ViewGene
Locus Name:
GeneID:
Location:

GeneID:1587
TrivialName: PA14_64610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64610
PAO1 Ortholog Locus:PA4888
Sequence Length:1113
Protein Length:370
Start: 5756506
Stop: 5755394
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08273.1|AE004902_1 (AE004902) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 368/369 (99%), Positives = 368/369 (99%)
Sequence:
GTGAACCGACCTGCGAGCCCTGCGATGCGCGACGACCGCGAACTGACCCCGGAACAACTGGCGGCCTTCGGC
GCCGAACTCGACGCCCTGCGCCAGCGTACCCTGGCCGATCTCGGCGCGGACGACGCGCGCTACATCCGCCGG
GTCCGCGCGGCGGTGCGCGTCTGCTGCTGGAGCGGCAGGGCGCTGCTGATGTTCGGCTGGCTGCCGCCGACC
TGGCTGCTCGGCAGCCTGCTTCTCGGCCTGGGCAAGATCCTCGAGAACATGGAACTGGGCCACAACGTCATG
CACGGCCAGTACGACTGGATGAACGATCCGGAATTCGCCGGCCGCGCCTACGAGTGGGACATCGCCGGGCCG
TCCGACTTCTGGCGGCACACCCACAACCATATCCACCACACCTACACCAACGTGCTGGGCAAGGACGACGAC
GTCGGCTACGGGGTCGTGCGCCTGTTCCCGGAGCAGCGCTGGAAGCCGTTCTACCGCTGGCAACCGCTGTGG
GTGACGCTGCAGGCGCTGCTGTTCCAGTACGCGGTGGCGATCCAGCATCTGCGCCTGGACAAGTACGCCAAG
GGGCGCCTGGACAAGGCCGAACTCATGCCGCTGCTACGCCGCCTGCGTGCCAAGCTGGGTCGCCAGTGGACC
AAGGACTACCTGCTGTTCCCGCTTCTCGGCCTGTTCGCCGGAGGCTTTGGCGCGGTGTTCGTCGGCAACCTG
CTGGCCAACGTGCTGCGCAACCTGTGGACCTTCACGGTGATCTTCTGCGGCCACTTCACCGAGAAGGCGGTG
GTCTTCCCGCCCTCGGTGCTGGAGGGGGAGACCCGTGGCCACTGGTACCTGCGCCAGTTGCGCGGCTCCAGC
AACCTGGAGGGCGGGCCGCTGTTCCACATCCTGACCGGCAACCTCAGCCACCAGATCGAGCATCATCTCTAC
CCGGACCTGCCGGCGCGTCGCTACGCCGCGCTGTCCCGCGAGGTCCGCGAAATCGCCCGGCGCTACGGGCAG
ACCTACAACAGCGGACGCCTGGGACGGCAATTCCTCACTGTCTTGCGGCGCATCTGGGTATATCGGCTGCCG
CCGCGCGAGCCGCTCCCGGCGGGGCGCAGCTGA
Translation:
MNRPASPAMRDDRELTPEQLAAFGAELDALRQRTLADLGADDARYIRRVRAAVRVCCWSGRALLMFGWLPPT
WLLGSLLLGLGKILENMELGHNVMHGQYDWMNDPEFAGRAYEWDIAGPSDFWRHTHNHIHHTYTNVLGKDDD
VGYGVVRLFPEQRWKPFYRWQPLWVTLQALLFQYAVAIQHLRLDKYAKGRLDKAELMPLLRRLRAKLGRQWT
KDYLLFPLLGLFAGGFGAVFVGNLLANVLRNLWTFTVIFCGHFTEKAVVFPPSVLEGETRGHWYLRQLRGSS
NLEGGPLFHILTGNLSHQIEHHLYPDLPARRYAALSREVREIARRYGQTYNSGRLGRQFLTVLRRIWVYRLP
PREPLPAGRS*
AnnotationID:1596GeneID:1587
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:02
Gene Name:
Confidence Code:3
GeneProduct:putative fatty acid desaturase
Cell Localization:()
Synonyms:PA4888
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK47669.1| (AE007144) linoleoyl-CoA desaturase, putative [Mycobacterium
           tuberculosis CDC1551]
          Length = 427

