ViewGene
Locus Name:
GeneID:
Location:

GeneID:1585
TrivialName: PA14_66000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66000
PAO1 Ortholog Locus:PA4991
Sequence Length:1176
Protein Length:391
Start: 5877893
Stop: 5879068
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08376.1|AE004912_2 (AE004912) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 389/391 (99%), Positives = 389/391 (99%)
Sequence:
ATGCCCCAAGCCCTTTCCACCGACATCCTCATCGTTGGCGGCGGTATCGCCGGCCTCTGGCTGAACGCCCGC
TTGCGCCGGGCCGGCTACGCCACCGTGCTGGTGGAAAGCGCCAGCCTCGGCGGCGGACAGAGCGTGAAGTCG
CAGGGGATCATCCACGGCGGCGCCAAGTACGCCCTGCATGGCGCCCTGACCGGCGCCTCCGAAGCCATCGCC
GACATGCCGCGGCGCTGGCGCGCCTGTCTCGGCAGCGACGGCGAACTCGACCTGCGGGGCGTACGCCTGCTT
TCCGAGGCGCACTACCTGTGGTCGCCGGGCGGCCTGGCCGGCAGCCTTACCAGCTTCTTCGCCAGCAAGGCG
GTGCGCAGCCGGGTCGAGCAGGCCAAGGGCGGGGATTTGCCTCCGGCGCTGCGCGACAAGGGGTTCAAGGGC
AAGGCCTACCGCCTCACGGAAATCGTCTTCGACGTCCCCGACCTGATTCGCCGCCTGGCGGAACTGGCCGGC
GACAGCCTGCTCGCCGGCGAGCGCATCGAACCGCTGCGCGAAGGCCGGGAACTGGCCGGCCTGTGCGTCGAC
GGCCGGGAGATCCGTGCACAGCGCGTGGTGCTCAGCGCCGGTGCCGGCAACGAGGCGCTGCTCCGCGAACTG
GGCCTGGAACAACCGGCCATGCAGCGGCGGCCGCTGCACATGGTGATGGTCAAGGCGGCGACCCTGAAACCG
CTGTACGCCCACTGCCTGGGGGCCGGGCCGAAGCCACGGATCACCGTGACCACCCATCCGACCCGCGACGGC
CAGTCGGTCTGGTACCTCGGCGGCGACATCGCCGAAGCCGATGGCGTGGCCCGCGACGAAGCCGCGCAGATC
GCCGAAGCACGCCGCGAACTGGCAAAGCTGCTGCCCTGGATCGACCTCGGCCAGGCGCAGTGGGCCACCTTG
CGGGTGGATCGCGCCGAGCCGGCACAGTCCAACCTGTTGCGCCCGGACAACGCCTTCCTCGCCGAACAGGGA
CGCCTGCTGGTCGGCTGGCCGACCAAGCTGGCGCTGGCCCCTGACTTCGCCGACCGGGTCTGCGCCCGCCTG
GAAGAAGACGGCATCCGCCCCAGCGAACATGCCGCGCTGCCGCAACTGCCGCGTCCGCCGCTCGCCGAACCG
GCCTGGGAGGTAGCCTTCGCATGA
Translation:
MPQALSTDILIVGGGIAGLWLNARLRRAGYATVLVESASLGGGQSVKSQGIIHGGAKYALHGALTGASEAIA
DMPRRWRACLGSDGELDLRGVRLLSEAHYLWSPGGLAGSLTSFFASKAVRSRVEQAKGGDLPPALRDKGFKG
KAYRLTEIVFDVPDLIRRLAELAGDSLLAGERIEPLREGRELAGLCVDGREIRAQRVVLSAGAGNEALLREL
GLEQPAMQRRPLHMVMVKAATLKPLYAHCLGAGPKPRITVTTHPTRDGQSVWYLGGDIAEADGVARDEAAQI
AEARRELAKLLPWIDLGQAQWATLRVDRAEPAQSNLLRPDNAFLAEQGRLLVGWPTKLALAPDFADRVCARL
EEDGIRPSEHAALPQLPRPPLAEPAWEVAFA*
AnnotationID:1594GeneID:1585
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 08:08:27
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4991
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):coenyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58408.1| (AE016874) oxidoreductase, FAD-binding [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 391

