ViewGene
Locus Name:
GeneID:
Location:

GeneID:159
TrivialName: PA14_27730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27730
PAO1 Ortholog Locus:PA2815
Sequence Length:2448
Protein Length:815
Start: 2406152
Stop: 2403705
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06203.1|AE004708_9 (AE004708) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 815/815 (100%), Positives = 815/815 (100%)
Sequence:
ATGTTGTTGCTCTGGTTAGTCGTACTGGTACTCGGTGTCGCTTACCTCGCCCATCGGCGTACCCCACCCGCT
CCCGCGCTCGGCATCAGCGCCGCCTACCTGATCCTGATGGGCGTGTTCAGCCACGCGCCCGGCTGGCTGCTG
CTGGTCTTCTGGCTGCTCTGGCTGGCGGTGGCGCTTCCCCTCGCCCTGCCCGACCTGCGCCGGCGCGTGCTC
AGCGGTCCGCTGTTCGCCTGGTTCCAGAAAGTCCTGCCGCCGATGTCCGACACCGAGCGCGAGGCCATCGAG
GCGGGCACCGTGTGGTGGGATGGCGAATTGTTCAGCGGCCGCCCGGACTGGCAGAAACTGCTCGACTACCCC
AAGGCGCAACTCACCGAAGAAGAGCAGGCCTTCGTCGACGGCCCGACCGAAGAACTCTGCGCCATGGTCAGC
GACTGGGACATCGGCCAGCGCATGGACCTGCCGGAAGAAGCCTGGGCCTTCATCAAGCAGCACGGCTTCTTC
GGCCTGATCATTCCCAAGGAGTACGGCGGCAAGGGCTTCTCCGCCTTCGCCCACTCACAGGTGGTGATGAAG
CTCGCCACCCGCAGCGGCGACCTGGCCTCGACGGTGATGGTGCCGAACTCCCTCGGCCCGGCCGAGCTGCTG
CTCCACTACGGCACCGACGAGCAGCGCCAGCGCTACCTGCCGAGCCTGGCCAAGGGCGACGACATCCCCTGC
TTCGCCCTCACCGGCCCCTACGCGGGCTCCGATGCCGGCGGCATGACCGACGTCGGCATCGTCTGCAAGGGC
GAATGGGAAGGTCGCGAGGTACTCGGCCTGCGCCTGACCTGGGAAAAGCGCTACATCACCCTCGGCCCGGTG
GCCACCCTCCTCGGCCTGGCCTTCAAGTGCCACGACCCGGACCATTTGCTGGGCGACGAGGAGGACCTGGGC
ATCACCCTGGCGCTGATTCCCACCGACACCCCCGGGGTCGAGATCGGCCGCCGCCACGTGCCGCTGGGCGCC
GCCTTCATGAACGGTCCGAACTCCGGCAAGGACGTGTTCGTGCCGCTGGAGTACATCATCGGCGGGCAGGAA
ATGATCGGCAAAGGCTGGATGATGCTGATGAACTGCCTGTCGGTCGGACGCTCCATCTCGCTGCCGGCGGTG
GGCACCAGCGCCGGCAAGGCCAGCAGCTACGTCAGCGGTCGCTACGCCCAGGTCCGCGAGCAGTTCAACGTG
CCGATCGCCGCCTTCGAAGGCATCCAGGAGGCGCTCGCCCGCATCGGCGGCAACGCCTGGCTGATGGACAGC
GCGCGAATCCTCACCGCCAACGCGGTGGACCTCGGCGAGAAGCCCTCGGTGCTTTCGGCGATCCTCAAGTAC
CACCTCACCGAGCGCGGCCGCGAGTGCATCGCCCATGCCATGGACATCCATGGCGGCAAGGGCATCATCATG
GGCCCGAACAACTACCTGGGTCGTTCCTGGCAGGGCGCGCCGATCTTCATCACGGTGGAAGGCGCGAACATC
CTCTCGCGCAACCTGATGATCTTCGGCCAGGGCGCGATCCGTTGCCATCCGTACGTACTCAAGGAAATGGAA
