ViewGene
Locus Name:
GeneID:
Location:

GeneID:1588
TrivialName: PA14_35230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35230
PAO1 Ortholog Locus:PA2269
Sequence Length:1206
Protein Length:401
Start: 3132610
Stop: 3133815
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05657.1|AE004652_10 (AE004652) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/401 (99%), Positives = 399/401 (99%)
Sequence:
ATGAGCAACCCCTATCTCGAACTGTTCGCCGCGCCCGGCGCCAAGGGCTTTTCAGCCGCCGGCCTGCTGGCG
CGGATGCCCCTGTCGATGACCGGCCTGGGCATCGTCACCATGCTTTCCCAGGTGCATGCCGACTACTGGCTG
GCCGGTACCGTGGCGGCCACCTTCGTGTTCTGCAATGCCTTGCTCGCGCCGCAGGTATCGCGCCTGGTGGAC
CGCTTCGGCCAGGGCCGGGTGCTGCTCCCGGCCGCTCTGGCCAGCGCCCTGGCGATGAGCGCGCTGTTGCTG
TGTACGCACTATCGAGCGCCGAATGCCTGGCTCTACCTGTTCGCCTTGCTCGCCGGGGCGATGCCGAGCATG
CCGGCCATGGTGCGGGCGCGCTGGACCGAGCTGTACCGGGGCTCGCCGAAGCTGCACACGGCGTTTTCCTTC
GAATCGGTGATGGACGAGGTGTGCTACATCATCGGGCCGGTGCTGGCGGTGAGCCTCAGCGTCGGCTGGTTC
GCCGAGGCGGGGCCGCTGCTGGCGACGCTGTTCCTGGTCGCCGGGGTGAGCCTGTTCAGCCTGCAACGCGGC
ACCGAACCGCCGCTGCATGCCCATCCGCGGCGCCGCGCCGGCAGCGCGCTGGCCTATCCGGCGGTACGCGTG
CTGGCGCTGGTGCTGGCCGCCATCGGGGTGATCTTCGGCGCGGTGGAAGTGGTCAGCGTGGCCTTCGCCGAG
GCGCACGGCAACAAGGCTGCGGCAAGCCTGGTGTTGTCGGTCTATGCCGTCGGCTCATGTCTCGCGGGATTG
CTGTTCGGGCTGCTGCGCTGGCGCCTGGCGCTTTCCCGGCAATTGCTCAGCATGGTTACGCTGATGGCCCTG
AGCCTGATGCCGCTGCTAGGGGTGGAGAGCATCCTTGCGCTTGCCCTGACCGTGCTGGTGGCCGGTTTCAGC
GTGGCGCCGACGATGATCCTGGCCATGGGCCTGGTCGAGCGCGCGGTGGACCCGGCACGCCTCACCGAAGGC
CTGACCTGGGCCATCACCGGGCTGGGCATCGGCATGGCCCTGGGCTCGGCGCTGGCCGGTTGGGTGGTGGAG
GGCTACGGCGCCGCCAGCGGTTTCCTCGTCGCGGTCGGCGCCGGCTGGCTGGCCTGGCTGCTGGCCCTGGCC
TGCTTCCGGGTGCTGGCTCAGGACGAGGCCGGAGACTGCGCGGTGTCCGGCTGA
Translation:
MSNPYLELFAAPGAKGFSAAGLLARMPLSMTGLGIVTMLSQVHADYWLAGTVAATFVFCNALLAPQVSRLVD
RFGQGRVLLPAALASALAMSALLLCTHYRAPNAWLYLFALLAGAMPSMPAMVRARWTELYRGSPKLHTAFSF
ESVMDEVCYIIGPVLAVSLSVGWFAEAGPLLATLFLVAGVSLFSLQRGTEPPLHAHPRRRAGSALAYPAVRV
LALVLAAIGVIFGAVEVVSVAFAEAHGNKAAASLVLSVYAVGSCLAGLLFGLLRWRLALSRQLLSMVTLMAL
SLMPLLGVESILALALTVLVAGFSVAPTMILAMGLVERAVDPARLTEGLTWAITGLGIGMALGSALAGWVVE
GYGAASGFLVAVGAGWLAWLLALACFRVLAQDEAGDCAVSG*
AnnotationID:1597GeneID:1588
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 08:08:09
Gene Name:
Confidence Code:3
GeneProduct:putative efflux protein
Cell Localization:()
Synonyms:PA2269
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC transporter, permease protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC70119.1| (AP005030) putative membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 412

 Score =  395 bits (1014), Expect = e-109
 Identities = 203/391 (51%), Positives = 275/391 (70%)

