ViewGene
Locus Name:
GeneID:
Location:

GeneID:1582
TrivialName: PA14_38990
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 01:01:28
LocusName:PA14_38990
PAO1 Ortholog Locus:PA1975
Sequence Length:1164
Protein Length:387
Start: 3474922
Stop: 3473759
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05363.1|AE004624_2 (AE004624) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 386/387 (99%), Positives = 386/387 (99%)
Sequence:
ATGTACGAAGGGCAGGGGGAAGGGGTCTGCAGGGGCATGTCCAGCGCCCGCGACGTCGAAGTGGTGGCCCAG
GACCTGGCGCGCCAGCTTATCCATCCGCACCTGGGCTTCGTGCTGTTCTTCTGTTCCGCGGAATACGACCTG
CCGGCCCTCGGCGAGATGCTCGAACGCTACTTCGGCGGCATCGACCTGGTCGGTTGCACCACCGCCGGCGAG
ATCACTCCGGCGGGCTACGGGCGCGGCTGCGTCAGCGCGGTGGGCTTCGACGTGCGCAGCTTCGCCATCAGC
AGCGCGCTGATCGACGAAATGGAGCGCTTCAGCCTGCTGGACGCGCAGCAGATGGTCGAGACCCTGGTGGCC
GGCTGTCGCCGCGGCGGCCTGGCGCCGATCAAGGACCACAGCTTCGCCCTGACCCTGCTCGACGGCCTGTCC
AGCCGCGAAGAGGTGGTGCTCGCCGCGCTTGGCGCGGCGCTCGGCGCGATCCCGCATTTCGGTGGCTCGGCC
GGCGACGACCGGCACCTGACCCACACCCATGTCTACCACCAGGGCCAGTTCCATACCGGGGCGGCAGTGGTG
GTGCTGGTCAACACCTGGCTGGACTTCGAGGTCTTCACCACCCATCACGTGGTGCCGCGCGCCGAAAAGTTG
GTGGTGACCCGCGCCGACAGCGGCAGCCGGCGGGTCCACGAACTCAACGCCGAGCCGGCGGCGCTGGAATAC
GCCCGGCTGGTCGGGGTGGCACCGCAGGCGCTGGATTTCGCCCTGTTCTCCGCGCATCCGCTGGCGGTGCGG
GTCGACGAACGCTATTACGTGCGCTCGATCCAGCAGGCCAACGAGGACCTGAGCCTGACGTTCTACTGTGCG
GTGGAGAACGGCATCGTTCTCACCGCGATGAGCACCGGCCCGCTGTTGCCCAACCTGGAGGCGCAGTTCCGC
CGCCTCCACGAGCGCCTCGGACCGCCGTTGCTGACCATCGGTTGCGACTGCTTCCTGCGGCGCCTGGAGCTG
GAGGTCGGCGGTGACACGCAAGCTACCGCCGCGTTTCTCCGCAGCCAGCAGGTGATCGGCTTCAACACCTAC
GGAGAGCAATTCAATGGCATGCATATCAACCAGACCTTCACCGGGGTCGCCATTGGCCGACCCCGTGGAGGT
GTCCGTCGCTGA
Translation:
MYEGQGEGVCRGMSSARDVEVVAQDLARQLIHPHLGFVLFFCSAEYDLPALGEMLERYFGGIDLVGCTTAGE
ITPAGYGRGCVSAVGFDVRSFAISSALIDEMERFSLLDAQQMVETLVAGCRRGGLAPIKDHSFALTLLDGLS
SREEVVLAALGAALGAIPHFGGSAGDDRHLTHTHVYHQGQFHTGAAVVVLVNTWLDFEVFTTHHVVPRAEKL
VVTRADSGSRRVHELNAEPAALEYARLVGVAPQALDFALFSAHPLAVRVDERYYVRSIQQANEDLSLTFYCA
VENGIVLTAMSTGPLLPNLEAQFRRLHERLGPPLLTIGCDCFLRRLELEVGGDTQATAAFLRSQQVIGFNTY
GEQFNGMHINQTFTGVAIGRPRGGVRR*
AnnotationID:1591GeneID:1582
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 16:04:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1975
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20314