CTGGCCCAGCGCGAGGACAAGGACCAGGCCGCCCGCGAGTTCGACGCGCTGCTGGTGAAGCACATCGGCTTC
GCCGTCGGCAACGCCGCCAGCAGCTTCCTCCTCAGTCTCAGCTGCGGCCACCTCGGCAACGCGCCCGGCGAC
CGCATCAGCCGTCCCTACTTCCGCGCGCTGAACCGCCTGGCGGCGTCCTTCGCCCTGCTCGCCGACTTCAGC
ATGATGCTGCTGGGCGGCGAACTGAAGCGCAAGGAACGCCTCTCCGCGCGTCTCGGCGATGTCCTCAGTTAT
CTCTACCTGGGCTCGGCGGCGCTCAAGCGCTACCACGACCTGGGCAACCCGGACTACCTGCATCCGCTGCTG
CGCTGGGCCATGGAGGAAAACCTCGGCAAGGCCGAGGCGGCGCTGGAGGACCTGCTGAACAACTTCCCCAGC
CGCTTCTTCGGCTGCGCGCTGAAGGTCCTGGTACTGCCGTTCGGCCGCCGGCACAAAGGGCCGGGCGACGAA
CTGGACGCCGAGATCGCGGAAATCCTCGGCCGTCCGGACGACGACCCGGCGTTGCAGGCGATCCTCGCTGGC
GCGTTCCTGCCGAAGGACCCGCAGGACCCGGTCGGTGCCCTCGCCCACGCCTTCGACGCGGTACGCGAAAGC
GCCGCGCTGGAGAAAACCCTGCACAAGGCGATCAAGGAAGGCAGGGTCCAGCCGCAAGCGGGGCAGAACCCG
ATCGATGCCGGCGCCGCCGCCGGCGTGCTGAGCGCCGAGCAGGCGCAGGCCCTGCACCAGGCCGAAGCGGCA
CGGCGCAAGGTGATCGACGTCGACGACTTCGCCAAGGAGGAACTGCAACTGGCCGACGGCAGGATCCGCTGA
Translation:
MLLLWLVVLVLGVAYLAHRRTPPAPALGISAAYLILMGVFSHAPGWLLLVFWLLWLAVALPLALPDLRRRVL
SGPLFAWFQKVLPPMSDTEREAIEAGTVWWDGELFSGRPDWQKLLDYPKAQLTEEEQAFVDGPTEELCAMVS
DWDIGQRMDLPEEAWAFIKQHGFFGLIIPKEYGGKGFSAFAHSQVVMKLATRSGDLASTVMVPNSLGPAELL
LHYGTDEQRQRYLPSLAKGDDIPCFALTGPYAGSDAGGMTDVGIVCKGEWEGREVLGLRLTWEKRYITLGPV
ATLLGLAFKCHDPDHLLGDEEDLGITLALIPTDTPGVEIGRRHVPLGAAFMNGPNSGKDVFVPLEYIIGGQE
MIGKGWMMLMNCLSVGRSISLPAVGTSAGKASSYVSGRYAQVREQFNVPIAAFEGIQEALARIGGNAWLMDS
ARILTANAVDLGEKPSVLSAILKYHLTERGRECIAHAMDIHGGKGIIMGPNNYLGRSWQGAPIFITVEGANI
LSRNLMIFGQGAIRCHPYVLKEMELAQREDKDQAAREFDALLVKHIGFAVGNAASSFLLSLSCGHLGNAPGD
RISRPYFRALNRLAASFALLADFSMMLLGGELKRKERLSARLGDVLSYLYLGSAALKRYHDLGNPDYLHPLL
RWAMEENLGKAEAALEDLLNNFPSRFFGCALKVLVLPFGRRHKGPGDELDAEIAEILGRPDDDPALQAILAG
AFLPKDPQDPVGALAHAFDAVRESAALEKTLHKAIKEGRVQPQAGQNPIDAGAAAGVLSAEQAQALHQAEAA
RRKVIDVDDFAKEELQLADGRIR*
AnnotationID:169GeneID:159
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 10:10:38
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:yafH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00567,cd01158,COG1960
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57324.1| (AE016869) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 815

