ViewGene
Locus Name:
GeneID:
Location:

GeneID:1583
TrivialName: PA14_58630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58630
PAO1 Ortholog Locus:PA4519
Sequence Length:1164
Protein Length:387
Start: 5224984
Stop: 5223821
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07907.1|AE004866_1 (AE004866) probable ornithine decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 387/387 (100%), Positives = 387/387 (100%)
Sequence:
ATGTCCATCAAGGTCGAGGATTATTTCGCCCCTGAAACCTTCCAGCGCATGAAGGCCTTCGCCGACAAGCAG
GAAACCCCCTTCGTGGTCATCGACAAGCAAACCATCGCCGATGCCTACGACCAACTGACCGACTGCTTCCCC
TTCGCCAGGATCTACTACGCGGTGAAGGCCAATCCCGCTACCGAAATCACCGAGCTGCTGCGCGACAAGGGT
TCGAACTTCGATATCGCCTCGATCTACGAACTGGACAAGGTGATGAAGACCGGCGTCGGTCCGGAGCGCATC
AGCTACGGCAACACCATCAAGAAATCCAAGGACATCCGCTACTTCTACGAGAAGGGCGTGCGCTTGTTCGCC
ACCGACTCCGAAGCCGACCTGCGCAACATCGCCAAGGCCGCTCCCGGCGCCAAGGTCTACGTGCGTATCCTC
ACCGAGGGCTCGACTACCGCAGACTGGCCGTTGTCGCGCAAGTTCGGCTGCCAGACCGACATGGCCATGGAC
CTGCTGATCCTGGCCCGCCAGCTGGGCCTGGAGCCCTACGGCATTTCCTTCCACGTCGGTTCGCAGCAGCGC
GACATCTCGGTGTGGGACGCGGCGATCGCTAAGGTCAAGGTGATCTTCGAGCGCCTGAAGGAAGAAGACGGC
ATCGTCCTGAAGATGATCAACATGGGCGGCGGCTTCCCGGCCAACTACATCACCAAGACCAACGACCTGGAA
ACCTATGCGGAGGAGATCATCCGCTTCCTCAAGGAGGACTTCGGCGACGACCTGCCGGAAATCATCCTCGAG
CCGGGCCGTTCGCTGATCGCCAATGCCGGCATCCTGGTCAGCGAAGTGGTGCTGGTCGCCCGCAAGTCGCGG
ACCGCCGTGGAGCGCTGGGTCTATGCCGACGTCGGCAAGTTCTCCGGACTGATCGAAACCATGGACGAGTCG
ATCAAGTTCCCGATCTGGACCGAGAAGCAGGGCGAGATGGAAGAGGTGGTGATCGCCGGCCCGACCTGCGAC
AGCGCCGACATCATGTACGAGCACTACAAGTATGGCCTCCCGCTGAACCTGGCGAGCGGCGACCGCCTTTAC
TGGCTGTCTACCGGCGCCTACACCACCAGCTACAGTGCGGTGGAGTTCAACGGCTTCCCGCCGCTGAAGGCG
TTCTACCTCTAG
Translation:
MSIKVEDYFAPETFQRMKAFADKQETPFVVIDKQTIADAYDQLTDCFPFARIYYAVKANPATEITELLRDKG
SNFDIASIYELDKVMKTGVGPERISYGNTIKKSKDIRYFYEKGVRLFATDSEADLRNIAKAAPGAKVYVRIL
TEGSTTADWPLSRKFGCQTDMAMDLLILARQLGLEPYGISFHVGSQQRDISVWDAAIAKVKVIFERLKEEDG
IVLKMINMGGGFPANYITKTNDLETYAEEIIRFLKEDFGDDLPEIILEPGRSLIANAGILVSEVVLVARKSR
TAVERWVYADVGKFSGLIETMDESIKFPIWTEKQGEMEEVVIAGPTCDSADIMYEHYKYGLPLNLASGDRLY
WLSTGAYTTSYSAVEFNGFPPLKAFYL*
AnnotationID:1592GeneID:1583
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 14:02:23
Gene Name:
Confidence Code:3
GeneProduct:putative ornithine decarboxylase
Cell Localization:()
Synonyms:speC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0019,KOG0622,pfam02784
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66489.1|AE016277_8 (AE016777) ornithine decarboxylase, putative [Pseudomonas putida
           KT2440]
          Length = 371

 Score =  665 bits (1717), Expect = 0.0
 Identities = 331/371 (89%), Positives = 350/371 (94%)


>gb|AAO58018.1| (AE016872) pyridoxal-dependent decarboxylase, pyridoxal binding
           domain [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 359

 Score =  651 bits (1679), Expect = 0.0
 Identities = 323/359 (89%), Positives = 340/359 (94%)






