ViewGene
Locus Name:
GeneID:
Location:

GeneID:1590
TrivialName: PA14_71180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71180
PAO1 Ortholog Locus:PA5390
Sequence Length:1155
Protein Length:384
Start: 6342017
Stop: 6340863
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08775.1|AE004951_9 (AE004951) probable peptidic bond hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 383/384 (99%), Positives = 383/384 (99%)
Sequence:
ATGCCCGGCAGCCGCGACATCCTCGCCGACCTGGTGGCCTTCGACACCGTCAGCCGCGAGTCCAACCTGGCG
CTGATCGACTACGTCCGCGACTACCTGGCGGGTTTCGGCGTCGACAGCGAACTGTTCTTCGACGCCGACGGC
CGCAAGGCCAATCTCTATGCCACCATCGGCCCCAGCGACCGTGGCGGCGTCTGCCTTTCCGGGCATACCGAC
GTGGTGCCGGCGGACGGCCAGGCCTGGAGCGTGCCGCCGTTCCGGCTCAGCGAGCGCGATGGTCGCCTCTAC
GGGCGTGGCACGGCGGACATGAAGGGCTACCTGGCCTGCGTGCTGGCGGCCGTCCCGGCGTTCCTCGCCGCG
CCGTTGCGCCTGCCGGTGCACCTGGCGTTCTCCTACGACGAGGAAGTCGGCTGCCTGGGCGTCCGTTCGCTG
CTCGCGGCGCTGGAGCGGCGTCCGCACAAGCCGTTGCTGTGCATCATCGGCGAGCCCACCGAGCTGAAGCCG
GTGCTCGGCCACAAGGGCAAGCTGGCCATGCGCTGCGAGGTGCACGGCGCGGCCTGCCATTCGGCCTACGCG
CCGCAGGGGGTGAATGCCATCGAATACGCCGCGCGGCTGATCGGCCGCCTCGGCGAGATCGGCGCGCGCCTG
GCGGCGCCGGAGCGCCACGACCGGCGTTTCGACCCGCCCTACTCGACGGTGCAGACCGGACTGATCCAGGGC
GGCCGGGCGCTGAACATCGTGCCCGCCGAGTGCCGCTTCGACTTCGAGGTCCGCGCGCTGCCGGCGGACGAC
CCGCGGCAGGTCGCCGAGGAACTCCGTGACTATGCCGAAAGCGAACTGCTGCCGCGGATGCGTGCGGTAGAG
CGAAGTACCGATATCCGCTTCACGCCGCTATCGGCCTATCCCGGCCTGCTCACCGCAGACGACAGCCAGGCG
GCGGAGCTGATCGGCCTGCTCAGCGGTTCGACGGATTTCTCCACCGTGGCCTTCGGCACCGAGGGCGGGCTG
TTCCACCAGGCCGGTATCCCGGCGGTGATCTGCGGTCCCGGCAGCATGGACCAGGGCCACAAGCCGGACGAG
TTCGTCAGCCTCGCTCAGCTCGAGGCGTGCGACGCCCTGCTGGCGCGCCTGGCGGCGTGGCTGCGGGAGCCT
TGA
Translation:
MPGSRDILADLVAFDTVSRESNLALIDYVRDYLAGFGVDSELFFDADGRKANLYATIGPSDRGGVCLSGHTD
VVPADGQAWSVPPFRLSERDGRLYGRGTADMKGYLACVLAAVPAFLAAPLRLPVHLAFSYDEEVGCLGVRSL
LAALERRPHKPLLCIIGEPTELKPVLGHKGKLAMRCEVHGAACHSAYAPQGVNAIEYAARLIGRLGEIGARL
AAPERHDRRFDPPYSTVQTGLIQGGRALNIVPAECRFDFEVRALPADDPRQVAEELRDYAESELLPRMRAVE
RSTDIRFTPLSAYPGLLTADDSQAAELIGLLSGSTDFSTVAFGTEGGLFHQAGIPAVICGPGSMDQGHKPDE
FVSLAQLEACDALLARLAAWLREP*
AnnotationID:1599GeneID:1590
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:16
Gene Name:
Confidence Code:3
GeneProduct:putative peptidic bond hydrolase
Cell Localization:()
Synonyms:PA5390
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative acetylornithine deacetylase
Functional Category Confidence Code:5
COGs:COG0624,pfam01546
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69172.1|AE016551_3 (AE016787) acetylornithine deacetylase, putative [Pseudomonas
           putida KT2440]
          Length = 391

 Score =  576 bits (1485), Expect = e-164
 Identities = 281/380 (73%), Positives = 322/380 (84%)

>emb|CAE35154.1| (BX640451) putative acetylornithine deacetylase [Bordetella
           bronchiseptica]
          Length = 390

 Score =  544 bits (1402), Expect = e-154
 Identities = 270/379 (71%), Positives = 306/379 (80%)