>emb|CAC48724.1| (AL603643) putative efflux protein [Sinorhizobium meliloti]
          Length = 407

 Score =  371 bits (952), Expect = e-102
 Identities = 197/378 (52%), Positives = 260/378 (68%), Gaps = 5/378 (1%)

>dbj|BAB53562.1| (AP003011) ABC transporter, permease protein [Mesorhizobium loti]
          Length = 407

 Score =  369 bits (948), Expect = e-101
 Identities = 196/390 (50%), Positives = 255/390 (65%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20326




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1588
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2813
                           PA2269_tr
                           translation of PA2269
                           401
                           99.25
                           99.50
                           0
                           1991.0
     

     
     
88000
                           gb|AAG05657.1|AE004652_10
                           (AE004652) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           401
                           99.25
                           99.50
                           0
                           1991.0
     

     
     
88007
                           gb|AAN69555.1|AE016589_4
                           (AE016788) transporter, putative [Pseudomonas putida KT2440]
                           403
                           50.86
                           68.23
                           3
                           930.0
     

     
     
88002
                           emb|CAC48724.1|
                           (AL603643) putative efflux protein [Sinorhizobium meliloti]
                           414
                           49.27
                           65.70
                           20
                           953.0
     

     
     
88001
                           dbj|BAC70119.1|
                           (AP005030) putative membrane prootein [Streptomyces avermitilis MA-4680]
                           417
                           49.16
                           66.66
                           21
                           1003.0
     

     






      

          
GC ORFID: 44590How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2269Glimmer Score: 

          
Start: 1821306Stop: 1820101

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2269 translation of PA2269Homolog Bit Score 771.0

          
Other Homologs:  t_PA2269 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAACCCCTATCTCGAACTGTTCGCCGCGCCCGGCGCCAAGGGCTTTTCAGCCGCCGGCCTGCTGGCG 
CGGATGCCCCTGTCGATGACCGGCCTGGGCATCGTCACCATGCTTTCCCAGGTGCATGCCGACTACTGGCTG 
GCCGGTACCGTGGCGGCCACCTTCGTGTTCTGCAATGCCTTGCTCGCGCCGCAGGTATCGCGCCTGGTGGAC 
CGCTTCGGCCAGGGCCGGGTGCTGCTCCCGGCCGCTCTGGCCAGCGCCCTGGCGATGAGCGCGCTGTTGCTG 
TGTACGCACTATCGAGCGCCGAATGCCTGGCTCTACCTGTTCGCCTTGCTCGCCGGGGCGATGCCGAGCATG 
CCGGCCATGGTGCGGGCGCGCTGGACCGAGCTGTACCGGGGCTCGCCGAAGCTGCACACGGCGTTTTCCTTC 
GAATCGGTGATGGACGAGGTGTGCTACATCATCGGGCCGGTGCTGGCGGTGAGCCTCAGCGTCGGCTGGTTC 
GCCGAGGCGGGGCCGCTGCTGGCGACGCTGTTCCTGGTCGCCGGGGTGAGCCTGTTCAGCCTGCAACGCGGC 
ACCGAACCGCCGCTGCATGCCCATCCGCGGCGCCGCGCCGGCAGCGCGCTGGCCTATCCGGCGGTACGCGTG 
CTGGCGCTGGTGCTGGCCGCCATCGGGGTGATCTTCGGCGCGGTGGAAGTGGTCAGCGTGGCCTTCGCCGAG 
GCGCACGGCAACAAGGCTGCGGCAAGCCTGGTGTTGTCGGTCTATGCCGTCGGCTCATGTCTCGCGGGATTG 
CTGTTCGGGCTGCTGCGCTGGCGCCTGGCGCTTTCCCGGCAATTGCTCAGCATGGTTACGCTGATGGCCCTG 
AGCCTGATGCCGCTGCTAGGGGTGGAGAGCATCCTTGCGCTTGCCCTGACCGTGCTGGTGGCCGGTTTCAGC 
GTGGCGCCGACGATGATCCTGGCCATGGGCCTGGTCGAGCGCGCGGTGGACCCGGCACGCCTCACCGAAGGC 
CTGACCTGGGCCATCACCGGGCTGGGCATCGGCATGGCCCTGGGCTCGGCGCTGGCCGGTTGGGTGGTGGAG 
GGCTACGGCGCCGCCAGCGGTTTCCTCGTCGCGGTCGGCGCCGGCTGGCTGGCCTGGCTGCTGGCCCTGGCC 
TGCTTCCGGGTGCTGGCTCAGGACGAGGCCGGAGACTGCGCGGTGTCCGGCTGA