ViewGene

Locus Name:
GeneID:
Location:

GeneID:1581
TrivialName: PA14_49070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49070
PAO1 Ortholog Locus:PA1188
Sequence Length:1182
Protein Length:393
Start: 4359048
Stop: 4357867
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04577.1|AE004549_4 (AE004549) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 392/393 (99%), Positives = 392/393 (99%)
Sequence:
ATGAAAGGCCCGTTGTCATCGTTGAAAGTGCTGGATTTCTCGACCCTGTTGCCGGGGCCGTTCGCCTCGCTG
CTGCTGGCCGACATGGGGGCCGACGTGCTGCGCGTGGAGTCGCCCGGGCGCATGGACCTGGTGCGGGTGCTG
CCGCCGCACGTCGATGGCACCTCGGCCAGCCATGCCTACCTGAACCGCAACAAGCGTTCCATCGGCCTCGAC
CTGAAGCGGCAGGGCGCACGCGAGGTGGTGCTGGAGCTGGTACGCGAATACGACATCGTCCTCGAACAGTTC
CGTCCGGGGGTGATGGACAAGCTCGGCGTCGGCTACGAGGCGCTGAAGGCGGCGAACCCGCGACTGATCTAC
GTGGCCATCACCGGCTACGGCCAGACCGGGCCGTACCGCGAGCGCGCCGGGCATGACATCAACTACCTGGCG
CTGGCCGGCGTCGCCAGCTACACCGGGCGCCGCGAGCGTGGCCCGTTGCCGCTGGGGGTGCAACTGGCGGAC
CTCGCCGGTGGTTCGTTGCATGGCGTGATGGGCCTGCTGGCGGCGGTCATCCACCGGCAGCAGACCGGCGAG
GGGCAGTTCGTCGACATCAGCATGACCGACTGCGCCTTCAGCCTGAACGGCATGGCCGGCGCAGGCTATCTC
GCGGCCGGGGTCGAGCCGGAGATGGAGGCGCTGGCGCTGAACGGCGGCAGCTTCTATGACTACTACCGCACC
CGCGATGGCCGCTGGTTCTCGGTGGGCAGCCTGGAACCGCAGTTCATGCAGCAATTCTGCGCCGCCATCGGC
CGCCCGGAACTGGCCGCCCGCGGCCTGTCGCCGAAGCCGGAAGAGCAGCGGGCGCTGAAGCGCGAGATCGAG
ATGGAGTTCGAGAAACGCGACTTCGCCGAATGGCAGGCGGTGTTCGCCGCCCTGGATGCCTGCGTGGAGCCG
CTGCTGCCGCTCTCCGAGGCGCTGGAGCACCCGCAGTTGCAGGCGCGCGGGCTGGTCGCCCGGGTGCCGCTG
GCGGACGGCGGCAGCCAGGCGCAGATGGCCTGTCCGATCAAGTTTTCCGCCGGCCTGTCGGCGCCTCGCCAC
ATCGGCGCGGCGCTCGGCGCCGACACCGTGGCGGTGCTCGAAGGCCTGGGCTACTCCGCCGAACGGATCGCC
GAGCTGAAGGCGGCCGGGGCCATTGCCTGA
Translation:
MKGPLSSLKVLDFSTLLPGPFASLLLADMGADVLRVESPGRMDLVRVLPPHVDGTSASHAYLNRNKRSIGLD
LKRQGAREVVLELVREYDIVLEQFRPGVMDKLGVGYEALKAANPRLIYVAITGYGQTGPYRERAGHDINYLA
LAGVASYTGRRERGPLPLGVQLADLAGGSLHGVMGLLAAVIHRQQTGEGQFVDISMTDCAFSLNGMAGAGYL
AAGVEPEMEALALNGGSFYDYYRTRDGRWFSVGSLEPQFMQQFCAAIGRPELAARGLSPKPEEQRALKREIE
MEFEKRDFAEWQAVFAALDACVEPLLPLSEALEHPQLQARGLVARVPLADGGSQAQMACPIKFSAGLSAPRH
IGAALGADTVAVLEGLGYSAERIAELKAAGAIA*
AnnotationID:1590GeneID:1581
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1804, KOG3957
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3165
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:16980
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA1188_CDS.cgi
URL:
ReferenceID:20312
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1581

