ViewGene
Locus Name:
GeneID:
Location:

GeneID:1596
TrivialName: PA14_34190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34190
PAO1 Ortholog Locus:PA2356
Sequence Length:1146
Protein Length:381
Start: 3039896
Stop: 3041041
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05744.1|AE004661_11 (AE004661) methanesulfonate sulfonatase MsuD [Pseudomonas aeruginosa PAO1]
Identities = 381/381 (100%), Positives = 381/381 (100%)
Sequence:
ATGAACGTGTTCTGGTTCCTCCCGACCCACGGCGATGGCCACTTCCTCGGCACCAGCCAGGGCGCGCGGCCG
GTCTCGCTGCCTTACCTGAAGCAGGTGGCTCAGGCGGCCGACAGCCTCGGCTACCACGGCGTGCTGATCCCC
ACCGGACGCTCCTGCGAGGACTCCTGGGTGGTGGCCTCGGCGCTGGCGCCGCTGACCGAGCGCCTGCGCTTC
CTGGTGGCGATCCGTCCGGGAATCGTTTCGCCGACCGTCTCGGCGCGGATGGCGGCGACCCTCGACCGCCTG
TCCGGCGGGCGCCTGCTGATCAACGTGGTCACCGGCGGCGATCCCGACGAGAACCGCGGCGACGGCATCCAC
CTCGGCCACGCCGAGCGCTACGAGGTCACCGACGAGTTCCTTCGGGTCTGGCGGCGCGTCCTGCAGGGCGAG
GCGGTGGACTTCCACGGCAAGCACATCCACGTGGAGAACGCCAAGGCGCTCTATCCGCCGCTGCAACGGCCG
TATCCGCCGCTGTACTTCGGCGGTTCCTCGGAGGCCGCCCACGAACTGGCCGGCGAACAGGTGGACGTCTAC
CTGACCTGGGGCGAGCCGTTGCCGGCGGTGGCGGCGAAGATCGCCGACGTGCGCCAGCGAGCGGCTCGCCAT
GGGCGTACGGTGAAGTTCGGCATCCGCCTGCATGTGATCGTCCGCGAAACCGCCGAAGAAGCCTGGCGCGCC
GCGGACAGGCTGATCGAACACATCTCCGACGAGACCATCGCCGCCGCGCAGCAGTCCTTCGCCCGTTTCGAC
TCCGAAGGCCAGCGACGCATGGCCGCGCTGCACGGCGGCCGCCGCGATCGCCTGGAGATCCAGCCGAACCTC
TGGGCCGGGGTCGGCCTGGTGCGCGGCGGCGCCGGCACCGCGCTGGTCGGCGATCCGCGGCAGGTGGCGGAG
CGCATCGGGGAGTACGCCGAGCTTGGCATCGACAGCTTCATCTTCTCCGGCTATCCGCACCTGGAAGAGGCC
TACCGCTTCGCCGAACTGGTCTTCCCGCTGCTGCCCGAACCCTACGCCAGCCTGGCCGGCCGTGGGCTGACC
AATCTGACCGGGCCGTTCGGCGAAATGATCGCCAACGACGTGCTGCCGGCTCGCGCCGGCGCTTGA
Translation:
MNVFWFLPTHGDGHFLGTSQGARPVSLPYLKQVAQAADSLGYHGVLIPTGRSCEDSWVVASALAPLTERLRF
LVAIRPGIVSPTVSARMAATLDRLSGGRLLINVVTGGDPDENRGDGIHLGHAERYEVTDEFLRVWRRVLQGE
AVDFHGKHIHVENAKALYPPLQRPYPPLYFGGSSEAAHELAGEQVDVYLTWGEPLPAVAAKIADVRQRAARH
GRTVKFGIRLHVIVRETAEEAWRAADRLIEHISDETIAAAQQSFARFDSEGQRRMAALHGGRRDRLEIQPNL
WAGVGLVRGGAGTALVGDPRQVAERIGEYAELGIDSFIFSGYPHLEEAYRFAELVFPLLPEPYASLAGRGLT
NLTGPFGEMIANDVLPARAGA*
AnnotationID:1605GeneID:1596
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 07:07:29
Gene Name:msuD
Confidence Code:1
GeneProduct:FMNH2-dependent methanesulfonate sulfonatase
Cell Localization:()
Synonyms:ssuD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:FMNH2-dependent alkanesulfonate monooxygenase
Functional Category Confidence Code:5
COGs:COG2141
Secondary Functional Category(ies):
EC Number:1.14.14.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56941.1| (AE016868) alkanesulfonate monooxygenase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 379

 Score =  667 bits (1722), Expect = 0.0
 Identities = 322/376 (85%), Positives = 354/376 (94%)

>dbj|BAC00973.1| (AB086390) FMNH2-dependent alkanesulfonate monooxygenase
           [Pseudomonas putida]
          Length = 382

 Score =  544 bits (1401), Expect = e-154
 Identities = 264/376 (70%), Positives = 309/376 (82%), Gaps = 2/376 (0%)

>gb|AAF81704.1|AF250867_2 (AF250867) sulfonate monooxygenase [Pseudomonas sp. Blue1]
          Length = 382

 Score =  543 bits (1399), Expect = e-154
 Identities = 265/376 (70%), Positives = 306/376 (81%), Gaps = 2/376 (0%)






 
Structural Features:
COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin 
reductase and related flavin-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 336 residues,  98.2% aligned
Score =  210 bits (534), Expect = 3e-55
Identities = 138/348 (39%), Positives = 164/348 (47%), Gaps = 31/348 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3195




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20342




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32904




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1596_cdd.html


    		




 
URL:

















    ReferenceID:34480




  
Author/Investigator(s):
        Kertesz MA, Schmidt-Larbig K, Wuest T.





