ViewGene
Locus Name:
GeneID:
Location:

GeneID:1592
TrivialName: PA14_09700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09700
PAO1 Ortholog Locus:PA4190
Sequence Length:1206
Protein Length:401
Start: 835038
Stop: 833833
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07577.1|AE004835_6 (AE004835) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
Identities = 390/395 (98%), Positives = 394/395 (99%)
Sequence:
ATGACGGACAACCATATCGATGTACTGATCAACGGCTGCGGCATCGGCGGGGCGATGCTCGCCTACCTGCTC
GGCCGCCAGGGCCACCGCGTGGTGGTAGTGGAGCAGGCACGGCGCGAACGCGCGATCAACGGCGCCGACCTG
CTCAAGCCGGCCGGCATCCGGGTGGTCGAGGCGGCCGGGTTGTTGGCCGAGGTGACCCGTCGCGGCGGGCGG
GTCCGCCATGAGCTGGAGGTCTATCACGACGGCGAGCTGCTTCGCTATTTCAACTATTCCAGCGTCGACGCG
CGCGGCTATTTCATCCTCATGCCCTGCGAGTCGCTGCGCCGCCTGGTACTGGAAAAGATCGACGGCGAAGCG
ACCGTCGAGATGCTGTTCGAGACCCGCATCGAAGCGGTGCAGCGCGACGAGCGCCACGCGATCGACCAGGTG
CGCCTGAACGACGGCCGCGTGCTGCGCCCGCGGGTGGTGGTGGGCGCCGACGGTATCGCCTCCTACGTGCGC
CGCCGGCTGCTcGATATCGAGGTGGAGCGCCACCCCTACCCGTCGCCGATGCTGGTCGGCACCTTCGCCCTG
GCGCCCTGCGTGGCCGAGCGCAACCGCCTGTACGTGGACGCGCAGGGCGGGCTGGCCTATTTCTACCCGATC
GGTTTCGACCGCGCGCGACTGGTGGTGAGCTTCCCCAGGGAAGAGTCGCGCGAGCTGATGGCTGACACCCGC
GGCGAGTCGCTGCGCCGGCGCTTGCAACGCTTCGTCGGCGACGAGAGCGCCGAGGCGATCGCCGCCGTCACC
GGCACTTCGCGCTTCAAGGGCATCCCCATCGGCTACCTGAACCTGGATCGTTACTGGGCGGACAACGTGGCG
ATGCTCGGCGACGCCATCCACAACGTGCATCCGATCACCGGCCAGGGCATGAACCTGGCCATCGAGGACGCC
AGCGCCCTGGCCGACGCCCTCGACCTGGCCTTGCGCGACGCCTGCGCGCTGGAGGATGCCCTGGCCGGCTAC
CAGGCCGAACGCTTCCCGGTGAACCAGGCGATCGTCTCCTATGGCCATGCGCTGGCCACCAGCCTGGAGGAT
CGCCAGCGCTTCGCCGGGGTCTTCGACACCGCCCTGCAGGGCAGCAGCCGTACGCCGGAAGCCCTGGGCGGC
GAGCGTTCCTATCAGCCGGTGCGGTCGCCGTCCCTGGAGGCTCCGCGCGGCTGA
Translation:
MTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGR
VRHELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQV
RLNDGRVLRPRVVVGADGIASYVRRRLLDIEVERHPYPSPMLVGTFALAPCVAERNRLYVDAQGGLAYFYPI
GFDRARLVVSFPREESRELMADTRGESLRRRLQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDRYWADNVA
MLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLED
RQRFAGVFDTALQGSSRTPEALGGERSYQPVRSPSLEAPRG*
AnnotationID:1601GeneID:1592
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 21:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative FAD-dependent monooxygenase
Cell Localization:()
Synonyms:pqsL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:putative 2-polyprenyl-6-methoxyphenol hydroxylase
Functional Category Confidence Code:5
COGs:COG0654
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related 
FAD-dependent oxidoreductases 
[Coenzyme metabolism]
CD-Length = 387 residues,  93.8% aligned
Score =  201 bits (511), Expect = 2e-52
Identities = 111/370 (30%), Positives = 153/370 (41%), Gaps = 7/370 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20334




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36895




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1592_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1592
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2817
                           PA4190_tr
                           translation of PA4190
                           401
                           98.00
                           98.75
                           3
                           1991.0
     

     
     
88040
                           gb|AAG07577.1|AE004835_6
                           (AE004835) probable FAD-dependent monooxygenase [Pseudomonas aeruginosa PAO1]
                           401
                           98.00
                           98.75
                           3
                           1991.0
     

     






      

          
GC ORFID: 44594How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4190Glimmer Score: 

          
Start: 4118899Stop: 4120104

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4190 translation of PA4190Homolog Bit Score 770.0

          
Other Homologs:  t_PA4190 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGACAACCATATCGATGTACTGATCAACGGCTGCGGCATCGGCGGGGCGATGCTCGCCTACCTGCTC 
GGCCGCCAGGGCCACCGCGTGGTGGTAGTGGAGCAGGCACGGCGCGAACGCGCGATCAACGGCGCCGACCTG 
CTCAAGCCGGCCGGCATCCGGGTGGTCGAGGCGGCCGGGTTGTTGGCCGAGGTGACCCGTCGCGGCGGGCGG 
GTCCGCCATGAGCTGGAGGTCTATCACGACGGCGAGCTGCTTCGCTATTTCAACTATTCCAGCGTCGACGCG 
CGCGGCTATTTCATCCTCATGCCCTGCGAGTCGCTGCGCCGCCTGGTACTGGAAAAGATCGACGGCGAAGCG 
ACCGTCGAGATGCTGTTCGAGACCCGCATCGAAGCGGTGCAGCGCGACGAGCGCCACGCGATCGACCAGGTG 
CGCCTGAACGACGGCCGCGTGCTGCGCCCGCGGGTGGTGGTGGGCGCCGACGGTATCGCCTCCTACGTGCGC 
CGCCGGCTGCTcGATATCGAGGTGGAGCGCCACCCCTACCCGTCGCCGATGCTGGTCGGCACCTTCGCCCTG 
GCGCCCTGCGTGGCCGAGCGCAACCGCCTGTACGTGGACGCGCAGGGCGGGCTGGCCTATTTCTACCCGATC 
GGTTTCGACCGCGCGCGACTGGTGGTGAGCTTCCCCAGGGAAGAGTCGCGCGAGCTGATGGCTGACACCCGC 
GGCGAGTCGCTGCGCCGGCGCTTGCAACGCTTCGTCGGCGACGAGAGCGCCGAGGCGATCGCCGCCGTCACC 
GGCACTTCGCGCTTCAAGGGCATCCCCATCGGCTACCTGAACCTGGATCGTTACTGGGCGGACAACGTGGCG 
ATGCTCGGCGACGCCATCCACAACGTGCATCCGATCACCGGCCAGGGCATGAACCTGGCCATCGAGGACGCC 
AGCGCCCTGGCCGACGCCCTCGACCTGGCCTTGCGCGACGCCTGCGCGCTGGAGGATGCCCTGGCCGGCTAC 
CAGGCCGAACGCTTCCCGGTGAACCAGGCGATCGTCTCCTATGGCCATGCGCTGGCCACCAGCCTGGAGGAT 
CGCCAGCGCTTCGCCGGGGTCTTCGACACCGCCCTGCAGGGCAGCAGCCGTACGCCGGAAGCCCTGGGCGGC 
GAGCGTTCCTATCAGCCGGTGCGGTCGCCGTCCCTGGAGGCTCCGCGCGGCTGA