ViewGene
Locus Name:
GeneID:
Location:

GeneID:1595
TrivialName: PA14_39830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39830
PAO1 Ortholog Locus:PA1909
Sequence Length:1152
Protein Length:383
Start: 3550519
Stop: 3551670
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05297.1|AE004617_1 (AE004617) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 383/383 (100%), Positives = 383/383 (100%)
Sequence:
ATGACCGCGAAAACCCTGCGCACCTGGTACCTGGTGCACAAATGGACCAGCCTGATCTCCACGATCTTCCTG
CTGATGCTTTGCCTCACCGGGTTGCCGCTGATCTTCCACGAGGAGATCGAGCACTACTTCGAGCCGCATCCG
CAGCTCGAGCCGCTCACTGCCGAGTCGCCGCGCATCGACTACGACGACGTGATCGCCCGCGCCCTGGCCGCC
CGGCCGGGCGAAGTGGTGCGCTTCCTGGTATTCGAAAAGGACGACCCGCTGGGCCTGGTGATCAGCGCGCCG
AGCCTGGTACCGCCGCCGGAGAACGGTCACATGCAGCCGTTCGACGCGCGCACCGGGGAATTCTTCGACGCG
CTGCCGCCGCCGGGCGGCTTCATGTACCTGATGCTGAAGCTGCATACCGACCTGTTCCTCGGCCTGCCCGGC
TACCTGTTCCTCGGCCTGATGGGCCTGCTGCTGGTGGCCTCGCTGGTGTCCGGGGTGGTGGTATACACGCCG
TTCATGCGCAAGCTGGACTTCGCCACGGTACGCGCCGAACGCAGCCGTCGTCTGAAGTGGCTGGACCTGCAC
AACCTGCTGGGCATCGTCACCCTGTCCTGGGTACTGGTGGTCGGCGTGACCGGGGTGATCAACACCCTGGCC
CTGCCGATCCTGATGCTCTGGCAAGGCGGGCAGTTGGCGGAAATGACCGCGCCCTACAAGGACGCGCCACCG
CTACAGCGCCTCGGCTCGCTCGACGCGGCCCTGGCCACGGCACGCCGGGCGGCGCCGGACATGGAGGTCAGC
TTCGTCGGCTTCCCCGGCACCCAGTTCAGCAGCCAGCATCACTATGCGGTGTTCATGCGCGGCAACACGCCG
CTCACCGAGCGCCTGCTGAAGCCGGCACTGATCGACGCGCAGAGCGGCGAACTCACCGACATGCGCGAGATG
CCGCTGTACGTGAAGACGCTCCTGCTGTCGCAGCCGCTGCACTTCGGCGACTACGGCGGCATGCCGCTGAAG
ATCGTCTGGGCGCTGCTCGACCTCGTCAGCATCGTCATCCTCGCCAGCGGTCTCTACCTCTGGCTCGGCCGA
CGCAAGACGCCATTGGAGAAGCGCCTGGCGGAACTGCCGGACGGCAGCCTGGCGACGGAGGGCAAGGCATGA
Translation:
MTAKTLRTWYLVHKWTSLISTIFLLMLCLTGLPLIFHEEIEHYFEPHPQLEPLTAESPRIDYDDVIARALAA
RPGEVVRFLVFEKDDPLGLVISAPSLVPPPENGHMQPFDARTGEFFDALPPPGGFMYLMLKLHTDLFLGLPG
YLFLGLMGLLLVASLVSGVVVYTPFMRKLDFATVRAERSRRLKWLDLHNLLGIVTLSWVLVVGVTGVINTLA
LPILMLWQGGQLAEMTAPYKDAPPLQRLGSLDAALATARRAAPDMEVSFVGFPGTQFSSQHHYAVFMRGNTP
LTERLLKPALIDAQSGELTDMREMPLYVKTLLLSQPLHFGDYGGMPLKIVWALLDLVSIVILASGLYLWLGR
RKTPLEKRLAELPDGSLATEGKA*
AnnotationID:1604GeneID:1595
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:49
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1909
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3182,pfam03929
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE36930.1| (BX640427) putative membrane protein [Bordetella parapertussis]
          Length = 393

 Score =  390 bits (1002), Expect = e-108
 Identities = 199/377 (52%), Positives = 251/377 (66%), Gaps = 7/377 (1%)

>emb|CAE41205.1| (BX640413) putative membrane protein [Bordetella pertussis]
          Length = 393

 Score =  389 bits (1000), Expect = e-107
 Identities = 199/377 (52%), Positives = 251/377 (66%), Gaps = 7/377 (1%)

>gb|AAN65980.1|AE016227_1 (AE016775) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 370

