ViewGene
Locus Name:
GeneID:
Location:

GeneID:1580
TrivialName: PA14_49580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49580
PAO1 Ortholog Locus:PA1146
Sequence Length:1182
Protein Length:393
Start: 4411200
Stop: 4412381
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04535.1|AE004544_7 (AE004544) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 391/393 (99%), Positives = 391/393 (99%)
Sequence:
ATGAGCGACCTGCATTACTGGAACTACCCCACCGATATCCTCTGCGGCGTCGGCGCCCTGGAACAACTGCCG
AGGCGTTGCGCGCTGGCGGGCGCACGCCGGCCCCTGCTGGTCACCGATCCCGGCATGCTCGCCCTGGAGCCC
CTGCGCCTGGTGCGCGAGTGCCTGGAACGCGCCGGCATCGACCATGACCTGTTCCACGAACTGTCGAGCAAC
CCCAGCCTCGCTGAAGTCCAGGGCGGCGCCAGGCGCTTCGAGGCTGGCGGGCATGACGCGCTGATCGCCCTC
GGCGGCGGCAGCGCCCTCGACGCGGCCAAGGGTATCGCCCTGCTCAGCCGCGATCCGCACGGCCTCGAACGC
TTCGAATGGACACAGACGCTGCGCAGCTATCCGACCCTCGCCGACTACCCGCTGCTCGGCCTGCCGCCGCTG
CTGGCGCTGCCCACGACCGCCGGCACCGGCTCGGAACTGGGACGCGAGGCGGTGCTGACCGACACGCAACTG
GGCATCAAGCGGGTCGTCGGCCATCGCGAGCTGCTGGCCGCCTGCGTATTCCTCGACCCGCGCCTGACCCGC
GGGTTGCCGCCGGCGCTGAGCGCCGCCACCGGCATGGACGCCCTCACCCATCACCTGGAGGCGCTGTTCTCG
CCGCTCTACCATCCGATGTCGGCGGGCATCGCCCTGGAAGGCGTGCGCCTGGTCAGGCAGCACCTGGAAAAC
GCCGTGCGCGACGGCAACGACCTCGCCGCCCGGGAAGGCATGCTGGTAGCCTCGGCCAGCGCCGCGGTGGCA
TTCCAGAAGGGGCTTGGCGGGGTCCACGCCCTGGCCCACCCGCTGGGCGCTCGCCATCACCTGCACCACGGC
CTGCTGAACGCCGTGCTGCTGCCCTACGTTCTGCTGGCCAACCGCCCGGCGATAGAAGCCGACGCCGCGCGC
CTGGCGCGCTACCTGGAACTCGACGAAGCGAGCTTCGACGGCCTGCTGGCGTGGATCCTCGAACTGCGCGCG
CGCATCGGCATCCCGGCGAACCTCGCCGCCCTCGGCCTGGACGGCGAGGACGCGCAATGGGTGGGCGAGCAG
GCGCTGGCCGACCTGTCCTCCTCGGCGACCAACGCCCTGCCGCTCGATGCCCGGGATTATGCGCGCATCTAC
CGCCAGGCGGTGGCCGGGACTCTCGCCTGA
Translation:
MSDLHYWNYPTDILCGVGALEQLPRRCALAGARRPLLVTDPGMLALEPLRLVRECLERAGIDHDLFHELSSN
PSLAEVQGGARRFEAGGHDALIALGGGSALDAAKGIALLSRDPHGLERFEWTQTLRSYPTLADYPLLGLPPL
LALPTTAGTGSELGREAVLTDTQLGIKRVVGHRELLAACVFLDPRLTRGLPPALSAATGMDALTHHLEALFS
PLYHPMSAGIALEGVRLVRQHLENAVRDGNDLAAREGMLVASASAAVAFQKGLGGVHALAHPLGARHHLHHG
LLNAVLLPYVLLANRPAIEADAARLARYLELDEASFDGLLAWILELRARIGIPANLAALGLDGEDAQWVGEQ
ALADLSSSATNALPLDARDYARIYRQAVAGTLA*
AnnotationID:1589GeneID:1580
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 14:02:01
Gene Name:
Confidence Code:3
GeneProduct:probable iron-containing alcohol dehydrogenase
Cell Localization:()
Synonyms:PA1146
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1454, pfam00465, COG1979
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1454, EutG, Alcohol dehydrogenase, class IV. Score: 369, 3e-103
pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase. Score: 247, 2e-66
COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase
family. Score: 109, 7e-25