 Score =  329 bits (844), Expect = 1e-89
 Identities = 164/350 (46%), Positives = 216/350 (61%), Gaps = 2/350 (0%)








 
Structural Features:
COG3239, DesA, Fatty acid desaturase [Lipid metabolism]
CD-Length = 343 residues,  95.6% aligned
Score =  187 bits (477), Expect = 1e-48
Identities = 93/364 (25%), Positives = 132/364 (36%), Gaps = 32/364 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20324




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35168




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1587_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1587
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2812
                           PA4888_tr
                           translation of PA4888
                           370
                           99.45
                           99.45
                           0
                           1994.0
     

     
     
87993
                           gb|AAG08273.1|AE004902_1
                           (AE004902) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           370
                           99.18
                           99.45
                           0
                           1991.0
     

     
     
87994
                           gb|AAM38796.1|
                           (AE012045) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           382
                           54.97
                           67.27
                           21
                           1072.0
     

     
     
87995
                           gb|AAM43492.1|
                           (AE012509) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           383
                           54.83
                           67.10
                           23
                           1070.0
     

     
     
87996
                           emb|CAE55572.1|
                           (BX842582) POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE) [Mycobacterium tuberculosis H37Rv]
                           433
                           39.03
                           51.50
                           69
                           840.0
     

     






      

          
GC ORFID: 44589How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4888Glimmer Score: 

          
Start: 5020187Stop: 5019075

          
Length: 1113


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4888 translation of PA4888Homolog Bit Score 772.0

          
Other Homologs:  t_PA4888 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCGACCTGCGAGCCCTGCGATGCGCGACGACCGCGAACTGACCCCGGAACAACTGGCGGCCTTCGGC 
GCCGAACTCGACGCCCTGCGCCAGCGTACCCTGGCCGATCTCGGCGCGGACGACGCGCGCTACATCCGCCGG 
GTCCGCGCGGCGGTGCGCGTCTGCTGCTGGAGCGGCAGGGCGCTGCTGATGTTCGGCTGGCTGCCGCCGACC 
TGGCTGCTCGGCAGCCTGCTTCTCGGCCTGGGCAAGATCCTCGAGAACATGGAACTGGGCCACAACGTCATG 
CACGGCCAGTACGACTGGATGAACGATCCGGAATTCGCCGGCCGCGCCTACGAGTGGGACATCGCCGGGCCG 
TCCGACTTCTGGCGGCACACCCACAACCATATCCACCACACCTACACCAACGTGCTGGGCAAGGACGACGAC 
GTCGGCTACGGGGTCGTGCGCCTGTTCCCGGAGCAGCGCTGGAAGCCGTTCTACCGCTGGCAACCGCTGTGG 
GTGACGCTGCAGGCGCTGCTGTTCCAGTACGCGGTGGCGATCCAGCATCTGCGCCTGGACAAGTACGCCAAG 
GGGCGCCTGGACAAGGCCGAACTCATGCCGCTGCTACGCCGCCTGCGTGCCAAGCTGGGTCGCCAGTGGACC 
AAGGACTACCTGCTGTTCCCGCTTCTCGGCCTGTTCGCCGGAGGCTTTGGCGCGGTGTTCGTCGGCAACCTG 
CTGGCCAACGTGCTGCGCAACCTGTGGACCTTCACGGTGATCTTCTGCGGCCACTTCACCGAGAAGGCGGTG 
GTCTTCCCGCCCTCGGTGCTGGAGGGGGAGACCCGTGGCCACTGGTACCTGCGCCAGTTGCGCGGCTCCAGC 
AACCTGGAGGGCGGGCCGCTGTTCCACATCCTGACCGGCAACCTCAGCCACCAGATCGAGCATCATCTCTAC 
CCGGACCTGCCGGCGCGTCGCTACGCCGCGCTGTCCCGCGAGGTCCGCGAAATCGCCCGGCGCTACGGGCAG 
ACCTACAACAGCGGACGCCTGGGACGGCAATTCCTCACTGTCTTGCGGCGCATCTGGGTATATCGGCTGCCG 
CCGCGCGAGCCGCTCCCGGCGGGGCGCAGCTGA