ViewGene
Locus Name:
GeneID:
Location:

GeneID:1584
TrivialName: PA14_61360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61360
PAO1 Ortholog Locus:PA4636
Sequence Length:1161
Protein Length:386
Start: 5476906
Stop: 5478066
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08024.1|AE004878_2 (AE004878) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 385/386 (99%), Positives = 385/386 (99%)
Sequence:
ATGATGGGCGAGTTCGAAGCCATCCGACCCTACAGTGACGCCGAAGTCCCCGCGGTATTGCAACGCCTCCTG
AGCGACGACGCCTTCCTCGGCGCCCTGGTCCGCTACCGCTTCCCGCGCCTGGCCGGTCCCCTCGGTTGGCTG
CTCAAACCTCTTATAGCCCATCGCCTGGCCCGCGAGGTCACCGGCATCCGCAGCGTCGCCACGCTGCAGGAC
AAGTTCGAGCCCTACGTCGACCACACCATCGAGAAGGCCACCGATGGCGTCACCTACTCCGGGGTCAATCGC
CTCAAGCCAGGCTGCGCCTACCTGTTCATCGCCAACCACCGCGATATCGTGATGGACCCGGCCTTCGTCAAC
TACGCCGTGTACCACGCCGGCCTGCCGACCCCGCGCATCGCCATCGGCGACAACCTGCTGCAGAAATCCTTC
GTCAGCGACCTGATGCGCCTGAACAAGAGCTTCATCGTGCACCGTTCGCTGAGCGGCCGGCGCGAGAAGCTC
GCCGCCTACCAGACGCTCTCCGCCTACATCAACCACTCGATCCGCGAGGACCGCCAGTCGGTGTGGATCGCC
CAGGCCGAAGGGCGGGCCAAGGACGGCGACGACCGTACCGACTCGGCGATCCTCAAGATGTTCCACATGAGC
CGCAAGGACGAACCCTTCGCCGAAATGGTGCGCGCCCTGCATTTCATCCCGGTGTCGATCAGCTACGAATAC
GACCCCTGCGACCTGGCCAAGGCCCGCGAGTTGCACACCCGCGCCAGCACCGGCGAATACCGCAAGGCGCCG
GGCGAGGACGATGCCAGCATCGCCCTGGGCATCACCGGCTACAAGGGCCGCGTGCACATCAACTTCGGCGCC
GAACTGGAGGGCGAGTTCAGCGACGCCAAGCAGTTGGCCGCCGAACTGGACCGGCAGATCCTCGGCAACTAC
CGTCTGTTCCCGGTGCACTACCTGGCCTACGAGATGAGCGAGAACCGCGACCCGGGCCTCGCTGTCCCCACG
GCCGAGAGCCTGTTCGGCAGCGAAGAACTGGAGAAGGCGCGCAAGGAATGGAACCGCCGCCTGGAGCAATGC
CCGGCCGAGCAGCGCCCCTGGCTGGTGCTGCAATACGCCAACCCGGTACTCAACCAATACCGGATCAAGCAG
CAATCCTGA
Translation:
MMGEFEAIRPYSDAEVPAVLQRLLSDDAFLGALVRYRFPRLAGPLGWLLKPLIAHRLAREVTGIRSVATLQD
KFEPYVDHTIEKATDGVTYSGVNRLKPGCAYLFIANHRDIVMDPAFVNYAVYHAGLPTPRIAIGDNLLQKSF
VSDLMRLNKSFIVHRSLSGRREKLAAYQTLSAYINHSIREDRQSVWIAQAEGRAKDGDDRTDSAILKMFHMS
RKDEPFAEMVRALHFIPVSISYEYDPCDLAKARELHTRASTGEYRKAPGEDDASIALGITGYKGRVHINFGA
ELEGEFSDAKQLAAELDRQILGNYRLFPVHYLAYEMSENRDPGLAVPTAESLFGSEELEKARKEWNRRLEQC
PAEQRPWLVLQYANPVLNQYRIKQQS*
AnnotationID:1593GeneID:1584
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 14:02:03
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA4636
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01553
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01553, Acyltransferase, Acyltransferase. 
CD-Length = 132 residues, 100.0% aligned
Score = 49.6 bits (118), Expect = 6e-07
Identities = 32/150 (21%), Positives = 54/150 (36%), Gaps = 18/150 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3171