  
Title:
        A novel reduced flavin mononucleotide-dependent methanesulfonate sulfonatase encoded by the sulfur-regulated msu operon of Pseudomonas aeruginosa.




  
PubMed:
        10049377


MedLine:
        




    
Source:
J Bacteriol. 1999 Mar;181(5):1464-73.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10049377









           
Homologs By Global Alignment 

           

       



     
Gene ID:1596
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2822
                           PA2356_tr
                           translation of PA2356
                           381
                           99.99
                           99.99
                           0
                           1986.0
     

     
     
88105
                           gb|AAG05744.1|AE004661_11
                           (AE004661) methanesulfonate sulfonatase MsuD [Pseudomonas aeruginosa PAO1]
                           381
                           99.99
                           99.99
                           0
                           1986.0
     

     
     
88106
                           gb|AAB82564.1|
                           (AF026067) FMNH2-dependent methanesulfonate sulfonatase [Pseudomonas aeruginosa]
                           381
                           99.73
                           99.73
                           0
                           1978.0
     

     
     
88107
                           gb|AAO56941.1|
                           (AE016868) alkanesulfonate monooxygenase [Pseudomonas syringae pv. tomato str. DC3000]
                           381
                           85.03
                           93.43
                           2
                           1720.0
     

     
     
2823
                           PA3444_tr
                           translation of PA3444
                           391
                           70.33
                           81.58
                           19
                           1445.0
     

     






      

          
GC ORFID: 44598How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2356Glimmer Score: 

          
Start: 1914020Stop: 1912875

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2356 translation of PA2356Homolog Bit Score 769.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1289 (ORF: BLASTX 669.0), t_PA3444 (ORF: BLASTX 559.0), psyr_15may02_Scaffold8_revised_gene7653 (ORF: BLASTX 233.0), t_PA2356 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGTGTTCTGGTTCCTCCCGACCCACGGCGATGGCCACTTCCTCGGCACCAGCCAGGGCGCGCGGCCG 
GTCTCGCTGCCTTACCTGAAGCAGGTGGCTCAGGCGGCCGACAGCCTCGGCTACCACGGCGTGCTGATCCCC 
ACCGGACGCTCCTGCGAGGACTCCTGGGTGGTGGCCTCGGCGCTGGCGCCGCTGACCGAGCGCCTGCGCTTC 
CTGGTGGCGATCCGTCCGGGAATCGTTTCGCCGACCGTCTCGGCGCGGATGGCGGCGACCCTCGACCGCCTG 
TCCGGCGGGCGCCTGCTGATCAACGTGGTCACCGGCGGCGATCCCGACGAGAACCGCGGCGACGGCATCCAC 
CTCGGCCACGCCGAGCGCTACGAGGTCACCGACGAGTTCCTTCGGGTCTGGCGGCGCGTCCTGCAGGGCGAG 
GCGGTGGACTTCCACGGCAAGCACATCCACGTGGAGAACGCCAAGGCGCTCTATCCGCCGCTGCAACGGCCG 
TATCCGCCGCTGTACTTCGGCGGTTCCTCGGAGGCCGCCCACGAACTGGCCGGCGAACAGGTGGACGTCTAC 
CTGACCTGGGGCGAGCCGTTGCCGGCGGTGGCGGCGAAGATCGCCGACGTGCGCCAGCGAGCGGCTCGCCAT 
GGGCGTACGGTGAAGTTCGGCATCCGCCTGCATGTGATCGTCCGCGAAACCGCCGAAGAAGCCTGGCGCGCC 
GCGGACAGGCTGATCGAACACATCTCCGACGAGACCATCGCCGCCGCGCAGCAGTCCTTCGCCCGTTTCGAC 
TCCGAAGGCCAGCGACGCATGGCCGCGCTGCACGGCGGCCGCCGCGATCGCCTGGAGATCCAGCCGAACCTC 
TGGGCCGGGGTCGGCCTGGTGCGCGGCGGCGCCGGCACCGCGCTGGTCGGCGATCCGCGGCAGGTGGCGGAG 
CGCATCGGGGAGTACGCCGAGCTTGGCATCGACAGCTTCATCTTCTCCGGCTATCCGCACCTGGAAGAGGCC 
TACCGCTTCGCCGAACTGGTCTTCCCGCTGCTGCCCGAACCCTACGCCAGCCTGGCCGGCCGTGGGCTGACC 
AATCTGACCGGGCCGTTCGGCGAAATGATCGCCAACGACGTGCTGCCGGCTCGCGCCGGCGCTTGA