>emb|CAE44981.1| (BX640412) putative acetylornithine deacetylase [Bordetella
           pertussis]
          Length = 390

 Score =  536 bits (1382), Expect = e-152
 Identities = 267/379 (70%), Positives = 303/379 (79%)








 
Structural Features:
COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase 
and related deacylases 
[Amino acid transport and metabolism]
CD-Length = 409 residues,  94.4% aligned
Score =  247 bits (632), Expect = 1e-66
Identities = 125/387 (32%), Positives = 172/387 (44%), Gaps = 16/387 (4%)

pfam01546, Peptidase_M20, Peptidase family M20/M25/M40. 
CD-Length = 378 residues,  99.5% aligned
Score =  218 bits (556), Expect = 9e-58
Identities = 124/391 (31%), Positives = 168/391 (42%), Gaps = 32/391 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20330




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34706




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1590_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1590
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2815
                           PA5390_tr
                           translation of PA5390
                           384
                           99.73
                           99.73
                           0
                           1991.0
     

     
     
88015
                           gb|AAG08775.1|AE004951_9
                           (AE004951) probable peptidic bond hydrolase [Pseudomonas aeruginosa PAO1]
                           384
                           99.73
                           99.73
                           0
                           1991.0
     

     
     
88016
                           gb|AAN69172.1|AE016551_3
                           (AE016787) acetylornithine deacetylase, putative [Pseudomonas putida KT2440]
                           391
                           71.86
                           82.35
                           7
                           1478.0
     

     
     
88017
                           emb|CAE35154.1|
                           (BX640451) putative acetylornithine deacetylase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           390
                           69.23
                           78.71
                           6
                           1399.0
     

     
     
88018
                           emb|CAE44981.1|
                           (BX640412) putative acetylornithine deacetylase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           390
                           68.46
                           77.94
                           6
                           1379.0
     

     






      

          
GC ORFID: 44592How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5390Glimmer Score: 

          
Start: 5605706Stop: 5604552

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5390 translation of PA5390Homolog Bit Score 771.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3987 (ORF: BLASTX 335.0), t_PA5390 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCAGCCGCGACATCCTCGCCGACCTGGTGGCCTTCGACACCGTCAGCCGCGAGTCCAACCTGGCG 
CTGATCGACTACGTCCGCGACTACCTGGCGGGTTTCGGCGTCGACAGCGAACTGTTCTTCGACGCCGACGGC 
CGCAAGGCCAATCTCTATGCCACCATCGGCCCCAGCGACCGTGGCGGCGTCTGCCTTTCCGGGCATACCGAC 
GTGGTGCCGGCGGACGGCCAGGCCTGGAGCGTGCCGCCGTTCCGGCTCAGCGAGCGCGATGGTCGCCTCTAC 
GGGCGTGGCACGGCGGACATGAAGGGCTACCTGGCCTGCGTGCTGGCGGCCGTCCCGGCGTTCCTCGCCGCG 
CCGTTGCGCCTGCCGGTGCACCTGGCGTTCTCCTACGACGAGGAAGTCGGCTGCCTGGGCGTCCGTTCGCTG 
CTCGCGGCGCTGGAGCGGCGTCCGCACAAGCCGTTGCTGTGCATCATCGGCGAGCCCACCGAGCTGAAGCCG 
GTGCTCGGCCACAAGGGCAAGCTGGCCATGCGCTGCGAGGTGCACGGCGCGGCCTGCCATTCGGCCTACGCG 
CCGCAGGGGGTGAATGCCATCGAATACGCCGCGCGGCTGATCGGCCGCCTCGGCGAGATCGGCGCGCGCCTG 
GCGGCGCCGGAGCGCCACGACCGGCGTTTCGACCCGCCCTACTCGACGGTGCAGACCGGACTGATCCAGGGC 
GGCCGGGCGCTGAACATCGTGCCCGCCGAGTGCCGCTTCGACTTCGAGGTCCGCGCGCTGCCGGCGGACGAC 
CCGCGGCAGGTCGCCGAGGAACTCCGTGACTATGCCGAAAGCGAACTGCTGCCGCGGATGCGTGCGGTAGAG 
CGAAGTACCGATATCCGCTTCACGCCGCTATCGGCCTATCCCGGCCTGCTCACCGCAGACGACAGCCAGGCG 
GCGGAGCTGATCGGCCTGCTCAGCGGTTCGACGGATTTCTCCACCGTGGCCTTCGGCACCGAGGGCGGGCTG 
TTCCACCAGGCCGGTATCCCGGCGGTGATCTGCGGTCCCGGCAGCATGGACCAGGGCCACAAGCCGGACGAG 
TTCGTCAGCCTCGCTCAGCTCGAGGCGTGCGACGCCCTGCTGGCGCGCCTGGCGGCGTGGCTGCGGGAGCCT 
TGA