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20318




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31586




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1584_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1584
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2809
                           PA4636_tr
                           translation of PA4636
                           386
                           99.74
                           99.74
                           0
                           1995.0
     

     
     
87965
                           gb|AAG08024.1|AE004878_2
                           (AE004878) hypothetical protein PA4636 [Pseudomonas aeruginosa PAO1]
                           386
                           99.74
                           99.74
                           0
                           1995.0
     

     
     
87967
                           gb|AAO54669.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           388
                           73.71
                           83.24
                           3
                           1512.0
     

     
     
87966
                           gb|AAN66381.1|AE016266_3
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           423
                           69.03
                           77.30
                           37
                           1532.0
     

     
     
87968
                           dbj|BAC61759.1|
                           (AP005085) hypothetical protein [Vibrio parahaemolyticus]
                           395
                           45.56
                           60.25
                           35
                           843.0
     

     






      

          
GC ORFID: 44586How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4636Glimmer Score: 

          
Start: 4740586Stop: 4741746

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4636 translation of PA4636Homolog Bit Score 773.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5064 (ORF: BLASTX 594.0), t_PA4636 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGGGCGAGTTCGAAGCCATCCGACCCTACAGTGACGCCGAAGTCCCCGCGGTATTGCAACGCCTCCTG 
AGCGACGACGCCTTCCTCGGCGCCCTGGTCCGCTACCGCTTCCCGCGCCTGGCCGGTCCCCTCGGTTGGCTG 
CTCAAACCTCTTATAGCCCATCGCCTGGCCCGCGAGGTCACCGGCATCCGCAGCGTCGCCACGCTGCAGGAC 
AAGTTCGAGCCCTACGTCGACCACACCATCGAGAAGGCCACCGATGGCGTCACCTACTCCGGGGTCAATCGC 
CTCAAGCCAGGCTGCGCCTACCTGTTCATCGCCAACCACCGCGATATCGTGATGGACCCGGCCTTCGTCAAC 
TACGCCGTGTACCACGCCGGCCTGCCGACCCCGCGCATCGCCATCGGCGACAACCTGCTGCAGAAATCCTTC 
GTCAGCGACCTGATGCGCCTGAACAAGAGCTTCATCGTGCACCGTTCGCTGAGCGGCCGGCGCGAGAAGCTC 
GCCGCCTACCAGACGCTCTCCGCCTACATCAACCACTCGATCCGCGAGGACCGCCAGTCGGTGTGGATCGCC 
CAGGCCGAAGGGCGGGCCAAGGACGGCGACGACCGTACCGACTCGGCGATCCTCAAGATGTTCCACATGAGC 
CGCAAGGACGAACCCTTCGCCGAAATGGTGCGCGCCCTGCATTTCATCCCGGTGTCGATCAGCTACGAATAC 
GACCCCTGCGACCTGGCCAAGGCCCGCGAGTTGCACACCCGCGCCAGCACCGGCGAATACCGCAAGGCGCCG 
GGCGAGGACGATGCCAGCATCGCCCTGGGCATCACCGGCTACAAGGGCCGCGTGCACATCAACTTCGGCGCC 
GAACTGGAGGGCGAGTTCAGCGACGCCAAGCAGTTGGCCGCCGAACTGGACCGGCAGATCCTCGGCAACTAC 
CGTCTGTTCCCGGTGCACTACCTGGCCTACGAGATGAGCGAGAACCGCGACCCGGGCCTCGCTGTCCCCACG 
GCCGAGAGCCTGTTCGGCAGCGAAGAACTGGAGAAGGCGCGCAAGGAATGGAACCGCCGCCTGGAGCAATGC 
CCGGCCGAGCAGCGCCCCTGGCTGGTGCTGCAATACGCCAACCCGGTACTCAACCAATACCGGATCAAGCAG 
CAATCCTGA