 Score = 1306 bits (3379), Expect = 0.0
 Identities = 626/815 (76%), Positives = 714/815 (87%)

>gb|AAN67512.1|AE016379_7 (AE016781) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 815

 Score = 1262 bits (3266), Expect = 0.0
 Identities = 613/816 (75%), Positives = 698/816 (85%), Gaps = 2/816 (0%)

>gb|AAN55566.1|AE015695_8 (AE015695) oxidoreductase, acyl-CoA dehydrogenase family
           [Shewanella oneidensis MR-1]
          Length = 815

 Score =  817 bits (2110), Expect = 0.0
 Identities = 425/813 (52%), Positives = 552/813 (67%), Gaps = 21/813 (2%)








 
Structural Features:
cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  99.5% aligned
Score =  180 bits (459), Expect = 5e-46

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  86.1% aligned
Score =  158 bits (402), Expect = 2e-39

COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
CD-Length = 393 residues,  96.2% aligned
Score =  189 bits (481), Expect = 1e-48
Identities = 117/396 (29%), Positives = 175/396 (44%), Gaps = 27/396 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:321




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17463




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36236




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:159_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:159
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
286
                           PA2815_tr
                           translation of PA2815
                           815
                           99.99
                           99.99
                           0
                           4245.0
     

     
     
18364
                           gb|AAG06203.1|AE004708_9
                           (AE004708) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           815
                           99.99
                           99.99
                           0
                           4245.0
     

     
     
18365
                           gb|AAO57324.1|
                           (AE016869) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           815
                           76.80
                           87.60
                           0
                           3379.0
     

     
     
18366
                           gb|AAN67512.1|AE016379_7
                           (AE016781) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           816
                           75.12
                           85.53
                           2
                           3270.0
     

     
     
18367
                           gb|AAN55566.1|AE015695_8
                           (AE015695) oxidoreductase, acyl-CoA dehydrogenase family [Shewanella oneidensis MR-1]
                           841
                           50.77
                           65.75
                           52
                           2126.0
     

     






      

          
GC ORFID: 43161How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2815Glimmer Score: 