 Score =  587 bits (1514), Expect = e-167
 Identities = 291/387 (75%), Positives = 323/387 (83%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20320




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35059




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1585_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1585
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2810
                           PA4991_tr
                           translation of PA4991
                           391
                           99.48
                           99.48
                           0
                           1995.0
     

     
     
87972
                           gb|AAG08376.1|AE004912_2
                           (AE004912) hypothetical protein PA4991 [Pseudomonas aeruginosa PAO1]
                           391
                           99.48
                           99.48
                           0
                           1995.0
     

     
     
87973
                           gb|AAN70498.1|AE016691_6
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           391
                           75.19
                           82.60
                           0
                           1535.0
     

     
     
87974
                           gb|AAO58408.1|
                           (AE016874) oxidoreductase, FAD-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           391
                           74.42
                           82.60
                           0
                           1510.0
     

     






      

          
GC ORFID: 44587How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4991Glimmer Score: 

          
Start: 5141576Stop: 5142751

          
Length: 1176


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4991 translation of PA4991Homolog Bit Score 773.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3676 (ORF: BLASTX 595.0), t_PA4991 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCAAGCCCTTTCCACCGACATCCTCATCGTTGGCGGCGGTATCGCCGGCCTCTGGCTGAACGCCCGC 
TTGCGCCGGGCCGGCTACGCCACCGTGCTGGTGGAAAGCGCCAGCCTCGGCGGCGGACAGAGCGTGAAGTCG 
CAGGGGATCATCCACGGCGGCGCCAAGTACGCCCTGCATGGCGCCCTGACCGGCGCCTCCGAAGCCATCGCC 
GACATGCCGCGGCGCTGGCGCGCCTGTCTCGGCAGCGACGGCGAACTCGACCTGCGGGGCGTACGCCTGCTT 
TCCGAGGCGCACTACCTGTGGTCGCCGGGCGGCCTGGCCGGCAGCCTTACCAGCTTCTTCGCCAGCAAGGCG 
GTGCGCAGCCGGGTCGAGCAGGCCAAGGGCGGGGATTTGCCTCCGGCGCTGCGCGACAAGGGGTTCAAGGGC 
AAGGCCTACCGCCTCACGGAAATCGTCTTCGACGTCCCCGACCTGATTCGCCGCCTGGCGGAACTGGCCGGC 
GACAGCCTGCTCGCCGGCGAGCGCATCGAACCGCTGCGCGAAGGCCGGGAACTGGCCGGCCTGTGCGTCGAC 
GGCCGGGAGATCCGTGCACAGCGCGTGGTGCTCAGCGCCGGTGCCGGCAACGAGGCGCTGCTCCGCGAACTG 
GGCCTGGAACAACCGGCCATGCAGCGGCGGCCGCTGCACATGGTGATGGTCAAGGCGGCGACCCTGAAACCG 
CTGTACGCCCACTGCCTGGGGGCCGGGCCGAAGCCACGGATCACCGTGACCACCCATCCGACCCGCGACGGC 
CAGTCGGTCTGGTACCTCGGCGGCGACATCGCCGAAGCCGATGGCGTGGCCCGCGACGAAGCCGCGCAGATC 
GCCGAAGCACGCCGCGAACTGGCAAAGCTGCTGCCCTGGATCGACCTCGGCCAGGCGCAGTGGGCCACCTTG 
CGGGTGGATCGCGCCGAGCCGGCACAGTCCAACCTGTTGCGCCCGGACAACGCCTTCCTCGCCGAACAGGGA 
CGCCTGCTGGTCGGCTGGCCGACCAAGCTGGCGCTGGCCCCTGACTTCGCCGACCGGGTCTGCGCCCGCCTG 
GAAGAAGACGGCATCCGCCCCAGCGAACATGCCGCGCTGCCGCAACTGCCGCGTCCGCCGCTCGCCGAACCG 
GCCTGGGAGGTAGCCTTCGCATGA