ViewGene
Locus Name:
GeneID:
Location:

GeneID:1586
TrivialName: PA14_22410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22410
PAO1 Ortholog Locus:PA3230
Sequence Length:1125
Protein Length:374
Start: 1950645
Stop: 1951769
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06618.1|AE004746_2 (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 373/374 (99%), Positives = 373/374 (99%)
Sequence:
ATGCCGATCCAGACGCTCGCCACCCTTGCCGATATCGACGCCGCCGAGTGGGACGCCTTGTTGCCTCCCGCC
CAGCCATTCCTGCGTCATGCTTTCCTGTCCGCGCTGGAAGACAGCCGCAGCGTGACGCCCGCCACCGGCTGG
CGCCCGGCCCATCGCGTGCTGCGCGATCCGCAAGGGCGGCTGTGCGCGGCGCTGCCGGCCTATGTGAAGGCG
CACTCGTACGGCGAGTACGTGTTCGACTGGAGCTGGGCCGACGCCTGCCAGCGGGCCGGTATCCGCTACTAC
CCGAAGCTGCTGGTGGGGGTGCCCTTCACCCCGGTCGCCGGTGCGCGCCTGCTGGGCGAGGACGAAGGGTTG
CAGGGGCTGCTCGCGTCCCTTGGCGAGGAGGCCGAGGCGAGCGGTCTGTCGAGCATCCATGTGAATTTCACC
GACGCCCGGGCGGACACCTTGCTTGCCGCGCGTGACGGTTGGCTAGAACGCCTGGGCTGCCAGTACCACTGG
CACAACCGCGGTTATCGGGACTTCCAGGACTTCCTCGAGGCCCTCAGTTCGCGCAAGCGCAAGCAACTGCGC
AAGGAGCGCGAACAGGTCGGCGGACAGGGCATCGAGTTCGAATGGCGGGAAGGCGGCCAGTTGTCCGAGCTG
GAGTGGGATTTCGTCTATCTCTGCTACGCCAACACCTACCTGGTGCGCGACCGCGATCCCTACCTGAGCCGC
GAGTTCTTCGGCCTGCTGGCCGAGCGCATGCCGGAGGCGATCCGCGTGGTCTTCGCCCACCAGCGCGGCAAG
CCGGTGGCGATGGCGTTCAGCCTGGTCGCTGGAGATACCCTGTACGGGCGCTACTGGGGATGCCTGGCCGAG
TTCGACCGGCTGCACTTCGAGACCTGCTTCTACCAGGGCCTGGAATTCGCCATCGGCGCCGGCCTGGCGCGC
TTCGACGCCGGCGCCCAGGGCGAACACAAGCTGATCCGCGGTTTCGAGCCGGTGCTGACGCGCTCCTGGCAC
TACCTGGCGCATCCCGGTCTGCGCGATGCCGTGGCGCAGTTCCTCGAACAGGAGCGGGCGGGAGTGCGCGCC
TACGCCGAGGAGGCCCACGGCCTGTTGCCCTACCGCCAGGCCTGA
Translation:
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSRSVTPATGWRPAHRVLRDPQGRLCAALPAYVKA
HSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFT
DARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSEL
EWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAE
FDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRA
YAEEAHGLLPYRQA*
AnnotationID:1595GeneID:1586
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3230
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20322




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32312




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1586_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1586
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2811
                           PA3230_tr
                           translation of PA3230
                           374
                           99.73
                           99.73
                           0
                           1994.0
     

     
     
87975
                           gb|AAG06618.1|AE004746_2
                           (AE004746) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           374
                           99.73
                           99.73
                           0
                           1994.0
     

     
     
87976
                           gb|AAO57548.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           376
                           68.88
                           81.11
                           3
                           1413.0
     

     
     
87977
                           gb|AAN70116.1|AE016651_6
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           406
                           63.30
                           71.67
                           35
                           1346.0
     

     
     
87981
                           emb|CAE42030.1|
                           (BX640416) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           380
                           46.05
                           58.15
                           10
                           828.0
     

     






      

          
GC ORFID: 44588How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3230Glimmer Score: 

          
Start: 3003286Stop: 3002162

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3230 translation of PA3230Homolog Bit Score 772.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6321 (ORF: BLASTX 543.0), t_PA3230 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGATCCAGACGCTCGCCACCCTTGCCGATATCGACGCCGCCGAGTGGGACGCCTTGTTGCCTCCCGCC 
CAGCCATTCCTGCGTCATGCTTTCCTGTCCGCGCTGGAAGACAGCCGCAGCGTGACGCCCGCCACCGGCTGG 
CGCCCGGCCCATCGCGTGCTGCGCGATCCGCAAGGGCGGCTGTGCGCGGCGCTGCCGGCCTATGTGAAGGCG 
CACTCGTACGGCGAGTACGTGTTCGACTGGAGCTGGGCCGACGCCTGCCAGCGGGCCGGTATCCGCTACTAC 
CCGAAGCTGCTGGTGGGGGTGCCCTTCACCCCGGTCGCCGGTGCGCGCCTGCTGGGCGAGGACGAAGGGTTG 
CAGGGGCTGCTCGCGTCCCTTGGCGAGGAGGCCGAGGCGAGCGGTCTGTCGAGCATCCATGTGAATTTCACC 
GACGCCCGGGCGGACACCTTGCTTGCCGCGCGTGACGGTTGGCTAGAACGCCTGGGCTGCCAGTACCACTGG 
CACAACCGCGGTTATCGGGACTTCCAGGACTTCCTCGAGGCCCTCAGTTCGCGCAAGCGCAAGCAACTGCGC 
AAGGAGCGCGAACAGGTCGGCGGACAGGGCATCGAGTTCGAATGGCGGGAAGGCGGCCAGTTGTCCGAGCTG 
GAGTGGGATTTCGTCTATCTCTGCTACGCCAACACCTACCTGGTGCGCGACCGCGATCCCTACCTGAGCCGC 
GAGTTCTTCGGCCTGCTGGCCGAGCGCATGCCGGAGGCGATCCGCGTGGTCTTCGCCCACCAGCGCGGCAAG 
CCGGTGGCGATGGCGTTCAGCCTGGTCGCTGGAGATACCCTGTACGGGCGCTACTGGGGATGCCTGGCCGAG 
TTCGACCGGCTGCACTTCGAGACCTGCTTCTACCAGGGCCTGGAATTCGCCATCGGCGCCGGCCTGGCGCGC 
TTCGACGCCGGCGCCCAGGGCGAACACAAGCTGATCCGCGGTTTCGAGCCGGTGCTGACGCGCTCCTGGCAC 
TACCTGGCGCATCCCGGTCTGCGCGATGCCGTGGCGCAGTTCCTCGAACAGGAGCGGGCGGGAGTGCGCGCC 
TACGCCGAGGAGGCCCACGGCCTGTTGCCCTACCGCCAGGCCTGA