 
Structural Features:
COG0019, LysA, Diaminopimelate decarboxylase 
[Amino acid transport and metabolism]
CD-Length = 394 residues,  99.7% aligned
Score =  329 bits (846), Expect = 5e-91
Identities = 136/401 (33%), Positives = 203/401 (50%), Gaps = 22/401 (5%)

KOG0622, Ornithine decarboxylase [Amino acid transport and metabolism]
CD-Length = 448 residues,  82.6% aligned
Score =  200 bits (509), Expect = 7e-52
Identities = 125/377 (33%), Positives = 180/377 (47%), Gaps = 20/377 (5%)

pfam02784, Orn_Arg_deC_N, Pyridoxal-dependent decarboxylase,
pyridoxal binding domain.
CD-Length = 246 residues,  93.9% aligned
Score =  179 bits (456), Expect = 8e-46
Identities = 87/232 (37%), Positives = 124/232 (53%), Gaps = 6/232 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3169




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20316




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31566




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1583_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2808
                           PA4519_tr
                           translation of PA4519
                           387
                           99.99
                           99.99
                           0
                           1997.0
     

     
     
87951
                           gb|AAG07907.1|AE004866_1
                           (AE004866) probable ornithine decarboxylase [Pseudomonas aeruginosa PAO1]
                           387
                           99.99
                           99.99
                           0
                           1997.0
     

     
     
87952
                           gb|AAN66489.1|AE016277_8
                           (AE016777) ornithine decarboxylase, putative [Pseudomonas putida KT2440]
                           387
                           85.52
                           90.43
                           16
                           1717.0
     

     
     
87953
                           gb|AAO58018.1|
                           (AE016872) pyridoxal-dependent decarboxylase, pyridoxal binding domain [Pseudomonas syringae pv. tomato str. DC3000]
                           387
                           83.46
                           87.85
                           28
                           1679.0
     

     
     
87954
                           gb|AAN57109.1|AE015844_11
                           (AE015844) decarboxylase, pyridoxal-dependent [Shewanella oneidensis MR-1]
                           391
                           71.86
                           84.65
                           4
                           1509.0
     

     






      

          
GC ORFID: 44585How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4519Glimmer Score: 

          
Start: 4488663Stop: 4487500

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4519 translation of PA4519Homolog Bit Score 773.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5428 (ORF: BLASTX 695.0), t_PA4519 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATCAAGGTCGAGGATTATTTCGCCCCTGAAACCTTCCAGCGCATGAAGGCCTTCGCCGACAAGCAG 
GAAACCCCCTTCGTGGTCATCGACAAGCAAACCATCGCCGATGCCTACGACCAACTGACCGACTGCTTCCCC 
TTCGCCAGGATCTACTACGCGGTGAAGGCCAATCCCGCTACCGAAATCACCGAGCTGCTGCGCGACAAGGGT 
TCGAACTTCGATATCGCCTCGATCTACGAACTGGACAAGGTGATGAAGACCGGCGTCGGTCCGGAGCGCATC 
AGCTACGGCAACACCATCAAGAAATCCAAGGACATCCGCTACTTCTACGAGAAGGGCGTGCGCTTGTTCGCC 
ACCGACTCCGAAGCCGACCTGCGCAACATCGCCAAGGCCGCTCCCGGCGCCAAGGTCTACGTGCGTATCCTC 
ACCGAGGGCTCGACTACCGCAGACTGGCCGTTGTCGCGCAAGTTCGGCTGCCAGACCGACATGGCCATGGAC 
CTGCTGATCCTGGCCCGCCAGCTGGGCCTGGAGCCCTACGGCATTTCCTTCCACGTCGGTTCGCAGCAGCGC 
GACATCTCGGTGTGGGACGCGGCGATCGCTAAGGTCAAGGTGATCTTCGAGCGCCTGAAGGAAGAAGACGGC 
ATCGTCCTGAAGATGATCAACATGGGCGGCGGCTTCCCGGCCAACTACATCACCAAGACCAACGACCTGGAA 
ACCTATGCGGAGGAGATCATCCGCTTCCTCAAGGAGGACTTCGGCGACGACCTGCCGGAAATCATCCTCGAG 
CCGGGCCGTTCGCTGATCGCCAATGCCGGCATCCTGGTCAGCGAAGTGGTGCTGGTCGCCCGCAAGTCGCGG 
ACCGCCGTGGAGCGCTGGGTCTATGCCGACGTCGGCAAGTTCTCCGGACTGATCGAAACCATGGACGAGTCG 
ATCAAGTTCCCGATCTGGACCGAGAAGCAGGGCGAGATGGAAGAGGTGGTGATCGCCGGCCCGACCTGCGAC 
AGCGCCGACATCATGTACGAGCACTACAAGTATGGCCTCCCGCTGAACCTGGCGAGCGGCGACCGCCTTTAC 
TGGCTGTCTACCGGCGCCTACACCACCAGCTACAGTGCGGTGGAGTTCAACGGCTTCCCGCCGCTGAAGGCG 
TTCTACCTCTAG