ViewGene
Locus Name:
GeneID:
Location:

GeneID:158
TrivialName: PA14_65060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65060
PAO1 Ortholog Locus:PA4927
Sequence Length:2499
Protein Length:832
Start: 5799772
Stop: 5797274
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08312.1|AE004905_10 (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 826/832 (99%), Positives = 829/832 (99%), Gaps = 2/832 (0%)
Sequence:
ATGCCCGAGCTGCTTGCCCACTATCCGTTCACCGATACGGCCTACCATGAGCTGCTCGATCGCCAGGGTGGC
GTGCGTCCCCATTGGCAGCGGCTGTTCCGCCAACTGGAGCGCAGCAGCCCTGAGCAACTGCGCCAGCGCCAG
GCCCTGGTGGAACGGCAGATCCAGGAGAACGGCGTCACCTACAACGTCTACGCCGATCCCAAGGGCACCGAC
CGCCCCTGGGCGCTGGACCTTCTGCCGAACCTGCTGTCCGCCGCCGAGTGGCAGCCGATTGCCGCCGGCGTG
GCACAGCGTGCTCGGCTGCTCAACGCGCTGCTGGCCGACCTGTACGGCGAGCAGCGTCTGCTCGCCGAAGGG
CTGCTGCCCAGCGAACTGGTCTTCGGCCATCCGAACTTCCTCTGGCCGGCGCTCGGCATCCGGCCGCCCGGC
GGGATTTTCCTGCACAGCTATGCCGTCGACCTGGCGCGCGATGCCGACGGACGCTGGCAGGTCCTTGCCGAC
CGCACCCAGGCGCCGTCCGGCGCGGGCTATGCGCTGGAGAACCGGCAGATCGTCTCGCGGGCCTTGCCGGAA
CTCTATCGCGACCTGCGTGTGCAGCATCTCGCCGGGTATTTCCGCACCCTGCAGGAGACCCTCGCCAGCCAG
GCCGCCGGCGACGGCGAGACGCCGCTGGTGGTGCTGCTGACTCCCGGACGTTTCAACGAAACCTACTTCGAG
CATCTCTACCTGGCGCGCCAGCTCGGTTTCCCGCTGGTCGAGGGGCACGACCTGACGGTGCGCGACGCCACC
CTCTATCTCAAGACCCTCGGCGGCCTGAAACGGGTGCATGCGGTATTGCGGCGCCTCGATGACGACTTCTGC
GATCCGCTGGAATTGCGTACCGACTCGGCGCTGGGCATTCCCGGCCTGCTCGAGGCGGTACGCCAGGGGCGC
GTACTGGTGGCCAACGCGTTGGGCAGCGGGGTGCTGGAATCGCCCGGCCTGCTCGGCTTACTGCCGCAGGCC
TGTCGCCGCCTGCTTGGCGAGGAACTGGCGCTGCCCTCGCTCGACACCCGCTGGTGCGGCGAGCCGCAAGCC
CTCGAGGCGATACTCGCGGCACTGCCCGACCTGGTGATCAAGCCGGCCTTTCCCGGCCAGCGCTGCGAACCG
CTGTTCGGCCACGCCCTCGACAGTGCCGGCCTGGCATCCCTCGGCGAGCGCTTGCGCGAGCGCCCGCAGGCC
TACGTGGCGCAACGCCTGGCGCAGTTGTCCCAGGCACCGGTCTGGCGCGACGGCGAGGCCGGCGTCGGCCTG
CAGTCGCGGGCCATCGGCATGCGCGTGTTCGCCGTCGCCGCCGCCGACGGACGCTACTGGGTGATGCCCGGC
GGCCTGACCCGCGTAGCCTCGGCGGCGGATGCCGAGGTGGTGTCGATGCAACGCGGCGGGGCGAGCAAGGAC
ACCTGGGTGCTGGCCGAGCGAGCAGTCGGCGGCGAGCCGTTGCGACCGCGCCGGCTCGGCGTGCGCGACCTG
GTCCGCGAGGATCCCTACCTGCCGTCGCGGGTGGTGGAGAACCTGTTCTGGTACGGCCGCTATGCCGAGCGT
