ViewGene
Locus Name:
GeneID:
Location:

GeneID:1589
TrivialName: PA14_09550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09550
PAO1 Ortholog Locus:PA4204
Sequence Length:1167
Protein Length:388
Start: 822791
Stop: 821625
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07591.1|AE004837_2 (AE004837) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 387/388 (99%), Positives = 387/388 (99%)
Sequence:
ATGAGAAGACTGCCCACCCTCTGCCTGCTGGCCCTCGCGCCGCTCACCGGCGTGGCGCCCCAGGCCCAGGCC
GCCAGCCTCTACAACCTGCTGGTGGGGACCTATACCGAAGGCTCCAGCGAGGGCATCCAGGTCTACCGCTTC
GACGGCGCCGACGGCTCGGTGAAAGGCCCGCTGCGCGTGGCCCATACCAGCAACCCCTCGTACCTGACCTTC
GCCCCGGACCAACGCACTCTGTTCGTGGTCAACGAGAACGGACGGGGCGGCAAGGGCGATACCGTCGGTCGC
GCCACGTCCTACCGTTTCGATCCGATCAGCGGCCGCCTGCAACAGATCAGCCAGGTCCAGACCCTCGGCGAT
CATCCGACCTACAGCAGCCTCAGCCACGACGGTCGCTACCTGTTCGTCGCCAACTACTCGGTACAGCCGGAA
GGTTCGGTGGCGGTACTGCCGGTGCGCGCGGACGGCTCGCTGGCGCCGGTGGTGCAGGTGGAGTCGCACCAG
GCCAGCAAGGTGCATCCGCGCCAGGTTTCCGGTCATGTGCACTCGGTGGTGTCCTCGCCCGACGGCCAGTAC
CTGTTCGCCCCCGACCTCGGCGCCGACAAGGTATTCGTCTACCGCTACGCCCCGGAACAGGCCGAACGTCCA
CTGCAGGCGGCCGATCCGGCATTCGTCCCGACCCCGCCCGGCAGCGGCCCGCGCCATCTGATCTTCAGCGCC
GACGGGCGTTTCGCCTACCTGACCCTGGAACTGAGCGGCCAGGTGATGGTGTTCGCCCATGAGGGCAATGGC
CGCCTGCGTCAGTTGCAGACCCACGACCTGGCGCCTGCCGGCTTCCAGGGCAAAGTCGGCGCCGGCGCCCTG
CACCTGTCCGCCGACGGCCGCTTCCTCGGCGTGCTCAATCGCGGCGACGACAACCAACTGGTGACCTTCGCC
GTCGACCCGGCCAGCGGCCAGTTGCGTTTCGTCGAACGGCGCTCGGTGGAAGGCACCGAGCCGCGCGAATTC
GCCTTCTCGCCCGGCGGGCGCTTCGTCCTCGTGGCCAACCAGAATAGCGACCAGTTGCGGGTGTTCGCCCGC
GATCCGCAGAGCGGCCAGGTGGGCAAGACGCTGCAAAGCGTCGAGGTGGGGTCGCCGAGCGATCTGCGCTTC
GTGGCGGTGCCGTGA
Translation:
MRRLPTLCLLALAPLTGVAPQAQAASLYNLLVGTYTEGSSEGIQVYRFDGADGSVKGPLRVAHTSNPSYLTF
APDQRTLFVVNENGRGGKGDTVGRATSYRFDPISGRLQQISQVQTLGDHPTYSSLSHDGRYLFVANYSVQPE
GSVAVLPVRADGSLAPVVQVESHQASKVHPRQVSGHVHSVVSSPDGQYLFAPDLGADKVFVYRYAPEQAERP
LQAADPAFVPTPPGSGPRHLIFSADGRFAYLTLELSGQVMVFAHEGNGRLRQLQTHDLAPAGFQGKVGAGAL
HLSADGRFLGVLNRGDDNQLVTFAVDPASGQLRFVERRSVEGTEPREFAFSPGGRFVLVANQNSDQLRVFAR
DPQSGQVGKTLQSVEVGSPSDLRFVAVP*
AnnotationID:1598GeneID:1589
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 05:05:36
Gene Name:
Confidence Code:3
GeneProduct:putative 3-carboxymuconate cyclase
Cell Localization:()
Synonyms:PA4204
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2706
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
CD-Length = 346 residues, 100.0% aligned
Score =  395 bits (1016), Expect = 5e-111
Identities = 155/362 (42%), Positives = 207/362 (57%), Gaps = 17/362 (4%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20328