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32750




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1582_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1582
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2807
                           PA1975_tr
                           translation of PA1975
                           387
                           99.74
                           99.74
                           0
                           1995.0
     

     
     
87948
                           gb|AAG05363.1|AE004624_2
                           (AE004624) hypothetical protein PA1975 [Pseudomonas aeruginosa PAO1]
                           387
                           99.74
                           99.74
                           0
                           1995.0
     

     
     
87949
                           gb|AAN68271.1|AE016461_7
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           387
                           74.16
                           81.65
                           0
                           1460.0
     

     
     
87950
                           dbj|BAC45593.1|
                           (AP005936) blr0328 [Bradyrhizobium japonicum USDA 110]
                           403
                           38.95
                           53.10
                           31
                           674.0
     

     






      

          
GC ORFID: 44584How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1975Glimmer Score: 

          
Start: 1478989Stop: 1480152

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1975 translation of PA1975Homolog Bit Score 773.0

          
Other Homologs:  t_PA1975 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGAAGGGCAGGGGGAAGGGGTCTGCAGGGGCATGTCCAGCGCCCGCGACGTCGAAGTGGTGGCCCAG 
GACCTGGCGCGCCAGCTTATCCATCCGCACCTGGGCTTCGTGCTGTTCTTCTGTTCCGCGGAATACGACCTG 
CCGGCCCTCGGCGAGATGCTCGAACGCTACTTCGGCGGCATCGACCTGGTCGGTTGCACCACCGCCGGCGAG 
ATCACTCCGGCGGGCTACGGGCGCGGCTGCGTCAGCGCGGTGGGCTTCGACGTGCGCAGCTTCGCCATCAGC 
AGCGCGCTGATCGACGAAATGGAGCGCTTCAGCCTGCTGGACGCGCAGCAGATGGTCGAGACCCTGGTGGCC 
GGCTGTCGCCGCGGCGGCCTGGCGCCGATCAAGGACCACAGCTTCGCCCTGACCCTGCTCGACGGCCTGTCC 
AGCCGCGAAGAGGTGGTGCTCGCCGCGCTTGGCGCGGCGCTCGGCGCGATCCCGCATTTCGGTGGCTCGGCC 
GGCGACGACCGGCACCTGACCCACACCCATGTCTACCACCAGGGCCAGTTCCATACCGGGGCGGCAGTGGTG 
GTGCTGGTCAACACCTGGCTGGACTTCGAGGTCTTCACCACCCATCACGTGGTGCCGCGCGCCGAAAAGTTG 
GTGGTGACCCGCGCCGACAGCGGCAGCCGGCGGGTCCACGAACTCAACGCCGAGCCGGCGGCGCTGGAATAC 
GCCCGGCTGGTCGGGGTGGCACCGCAGGCGCTGGATTTCGCCCTGTTCTCCGCGCATCCGCTGGCGGTGCGG 
GTCGACGAACGCTATTACGTGCGCTCGATCCAGCAGGCCAACGAGGACCTGAGCCTGACGTTCTACTGTGCG 
GTGGAGAACGGCATCGTTCTCACCGCGATGAGCACCGGCCCGCTGTTGCCCAACCTGGAGGCGCAGTTCCGC 
CGCCTCCACGAGCGCCTCGGACCGCCGTTGCTGACCATCGGTTGCGACTGCTTCCTGCGGCGCCTGGAGCTG 
GAGGTCGGCGGTGACACGCAAGCTACCGCCGCGTTTCTCCGCAGCCAGCAGGTGATCGGCTTCAACACCTAC 
GGAGAGCAATTCAATGGCATGCATATCAACCAGACCTTCACCGGGGTCGCCATTGGCCGACCCCGTGGAGGT 
GTCCGTCGCTGA