TGCGACGACCATGCGCGCCTGTTGCGGGTGGTGCTGTCGCGCTACGTGGATGCCGATGGCGACGAAGAGGCG
TTGCGCAGCGCCCTGGCCCTGGCCGGCGGCATCGGCCTGCTGCCCGGGGATGGCGAGCCGTTGGAAAGGTGC
CTGTTGCGGGCGTTGCTCGACGAGCACTGGCCGGCGAGCCTGTGCGCCAACCTGCGGCGCCTGCACTGGGCG
GCGGCGCAGGTGCGCGGGCGCTTGTCCGGGGAGAACTGGCTGGCCTTGCTGGAGCTGCAACGCGACATGCAG
GCGCTCGATCCGGCACGCACCGACCTCGGCGAAGCGCTGGACTTCCTCAACCGGCTAGTGATGTCCCTGGCA
GCCTTGTCCGGTTTCGCCCTCGACGACATGACCCGCGACGACGGCTGGCGTTTCCTGATGATCGGCCGGCGC
ATCGAGCGCGTGCGCTTCTTCGCCGAGAGCATCGCCGCCTTCCTCGACGGCGGTAGCGCCTGGGACGCCGGC
GCGCTGGAATGGCTGCTGGAACTGGGTAACAGCGGCATCACCTACCGCTCGCGCTACCTGGCGTCGCCGCAA
CTGGTCCCGGTGCTCGACCTGCTCCTGTTGCACGAGCAGAACCCGCACTCGCTGCGCTTCCAGTTGCAGGCC
CTGGAGCGTTCGCTGGAGCGCCTGCACGAGGAGTTCGGCGCGCCACGCGAGCGGGAACTCAGGACCCTGGGC
GAACGCCTGCGCAGCTTCGATCTGGCGGCCCTGGAAAGCCCGCTGTTCGGCGCGGCAGGACTCGACGAGGTG
CTCGTCGGGCTGGCGCGACTGCTGCGCGACATCGCCGCCTGCGCCGGACAGGTCTCCGATCGGCTAGGCTTG
CGCTATTTCGCCCATGTCGACGATGTCAGCCAGAGAACGGTATCCACCTGA
Translation:
MPELLAHYPFTDTAYHELLDRQGGVRPHWQRLFRQLERSSPEQLRQRQALVERQIQENGVTYNVYADPKGTD
RPWALDLLPNLLSAAEWQPIAAGVAQRARLLNALLADLYGEQRLLAEGLLPSELVFGHPNFLWPALGIRPPG
GIFLHSYAVDLARDADGRWQVLADRTQAPSGAGYALENRQIVSRALPELYRDLRVQHLAGYFRTLQETLASQ
AAGDGETPLVVLLTPGRFNETYFEHLYLARQLGFPLVEGHDLTVRDATLYLKTLGGLKRVHAVLRRLDDDFC
DPLELRTDSALGIPGLLEAVRQGRVLVANALGSGVLESPGLLGLLPQACRRLLGEELALPSLDTRWCGEPQA
LEAILAALPDLVIKPAFPGQRCEPLFGHALDSAGLASLGERLRERPQAYVAQRLAQLSQAPVWRDGEAGVGL
QSRAIGMRVFAVAAADGRYWVMPGGLTRVASAADAEVVSMQRGGASKDTWVLAERAVGGEPLRPRRLGVRDL
VREDPYLPSRVVENLFWYGRYAERCDDHARLLRVVLSRYVDADGDEEALRSALALAGGIGLLPGDGEPLERC
LLRALLDEHWPASLCANLRRLHWAAAQVRGRLSGENWLALLELQRDMQALDPARTDLGEALDFLNRLVMSLA
ALSGFALDDMTRDDGWRFLMIGRRIERVRFFAESIAAFLDGGSAWDAGALEWLLELGNSGITYRSRYLASPQ
LVPVLDLLLLHEQNPHSLRFQLQALERSLERLHEEFGAPRERELRTLGERLRSFDLAALESPLFGAAGLDEV
LVGLARLLRDIAACAGQVSDRLGLRYFAHVDDVSQRTVST*
AnnotationID:168GeneID:158
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 11:11:25
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4927
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:319




