ViewGene
Locus Name:
GeneID:
Location:

GeneID:1591
TrivialName: PA14_27470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27470
PAO1 Ortholog Locus:PA2831
Sequence Length:1128
Protein Length:375
Start: 2385382
Stop: 2384255
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06219.1|AE004710_1 (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 371/375 (98%), Positives = 373/375 (99%)
Sequence:
ATGCAGATCCGCGCCGATTTCGACAGCGGCAACATCCAGGTCATCGATGCCAGCGATCCCCGCCGGATCCGC
CTGGCGATCCGTCCCGACCTGGCCAGCCAGCATTTCCAGTGGTTCCACTTCAAGGTCGAGGGCATGGCTCCC
GCCACCGAGCACCGCTTCACCCTGGTCAACGCCGGCCAGTCGGCCTACAGCCATGCCTGGAGCGGCTACCAG
GCAGTCGCCTCGTACGATGGCGAACGCTGGTTCCGCGTACCGTCGCAATACGACGCCGACGGCCTGCATTTC
CAGCTGGAACCGGAGGAAAGCGAAGTCCGCTTCGCCTACTTCAAGCCCTACAGCCGCGAACGGCATGCCCGC
CTGGTCGAACGTGCGCTCGGTATCGAGGGCGTCGAACGGCTCGCCGTCGGCACCAGCGTGCAAGGCCGCGAC
ATCGAATTGCTGCGGGTCAGGCGCCATCCCGACAGCCACCTGAAGCTGTGGATCATCGCCCAGCAGCATCCC
GGCGAACACATGGCCGAATGGTTCATGGAAGGCCTGATCGAGCGCCTGCAGCGGCCGGACGACACGGAAATG
CAGCGCCTGCTGGAAAAGGCCGACCTGTACCTGGTGCCGAACATGAACCCGGACGGCGCGTTCCACGGCAAC
CTGCGCACCAACGCCGCCGGCCAGGATCTCAACCGGGCCTGGCTGGAGCCGAGCGCCGAGCGCAGCCCGGAA
GTCTGGTTCGTCCAGCAGGAGATGAAGCACCATGGCGTCGACCTGTTCCTCGATATCCACGGCGACGAGGAG
ATCCCCCACGTATTCGCCGCCGGCTGCGAGGGCAACCCGGGCTATACGCCCCGCCTGGAACGGCTCGAGCAA
CGCTTCCGCGAGGAACTGATGGCGCGCGGCGAATTCCAGATCCGCCATGGCTACCCACGCAGTGCGCCGGGC
CAGGCCAACCTGGCGCTGGCCTGCAACTTCGTCGGGCAGACCTACGACTGCCTGGCGTTCACCATCGAGATG
CCGTTCAAGGACCACGACGACAACCCGGAGCCCGGGACCGGCTGGTCCGGCGCCCGCTCCAAGCGGCTCGGC
CAGGACGTCCTGAGCACCCTTGCGGTGCTGGTCGACGAACTCCGCTGA
Translation:
MQIRADFDSGNIQVIDASDPRRIRLAIRPDLASQHFQWFHFKVEGMAPATEHRFTLVNAGQSAYSHAWSGYQ
AVASYDGERWFRVPSQYDADGLHFQLEPEESEVRFAYFKPYSRERHARLVERALGIEGVERLAVGTSVQGRD
IELLRVRRHPDSHLKLWIIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAFHGN
LRTNAAGQDLNRAWLEPSAERSPEVWFVQQEMKHHGVDLFLDIHGDEEIPHVFAAGCEGNPGYTPRLERLEQ
RFREELMARGEFQIRHGYPRSAPGQANLALACNFVGQTYDCLAFTIEMPFKDHDDNPEPGTGWSGARSKRLG
QDVLSTLAVLVDELR*
AnnotationID:1600GeneID:1591
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 21:09:02
Gene Name:
Confidence Code:3
GeneProduct:putative zinc carboxypeptidase
Cell Localization:()
Synonyms:PA2831
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2866
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN55458.1|AE015683_5 (AE015683) zinc carboxypeptidase domain protein [Shewanella
           oneidensis MR-1]
          Length = 375