 Score =  385 bits (988), Expect = e-106
 Identities = 183/369 (49%), Positives = 254/369 (68%), Gaps = 1/369 (0%)








 
Structural Features:
COG3182, PiuB, Uncharacterized iron-regulated membrane protein
CD-Length = 442 residues,  92.1% aligned
Score =  258 bits (660), Expect = 8e-70
Identities = 119/412 (28%), Positives = 163/412 (39%), Gaps = 34/412 (8%)

pfam03929, DUF337, Uncharacterized iron-regulated membrane protein 
CD-Length = 368 residues, 100.0% aligned
Score =  255 bits (652), Expect = 8e-69
Identities = 120/369 (32%), Positives = 163/369 (44%), Gaps = 13/369 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3193




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20340




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37032




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1595_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1595
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2821
                           PA1909_tr
                           translation of PA1909
                           383
                           99.99
                           99.99
                           0
                           1985.0
     

     
     
88095
                           gb|AAG05297.1|AE004617_1
                           (AE004617) hypothetical protein PA1909 [Pseudomonas aeruginosa PAO1]
                           383
                           99.99
                           99.99
                           0
                           1985.0
     

     
     
88096
                           emb|CAD86344.1|
                           (BX321864) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           412
                           51.21
                           66.01
                           45
                           1095.0
     

     
     
88103
                           emb|CAE28854.1|
                           (BX572604) Uncharacterized iron-regulated membrane protein DUF337 [Rhodopseudomonas palustris CGA009]
                           383
                           51.17
                           66.05
                           12
                           980.0
     

     
     
88099
                           emb|CAE41205.1|
                           (BX640413) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           400
                           50.50
                           64.00
                           24
                           1000.0
     

     






      

          
GC ORFID: 44597How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1909Glimmer Score: 

          
Start: 1403392Stop: 1402241

          
Length: 1152


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1909 translation of PA1909Homolog Bit Score 769.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6629 (ORF: BLASTX 390.0), t_PA1909 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCGAAAACCCTGCGCACCTGGTACCTGGTGCACAAATGGACCAGCCTGATCTCCACGATCTTCCTG 
CTGATGCTTTGCCTCACCGGGTTGCCGCTGATCTTCCACGAGGAGATCGAGCACTACTTCGAGCCGCATCCG 
CAGCTCGAGCCGCTCACTGCCGAGTCGCCGCGCATCGACTACGACGACGTGATCGCCCGCGCCCTGGCCGCC 
CGGCCGGGCGAAGTGGTGCGCTTCCTGGTATTCGAAAAGGACGACCCGCTGGGCCTGGTGATCAGCGCGCCG 
AGCCTGGTACCGCCGCCGGAGAACGGTCACATGCAGCCGTTCGACGCGCGCACCGGGGAATTCTTCGACGCG 
CTGCCGCCGCCGGGCGGCTTCATGTACCTGATGCTGAAGCTGCATACCGACCTGTTCCTCGGCCTGCCCGGC 
TACCTGTTCCTCGGCCTGATGGGCCTGCTGCTGGTGGCCTCGCTGGTGTCCGGGGTGGTGGTATACACGCCG 
TTCATGCGCAAGCTGGACTTCGCCACGGTACGCGCCGAACGCAGCCGTCGTCTGAAGTGGCTGGACCTGCAC 
AACCTGCTGGGCATCGTCACCCTGTCCTGGGTACTGGTGGTCGGCGTGACCGGGGTGATCAACACCCTGGCC 
CTGCCGATCCTGATGCTCTGGCAAGGCGGGCAGTTGGCGGAAATGACCGCGCCCTACAAGGACGCGCCACCG 
CTACAGCGCCTCGGCTCGCTCGACGCGGCCCTGGCCACGGCACGCCGGGCGGCGCCGGACATGGAGGTCAGC 
TTCGTCGGCTTCCCCGGCACCCAGTTCAGCAGCCAGCATCACTATGCGGTGTTCATGCGCGGCAACACGCCG 
CTCACCGAGCGCCTGCTGAAGCCGGCACTGATCGACGCGCAGAGCGGCGAACTCACCGACATGCGCGAGATG 
CCGCTGTACGTGAAGACGCTCCTGCTGTCGCAGCCGCTGCACTTCGGCGACTACGGCGGCATGCCGCTGAAG 
ATCGTCTGGGCGCTGCTCGACCTCGTCAGCATCGTCATCCTCGCCAGCGGTCTCTACCTCTGGCTCGGCCGA 
CGCAAGACGCCATTGGAGAAGCGCCTGGCGGAACTGCCGGACGGCAGCCTGGCGACGGAGGGCAAGGCATGA