   
Genomic Context:






   
Comment:


















    ReferenceID:3163




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20310




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1580
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2805
                           PA1146_tr
                           translation of PA1146
                           393
                           99.49
                           99.49
                           0
                           1996.0
     

     
     
87932
                           gb|AAG04535.1|AE004544_7
                           (AE004544) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
                           393
                           99.49
                           99.49
                           0
                           1996.0
     

     
     
87933
                           gb|AAO56449.1|
                           (AE016866) methanol dehydrogenase, NAD-dependent [Pseudomonas syringae pv. tomato str. DC3000]
                           399
                           44.86
                           61.15
                           21
                           818.0
     

     
     
87937
                           gb|AAL53795.1|
                           (AE009691) ALCOHOL DEHYDROGENASE [Brucella melitensis 16M]
                           403
                           41.19
                           58.06
                           24
                           759.0
     

     
     
87938
                           gb|AAN33916.1|AE014569_7
                           (AE014569) alcohol dehydrogenase, iron-containing [Brucella suis 1330]
                           403
                           40.94
                           58.06
                           24
                           758.0
     

     






      

          
GC ORFID: 44582How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1146Glimmer Score: 

          
Start: 542708Stop: 541527

          
Length: 1182


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1146 translation of PA1146Homolog Bit Score 773.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1310 (ORF: BLASTX 312.0), t_PA1146 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACCTGCATTACTGGAACTACCCCACCGATATCCTCTGCGGCGTCGGCGCCCTGGAACAACTGCCG 
AGGCGTTGCGCGCTGGCGGGCGCACGCCGGCCCCTGCTGGTCACCGATCCCGGCATGCTCGCCCTGGAGCCC 
CTGCGCCTGGTGCGCGAGTGCCTGGAACGCGCCGGCATCGACCATGACCTGTTCCACGAACTGTCGAGCAAC 
CCCAGCCTCGCTGAAGTCCAGGGCGGCGCCAGGCGCTTCGAGGCTGGCGGGCATGACGCGCTGATCGCCCTC 
GGCGGCGGCAGCGCCCTCGACGCGGCCAAGGGTATCGCCCTGCTCAGCCGCGATCCGCACGGCCTCGAACGC 
TTCGAATGGACACAGACGCTGCGCAGCTATCCGACCCTCGCCGACTACCCGCTGCTCGGCCTGCCGCCGCTG 
CTGGCGCTGCCCACGACCGCCGGCACCGGCTCGGAACTGGGACGCGAGGCGGTGCTGACCGACACGCAACTG 
GGCATCAAGCGGGTCGTCGGCCATCGCGAGCTGCTGGCCGCCTGCGTATTCCTCGACCCGCGCCTGACCCGC 
GGGTTGCCGCCGGCGCTGAGCGCCGCCACCGGCATGGACGCCCTCACCCATCACCTGGAGGCGCTGTTCTCG 
CCGCTCTACCATCCGATGTCGGCGGGCATCGCCCTGGAAGGCGTGCGCCTGGTCAGGCAGCACCTGGAAAAC 
GCCGTGCGCGACGGCAACGACCTCGCCGCCCGGGAAGGCATGCTGGTAGCCTCGGCCAGCGCCGCGGTGGCA 
TTCCAGAAGGGGCTTGGCGGGGTCCACGCCCTGGCCCACCCGCTGGGCGCTCGCCATCACCTGCACCACGGC 
CTGCTGAACGCCGTGCTGCTGCCCTACGTTCTGCTGGCCAACCGCCCGGCGATAGAAGCCGACGCCGCGCGC 
CTGGCGCGCTACCTGGAACTCGACGAAGCGAGCTTCGACGGCCTGCTGGCGTGGATCCTCGAACTGCGCGCG 
CGCATCGGCATCCCGGCGAACCTCGCCGCCCTCGGCCTGGACGGCGAGGACGCGCAATGGGTGGGCGAGCAG 
GCGCTGGCCGACCTGTCCTCCTCGGCGACCAACGCCCTGCCGCTCGATGCCCGGGATTATGCGCGCATCTAC 
CGCCAGGCGGTGGCCGGGACTCTCGCCTGA