 Score =  358 bits (918), Expect = 4e-98
 Identities = 181/376 (48%), Positives = 244/376 (64%), Gaps = 2/376 (0%)







 
Structural Features:
COG2866, Predicted carboxypeptidase [Amino acid transport and metabolism]
CD-Length = 374 residues,  99.5% aligned
Score =  296 bits (758), Expect = 3e-81
Identities = 147/383 (38%), Positives = 192/383 (50%), Gaps = 22/383 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20332




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36188




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1591_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1591
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2816
                           PA2831_tr
                           translation of PA2831
                           375
                           98.93
                           99.46
                           0
                           1989.0
     

     
     
88031
                           gb|AAG06219.1|AE004710_1
                           (AE004710) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           375
                           98.93
                           99.46
                           0
                           1989.0
     

     
     
88032
                           gb|AAN67977.1|AE016430_1
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           383
                           62.14
                           75.19
                           9
                           1282.0
     

     
     
88033
                           emb|CAB84527.1|
                           (AL162755) hypothetical protein NMA1274 [Neisseria meningitidis Z2491]
                           380
                           50.00
                           67.63
                           9
                           976.0
     

     
     
88034
                           gb|AAF41468.1|
                           (AE002458) conserved hypothetical protein [Neisseria meningitidis MC58]
                           380
                           50.00
                           67.63
                           9
                           974.0
     

     






      

          
GC ORFID: 44593How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2831Glimmer Score: 

          
Start: 2568545Stop: 2569672

          
Length: 1128


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2831 translation of PA2831Homolog Bit Score 770.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5834 (ORF: BLASTX 485.0), t_PA2831 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGATCCGCGCCGATTTCGACAGCGGCAACATCCAGGTCATCGATGCCAGCGATCCCCGCCGGATCCGC 
CTGGCGATCCGTCCCGACCTGGCCAGCCAGCATTTCCAGTGGTTCCACTTCAAGGTCGAGGGCATGGCTCCC 
GCCACCGAGCACCGCTTCACCCTGGTCAACGCCGGCCAGTCGGCCTACAGCCATGCCTGGAGCGGCTACCAG 
GCAGTCGCCTCGTACGATGGCGAACGCTGGTTCCGCGTACCGTCGCAATACGACGCCGACGGCCTGCATTTC 
CAGCTGGAACCGGAGGAAAGCGAAGTCCGCTTCGCCTACTTCAAGCCCTACAGCCGCGAACGGCATGCCCGC 
CTGGTCGAACGTGCGCTCGGTATCGAGGGCGTCGAACGGCTCGCCGTCGGCACCAGCGTGCAAGGCCGCGAC 
ATCGAATTGCTGCGGGTCAGGCGCCATCCCGACAGCCACCTGAAGCTGTGGATCATCGCCCAGCAGCATCCC 
GGCGAACACATGGCCGAATGGTTCATGGAAGGCCTGATCGAGCGCCTGCAGCGGCCGGACGACACGGAAATG 
CAGCGCCTGCTGGAAAAGGCCGACCTGTACCTGGTGCCGAACATGAACCCGGACGGCGCGTTCCACGGCAAC 
CTGCGCACCAACGCCGCCGGCCAGGATCTCAACCGGGCCTGGCTGGAGCCGAGCGCCGAGCGCAGCCCGGAA 
GTCTGGTTCGTCCAGCAGGAGATGAAGCACCATGGCGTCGACCTGTTCCTCGATATCCACGGCGACGAGGAG 
ATCCCCCACGTATTCGCCGCCGGCTGCGAGGGCAACCCGGGCTATACGCCCCGCCTGGAACGGCTCGAGCAA 
CGCTTCCGCGAGGAACTGATGGCGCGCGGCGAATTCCAGATCCGCCATGGCTACCCACGCAGTGCGCCGGGC 
CAGGCCAACCTGGCGCTGGCCTGCAACTTCGTCGGGCAGACCTACGACTGCCTGGCGTTCACCATCGAGATG 
CCGTTCAAGGACCACGACGACAACCCGGAGCCCGGGACCGGCTGGTCCGGCGCCCGCTCCAAGCGGCTCGGC 
CAGGACGTCCTGAGCACCCTTGCGGTGCTGGTCGACGAACTCCGCTGA