGAAGGCAAGTCCCGGCAGGTCGCT
TTCGCCAACCTCGGCGCCGCGCTGAGCGAGGCGGATACGGCGCTACGCCTGTTCGGCAAGCCGGAAGTGGAT
GGCCAGCGGCGGATGGGCGTGGCCCTGGCGCGCGACGAGTCGATCGACGCCGCTCGCGCCAAGGCGACCCGG
GCCGCCCAGGCGGTTCGCGTCGAACTCTGA
Translation:
MTRIGTPLSPSATRVLLCGSGELGKEVAIELQRLGCEVIAVDRYGNAPAMQVAHRSHVISMLDGAALRAVIE
QEKPHYIVPEIEAIATATLVELEAEGYTVVPTARAAQLTMNREGIRRLAAEELGLPTSPYHFADTFEDYRRG
VERVGYPCVVKPIMSSSGKGQSVLKGPDDLQAAWDYAQEGGRAGKGRVIVEGFIDFDYEITLLTVRHVDGTT
FCAPIGHRQVKGDYHESWQPQAMSAQALAESERVARAVTEALGGRGLFGVELFVKGDQVWFSEVSPRPHDTG
LVTLISQDLSEFALHARAILGLPIPVIRQLGPSASAVILVEGKSRQVAFANLGAALSEADTALRLFGKPEVD
GQRRMGVALARDESIDAARAKATRAAQAVRVEL*
AnnotationID:1606GeneID:1597
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 11:11:52
Gene Name:purT
Confidence Code:2
GeneProduct:phosphoribosylglycinamide formyltransferase 2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0027,COG0026
Secondary Functional Category(ies):
EC Number:2.1.2.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54989.1| (AE016861) phosphoribosylglycinamide formyltransferase 2
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 393

 Score =  684 bits (1765), Expect = 0.0
 Identities = 344/393 (87%), Positives = 369/393 (93%)

>dbj|BAB35982.1| (AP002559) phosphoribosylglycinamide formyltransferase 2
           [Escherichia coli O157:H7]
          Length = 392

 Score =  514 bits (1323), Expect = e-145
 Identities = 267/392 (68%), Positives = 308/392 (78%), Gaps = 1/392 (0%)






 
Structural Features:
COG0027, PurT, Formate-dependent phosphoribosylglycinamide formyltransferase 
(GAR transformylase) 
[Nucleotide transport and metabolism]
CD-Length = 394 residues, 100.0% aligned
Score =  644 bits (1663), Expect = 0.0
Identities = 287/394 (72%), Positives = 327/394 (82%), Gaps = 1/394 (0%)

COG0026, PurK, Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 
[Nucleotide transport and metabolism]
CD-Length = 375 residues,  96.3% aligned
Score =  193 bits (492), Expect = 6e-50
Identities = 107/374 (28%), Positives = 169/374 (45%), Gaps = 16/374 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20344




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31807




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1597_cdd.html


    		




 
URL:

















    ReferenceID:34268




  
Author/Investigator(s):
        Saxild HH, Jacobsen JH, Nygaard P.





  
Title:
        Functional analysis of the Bacillus subtilis purT gene encoding formate-dependent glycinamide ribonucleotide transformylase.




  
PubMed:
        7496533


MedLine:
        




    
Source:
Microbiology. 1995 Sep;141 ( Pt 9):2211-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7496533









           
Homologs By Global Alignment 

           

       



     
Gene ID:1597
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2824
                           PA3751_tr
                           translation of PA3751
                           393
                           99.99
                           99.99
                           0
                           1985.0
     

     
     
88145
                           gb|AAG07138.1|AE004794_3
                           (AE004794) phosphoribosylglycinamide formyltransferase 2 [Pseudomonas aeruginosa PAO1]
                           393
                           99.99
                           99.99
                           0
                           1985.0
     

     
     
88146
                           gb|AAO54989.1|
                           (AE016861) phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae pv. tomato str. DC3000]
                           393
                           87.53
                           93.89
                           0
                           1765.0
     

     
     
88147
                           gb|AAN67079.1|AE016337_2
                           (AE016779) phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida KT2440]
                           393
                           84.73
                           92.11
                           0
                           1720.0
     

     
     
88149
                           gb|AAM40436.1|
                           (AE012212) phosphoribosylglycinamide formyltransferase 2 [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           401
                           72.06
                           79.30
                           9
                           1428.0
     

     






      

          
GC ORFID: 44599How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3751Glimmer Score: 

          
Start: 3600438Stop: 3599257

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3751 translation of PA3751Homolog Bit Score 769.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4555 (ORF: BLASTX 687.0), t_PA3751 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGTATCGGTACCCCCCTGTCGCCGAGCGCGACCCGCGTCCTTCTCTGTGGCTCCGGCGAGCTGGGC 
AAGGAAGTCGCCATCGAGCTGCAACGCCTGGGTTGCGAAGTGATCGCCGTCGATCGCTATGGCAACGCGCCG 
GCCATGCAGGTGGCACATCGCAGCCACGTGATCAGCATGCTCGACGGTGCCGCCCTGCGCGCGGTGATCGAG 
CAGGAGAAGCCGCACTACATCGTGCCGGAGATCGAGGCCATCGCCACCGCGACCCTGGTCGAGCTGGAGGCC 
GAAGGCTACACCGTGGTGCCCACCGCCCGCGCCGCGCAACTGACCATGAACCGCGAGGGTATCCGCCGGCTG 
GCTGCCGAGGAGCTCGGCTTGCCGACCTCGCCCTATCACTTCGCCGATACCTTCGAGGACTACCGCCGTGGC 
GTCGAGCGCGTCGGCTACCCCTGCGTGGTGAAGCCGATCATGAGTTCGTCTGGCAAGGGCCAGAGCGTCCTG 
AAAGGCCCCGACGACCTGCAGGCGGCCTGGGACTATGCCCAGGAAGGCGGGCGCGCCGGCAAGGGCCGGGTG 
ATCGTCGAGGGCTTCATCGATTTCGACTACGAAATCACCCTGCTCACCGTGCGCCACGTCGACGGCACCACT 
TTCTGCGCGCCGATCGGTCACCGCCAGGTCAAGGGTGACTACCACGAGTCCTGGCAGCCGCAGGCGATGAGC 
GCGCAGGCCCTGGCCGAGTCCGAGCGGGTCGCCCGGGCAGTGACCGAGGCCCTCGGCGGACGCGGGCTGTTC 
GGCGTCGAACTGTTCGTCAAGGGCGACCAGGTGTGGTTCAGCGAGGTGTCGCCGCGACCGCACGATACCGGC 
CTGGTGACCCTGATTTCCCAGGATCTTTCCGAGTTCGCGCTGCACGCGCGGGCGATCCTCGGCCTGCCGATC 
CCGGTGATCCGCCAGCTTGGCCCGTCGGCCTCGGCGGTGATCCTGGTGGAAGGCAAGTCCCGGCAGGTCGCT 
TTCGCCAACCTCGGCGCCGCGCTGAGCGAGGCGGATACGGCGCTACGCCTGTTCGGCAAGCCGGAAGTGGAT 
GGCCAGCGGCGGATGGGCGTGGCCCTGGCGCGCGACGAGTCGATCGACGCCGCTCGCGCCAAGGCGACCCGG 
GCCGCCCAGGCGGTTCGCGTCGAACTCTGA