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17461




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35122




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:158_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:158
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
284
                           PA4927_tr
                           translation of PA4927
                           832
                           99.27
                           99.63
                           2
                           4248.0
     

     
     
18356
                           gb|AAG08312.1|AE004905_10
                           (AE004905) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           832
                           99.27
                           99.63
                           2
                           4248.0
     

     
     
18357
                           gb|AAO58353.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           835
                           68.62
                           80.35
                           7
                           2921.0
     

     
     
18358
                           emb|CAE29194.1|
                           (BX572605) DUF404 [Rhodopseudomonas palustris CGA009]
                           933
                           35.79
                           48.66
                           201
                           1345.0
     

     
     
18359
                           gb|AAG05119.1|AE004599_4
                           (AE004599) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           832
                           23.31
                           32.57
                           362
                           886.0
     

     






      

          
GC ORFID: 43160How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4927Glimmer Score: 

          
Start: 5063453Stop: 5060955

          
Length: 2499


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4927 translation of PA4927Homolog Bit Score 1640.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3447 (ORF: BLASTX 1133.0), t_PA4927 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAGCTGCTTGCCCACTATCCGTTCACCGATACGGCCTACCATGAGCTGCTCGATCGCCAGGGTGGC 
GTGCGTCCCCATTGGCAGCGGCTGTTCCGCCAACTGGAGCGCAGCAGCCCTGAGCAACTGCGCCAGCGCCAG 
GCCCTGGTGGAACGGCAGATCCAGGAGAACGGCGTCACCTACAACGTCTACGCCGATCCCAAGGGCACCGAC 
CGCCCCTGGGCGCTGGACCTTCTGCCGAACCTGCTGTCCGCCGCCGAGTGGCAGCCGATTGCCGCCGGCGTG 
GCACAGCGTGCTCGGCTGCTCAACGCGCTGCTGGCCGACCTGTACGGCGAGCAGCGTCTGCTCGCCGAAGGG 
CTGCTGCCCAGCGAACTGGTCTTCGGCCATCCGAACTTCCTCTGGCCGGCGCTCGGCATCCGGCCGCCCGGC 
GGGATTTTCCTGCACAGCTATGCCGTCGACCTGGCGCGCGATGCCGACGGACGCTGGCAGGTCCTTGCCGAC 
CGCACCCAGGCGCCGTCCGGCGCGGGCTATGCGCTGGAGAACCGGCAGATCGTCTCGCGGGCCTTGCCGGAA 
CTCTATCGCGACCTGCGTGTGCAGCATCTCGCCGGGTATTTCCGCACCCTGCAGGAGACCCTCGCCAGCCAG 
GCCGCCGGCGACGGCGAGACGCCGCTGGTGGTGCTGCTGACTCCCGGACGTTTCAACGAAACCTACTTCGAG 
CATCTCTACCTGGCGCGCCAGCTCGGTTTCCCGCTGGTCGAGGGGCACGACCTGACGGTGCGCGACGCCACC 
CTCTATCTCAAGACCCTCGGCGGCCTGAAACGGGTGCATGCGGTATTGCGGCGCCTCGATGACGACTTCTGC 
GATCCGCTGGAATTGCGTACCGACTCGGCGCTGGGCATTCCCGGCCTGCTCGAGGCGGTACGCCAGGGGCGC 
GTACTGGTGGCCAACGCGTTGGGCAGCGGGGTGCTGGAATCGCCCGGCCTGCTCGGCTTACTGCCGCAGGCC 
TGTCGCCGCCTGCTTGGCGAGGAACTGGCGCTGCCCTCGCTCGACACCCGCTGGTGCGGCGAGCCGCAAGCC 
CTCGAGGCGATACTCGCGGCACTGCCCGACCTGGTGATCAAGCCGGCCTTTCCCGGCCAGCGCTGCGAACCG 
CTGTTCGGCCACGCCCTCGACAGTGCCGGCCTGGCATCCCTCGGCGAGCGCTTGCGCGAGCGCCCGCAGGCC 
TACGTGGCGCAACGCCTGGCGCAGTTGTCCCAGGCACCGGTCTGGCGCGACGGCGAGGCCGGCGTCGGCCTG 
CAGTCGCGGGCCATCGGCATGCGCGTGTTCGCCGTCGCCGCCGCCGACGGACGCTACTGGGTGATGCCCGGC 
GGCCTGACCCGCGTAGCCTCGGCGGCGGATGCCGAGGTGGTGTCGATGCAACGCGGCGGGGCGAGCAAGGAC 
ACCTGGGTGCTGGCCGAGCGAGCAGTCGGCGGCGAGCCGTTGCGACCGCGCCGGCTCGGCGTGCGCGACCTG 
GTCCGCGAGGATCCCTACCTGCCGTCGCGGGTGGTGGAGAACCTGTTCTGGTACGGCCGCTATGCCGAGCGT 
TGCGACGACCATGCGCGCCTGTTGCGGGTGGTGCTGTCGCGCTACGTGGATGCCGATGGCGACGAAGAGGCG 
TTGCGCAGCGCCCTGGCCCTGGCCGGCGGCATCGGCCTGCTGCCCGGGGATGGCGAGCCGTTGGAAAGGTGC 
CTGTTGCGGGCGTTGCTCGACGAGCACTGGCCGGCGAGCCTGTGCGCCAACCTGCGGCGCCTGCACTGGGCG 
GCGGCGCAGGTGCGCGGGCGCTTGTCCGGGGAGAACTGGCTGGCCTTGCTGGAGCTGCAACGCGACATGCAG 
GCGCTCGATCCGGCACGCACCGACCTCGGCGAAGCGCTGGACTTCCTCAACCGGCTAGTGATGTCCCTGGCA 
GCCTTGTCCGGTTTCGCCCTCGACGACATGACCCGCGACGACGGCTGGCGTTTCCTGATGATCGGCCGGCGC 
ATCGAGCGCGTGCGCTTCTTCGCCGAGAGCATCGCCGCCTTCCTCGACGGCGGTAGCGCCTGGGACGCCGGC 
GCGCTGGAATGGCTGCTGGAACTGGGTAACAGCGGCATCACCTACCGCTCGCGCTACCTGGCGTCGCCGCAA 
CTGGTCCCGGTGCTCGACCTGCTCCTGTTGCACGAGCAGAACCCGCACTCGCTGCGCTTCCAGTTGCAGGCC 
CTGGAGCGTTCGCTGGAGCGCCTGCACGAGGAGTTCGGCGCGCCACGCGAGCGGGAACTCAGGACCCTGGGC 
GAACGCCTGCGCAGCTTCGATCTGGCGGCCCTGGAAAGCCCGCTGTTCGGCGCGGCAGGACTCGACGAGGTG 
CTCGTCGGGCTGGCGCGACTGCTGCGCGACATCGCCGCCTGCGCCGGACAGGTCTCCGATCGGCTAGGCTTG 
CGCTATTTCGCCCATGTCGACGATGTCAGCCAGAGAACGGTATCCACCTGA