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2806 PA1188_tr translation of PA1188 393 99.74 99.74 0 1996.0
87941 gb|AAG04577.1|AE004549_4 (AE004549) hypothetical protein PA1188 [Pseudomonas aeruginosa PAO1] 393 99.74 99.74 0 1996.0
87944 emb|CAB40680.1| (AL939129) putative racemase [Streptomyces coelicolor A3(2)] 424 38.67 51.41 57 659.0
87946 emb|CAB39718.1| (AL939129) probable fatty acid co-A racemase [Streptomyces coelicolor A3(2)] 411 37.95 49.14 42 588.0
87945 dbj|BAC69393.1| (AP005027) putative fatty acid-CoA racemase [Streptomyces avermitilis MA-4680] 429 37.76 51.51 68 636.0
GC ORFID: 44583How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1188Glimmer Score:
Start: 594860Stop: 596041
Length: 1182
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1188 translation of PA1188Homolog Bit Score 773.0
Other Homologs: t_PA1188 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAGGCCCGTTGTCATCGTTGAAAGTGCTGGATTTCTCGACCCTGTTGCCGGGGCCGTTCGCCTCGCTG
CTGCTGGCCGACATGGGGGCCGACGTGCTGCGCGTGGAGTCGCCCGGGCGCATGGACCTGGTGCGGGTGCTG
CCGCCGCACGTCGATGGCACCTCGGCCAGCCATGCCTACCTGAACCGCAACAAGCGTTCCATCGGCCTCGAC
CTGAAGCGGCAGGGCGCACGCGAGGTGGTGCTGGAGCTGGTACGCGAATACGACATCGTCCTCGAACAGTTC
CGTCCGGGGGTGATGGACAAGCTCGGCGTCGGCTACGAGGCGCTGAAGGCGGCGAACCCGCGACTGATCTAC
GTGGCCATCACCGGCTACGGCCAGACCGGGCCGTACCGCGAGCGCGCCGGGCATGACATCAACTACCTGGCG
CTGGCCGGCGTCGCCAGCTACACCGGGCGCCGCGAGCGTGGCCCGTTGCCGCTGGGGGTGCAACTGGCGGAC
CTCGCCGGTGGTTCGTTGCATGGCGTGATGGGCCTGCTGGCGGCGGTCATCCACCGGCAGCAGACCGGCGAG
GGGCAGTTCGTCGACATCAGCATGACCGACTGCGCCTTCAGCCTGAACGGCATGGCCGGCGCAGGCTATCTC
GCGGCCGGGGTCGAGCCGGAGATGGAGGCGCTGGCGCTGAACGGCGGCAGCTTCTATGACTACTACCGCACC
CGCGATGGCCGCTGGTTCTCGGTGGGCAGCCTGGAACCGCAGTTCATGCAGCAATTCTGCGCCGCCATCGGC
CGCCCGGAACTGGCCGCCCGCGGCCTGTCGCCGAAGCCGGAAGAGCAGCGGGCGCTGAAGCGCGAGATCGAG
ATGGAGTTCGAGAAACGCGACTTCGCCGAATGGCAGGCGGTGTTCGCCGCCCTGGATGCCTGCGTGGAGCCG
CTGCTGCCGCTCTCCGAGGCGCTGGAGCACCCGCAGTTGCAGGCGCGCGGGCTGGTCGCCCGGGTGCCGCTG
GCGGACGGCGGCAGCCAGGCGCAGATGGCCTGTCCGATCAAGTTTTCCGCCGGCCTGTCGGCGCCTCGCCAC
ATCGGCGCGGCGCTCGGCGCCGACACCGTGGCGGTGCTCGAAGGCCTGGGCTACTCCGCCGAACGGATCGCC
GAGCTGAAGGCGGCCGGGGCCATTGCCTGA