          
Start: 2547775Stop: 2550222

          
Length: 2448


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2815 translation of PA2815Homolog Bit Score 1639.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2657 (ORF: BLASTX 1310.0), t_PA2815 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGTTGCTCTGGTTAGTCGTACTGGTACTCGGTGTCGCTTACCTCGCCCATCGGCGTACCCCACCCGCT 
CCCGCGCTCGGCATCAGCGCCGCCTACCTGATCCTGATGGGCGTGTTCAGCCACGCGCCCGGCTGGCTGCTG 
CTGGTCTTCTGGCTGCTCTGGCTGGCGGTGGCGCTTCCCCTCGCCCTGCCCGACCTGCGCCGGCGCGTGCTC 
AGCGGTCCGCTGTTCGCCTGGTTCCAGAAAGTCCTGCCGCCGATGTCCGACACCGAGCGCGAGGCCATCGAG 
GCGGGCACCGTGTGGTGGGATGGCGAATTGTTCAGCGGCCGCCCGGACTGGCAGAAACTGCTCGACTACCCC 
AAGGCGCAACTCACCGAAGAAGAGCAGGCCTTCGTCGACGGCCCGACCGAAGAACTCTGCGCCATGGTCAGC 
GACTGGGACATCGGCCAGCGCATGGACCTGCCGGAAGAAGCCTGGGCCTTCATCAAGCAGCACGGCTTCTTC 
GGCCTGATCATTCCCAAGGAGTACGGCGGCAAGGGCTTCTCCGCCTTCGCCCACTCACAGGTGGTGATGAAG 
CTCGCCACCCGCAGCGGCGACCTGGCCTCGACGGTGATGGTGCCGAACTCCCTCGGCCCGGCCGAGCTGCTG 
CTCCACTACGGCACCGACGAGCAGCGCCAGCGCTACCTGCCGAGCCTGGCCAAGGGCGACGACATCCCCTGC 
TTCGCCCTCACCGGCCCCTACGCGGGCTCCGATGCCGGCGGCATGACCGACGTCGGCATCGTCTGCAAGGGC 
GAATGGGAAGGTCGCGAGGTACTCGGCCTGCGCCTGACCTGGGAAAAGCGCTACATCACCCTCGGCCCGGTG 
GCCACCCTCCTCGGCCTGGCCTTCAAGTGCCACGACCCGGACCATTTGCTGGGCGACGAGGAGGACCTGGGC 
ATCACCCTGGCGCTGATTCCCACCGACACCCCCGGGGTCGAGATCGGCCGCCGCCACGTGCCGCTGGGCGCC 
GCCTTCATGAACGGTCCGAACTCCGGCAAGGACGTGTTCGTGCCGCTGGAGTACATCATCGGCGGGCAGGAA 
ATGATCGGCAAAGGCTGGATGATGCTGATGAACTGCCTGTCGGTCGGACGCTCCATCTCGCTGCCGGCGGTG 
GGCACCAGCGCCGGCAAGGCCAGCAGCTACGTCAGCGGTCGCTACGCCCAGGTCCGCGAGCAGTTCAACGTG 
CCGATCGCCGCCTTCGAAGGCATCCAGGAGGCGCTCGCCCGCATCGGCGGCAACGCCTGGCTGATGGACAGC 
GCGCGAATCCTCACCGCCAACGCGGTGGACCTCGGCGAGAAGCCCTCGGTGCTTTCGGCGATCCTCAAGTAC 
CACCTCACCGAGCGCGGCCGCGAGTGCATCGCCCATGCCATGGACATCCATGGCGGCAAGGGCATCATCATG 
GGCCCGAACAACTACCTGGGTCGTTCCTGGCAGGGCGCGCCGATCTTCATCACGGTGGAAGGCGCGAACATC 
CTCTCGCGCAACCTGATGATCTTCGGCCAGGGCGCGATCCGTTGCCATCCGTACGTACTCAAGGAAATGGAA 
CTGGCCCAGCGCGAGGACAAGGACCAGGCCGCCCGCGAGTTCGACGCGCTGCTGGTGAAGCACATCGGCTTC 
GCCGTCGGCAACGCCGCCAGCAGCTTCCTCCTCAGTCTCAGCTGCGGCCACCTCGGCAACGCGCCCGGCGAC 
CGCATCAGCCGTCCCTACTTCCGCGCGCTGAACCGCCTGGCGGCGTCCTTCGCCCTGCTCGCCGACTTCAGC 
ATGATGCTGCTGGGCGGCGAACTGAAGCGCAAGGAACGCCTCTCCGCGCGTCTCGGCGATGTCCTCAGTTAT 
CTCTACCTGGGCTCGGCGGCGCTCAAGCGCTACCACGACCTGGGCAACCCGGACTACCTGCATCCGCTGCTG 
CGCTGGGCCATGGAGGAAAACCTCGGCAAGGCCGAGGCGGCGCTGGAGGACCTGCTGAACAACTTCCCCAGC 
CGCTTCTTCGGCTGCGCGCTGAAGGTCCTGGTACTGCCGTTCGGCCGCCGGCACAAAGGGCCGGGCGACGAA 
CTGGACGCCGAGATCGCGGAAATCCTCGGCCGTCCGGACGACGACCCGGCGTTGCAGGCGATCCTCGCTGGC 
GCGTTCCTGCCGAAGGACCCGCAGGACCCGGTCGGTGCCCTCGCCCACGCCTTCGACGCGGTACGCGAAAGC 
GCCGCGCTGGAGAAAACCCTGCACAAGGCGATCAAGGAAGGCAGGGTCCAGCCGCAAGCGGGGCAGAACCCG 
ATCGATGCCGGCGCCGCCGCCGGCGTGCTGAGCGCCGAGCAGGCGCAGGCCCTGCACCAGGCCGAAGCGGCA 
CGGCGCAAGGTGATCGACGTCGACGACTTCGCCAAGGAGGAACTGCAACTGGCCGACGGCAGGATCCGCTGA