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36697




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1589_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1589
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2814
                           PA4204_tr
                           translation of PA4204
                           388
                           99.74
                           99.74
                           0
                           1990.0
     

     
     
88012
                           gb|AAG07591.1|AE004837_2
                           (AE004837) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           388
                           99.74
                           99.74
                           0
                           1990.0
     

     
     
88013
                           gb|AAO57237.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           398
                           49.49
                           66.08
                           18
                           906.0
     

     
     
88014
                           gb|AAN67635.1|AE016393_4
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           392
                           48.97
                           64.54
                           20
                           880.0
     

     






      

          
GC ORFID: 44591How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4204Glimmer Score: 

          
Start: 4131146Stop: 4132312

          
Length: 1167


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4204 translation of PA4204Homolog Bit Score 771.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene743 (ORF: BLASTX 352.0), t_PA4204 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAAGACTGCCCACCCTCTGCCTGCTGGCCCTCGCGCCGCTCACCGGCGTGGCGCCCCAGGCCCAGGCC 
GCCAGCCTCTACAACCTGCTGGTGGGGACCTATACCGAAGGCTCCAGCGAGGGCATCCAGGTCTACCGCTTC 
GACGGCGCCGACGGCTCGGTGAAAGGCCCGCTGCGCGTGGCCCATACCAGCAACCCCTCGTACCTGACCTTC 
GCCCCGGACCAACGCACTCTGTTCGTGGTCAACGAGAACGGACGGGGCGGCAAGGGCGATACCGTCGGTCGC 
GCCACGTCCTACCGTTTCGATCCGATCAGCGGCCGCCTGCAACAGATCAGCCAGGTCCAGACCCTCGGCGAT 
CATCCGACCTACAGCAGCCTCAGCCACGACGGTCGCTACCTGTTCGTCGCCAACTACTCGGTACAGCCGGAA 
GGTTCGGTGGCGGTACTGCCGGTGCGCGCGGACGGCTCGCTGGCGCCGGTGGTGCAGGTGGAGTCGCACCAG 
GCCAGCAAGGTGCATCCGCGCCAGGTTTCCGGTCATGTGCACTCGGTGGTGTCCTCGCCCGACGGCCAGTAC 
CTGTTCGCCCCCGACCTCGGCGCCGACAAGGTATTCGTCTACCGCTACGCCCCGGAACAGGCCGAACGTCCA 
CTGCAGGCGGCCGATCCGGCATTCGTCCCGACCCCGCCCGGCAGCGGCCCGCGCCATCTGATCTTCAGCGCC 
GACGGGCGTTTCGCCTACCTGACCCTGGAACTGAGCGGCCAGGTGATGGTGTTCGCCCATGAGGGCAATGGC 
CGCCTGCGTCAGTTGCAGACCCACGACCTGGCGCCTGCCGGCTTCCAGGGCAAAGTCGGCGCCGGCGCCCTG 
CACCTGTCCGCCGACGGCCGCTTCCTCGGCGTGCTCAATCGCGGCGACGACAACCAACTGGTGACCTTCGCC 
GTCGACCCGGCCAGCGGCCAGTTGCGTTTCGTCGAACGGCGCTCGGTGGAAGGCACCGAGCCGCGCGAATTC 
GCCTTCTCGCCCGGCGGGCGCTTCGTCCTCGTGGCCAACCAGAATAGCGACCAGTTGCGGGTGTTCGCCCGC 
GATCCGCAGAGCGGCCAGGTGGGCAAGACGCTGCAAAGCGTCGAGGTGGGGTCGCCGAGCGATCTGCGCTTC 
GTGGCGGTGCCGTGA