ViewGene
Locus Name:
GeneID:
Location:

GeneID:1579
TrivialName: PA14_55430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55430
PAO1 Ortholog Locus:PA0687
Sequence Length:1215
Protein Length:404
Start: 4933538
Stop: 4932324
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04076.1|AE004503_14 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 403/404 (99%), Positives = 403/404 (99%)
Sequence:
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGC
CAGCGTGGCGCCCTTGGCCAACTGCGCGCCCGCGGCCTGACCCCGCTGGAGGTCCGCGAACAGGCTGGCGGC
GGGACCGGGCAAGGGGCGGGAGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGC
CAACTGGCCAGCCTGCTGGCCGCCAGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCCGAG
CGCAAGCACATCGCCCAGACCCTGAGCGCCGTGCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCC
CTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGGCGCTGGTGGCTGCGGGCGAGGAGTCCGGCGAC
CTGGCCCAGGTGATGGAGCGCCTGGCCGACTACATCGAGGAACGCAACGCCCTGCGCGGCAAGATCCTCACC
GCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCTCCTCGGCTACGTGGTG
CCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCAGCGCTGACCCGGGCGATGCTCCAGGCC
AGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTC
GTGCTCGGGGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTG
CGCGCGCTCGATGCGGCGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCG
CAGGTTCGCGAAGGTGTCTCGCTGGCCTCGGCGCTGCGCACGCGGCAGGTATTCCCGCCGATCCTCACCCAC
CTGATCGCCAGCGGCGAGAAGACCGGCGCGCTGCCGCCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGC
GACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCGAGCCGCTGATGATCGTGGTCATGGGCGGGGTG
GTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAACCAGCTGGTCCAGTAG
Translation:
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGTGQGAGALFAPRLSDGDLAWATR
QLASLLAASLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGD
LAQVMERLADYIEERNALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQA
SDFVRAWGWLCAGAIGGAYWGWRLYLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLL
RALDAARQTLANDCLAQAVEEATAQVREGVSLASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSR
DIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMNQLVQ*
AnnotationID:1588GeneID:1579
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:PA0687, hxcS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1459, PulF, Type II secretory pathway, component PulF [Cell motility 
and secretion / Intracellular trafficking and secretion]
  CD-Length = 397 residues, 100.0% aligned
  Score =  336 bits (862), Expect = 9e-93






   
Genomic Context:






   
Comment:


















    ReferenceID:3161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20308




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1579
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2803
                           PA0687_tr
                           translation of PA0687
                           404
                           99.75
                           99.75
                           0
                           1995.0
     

     
     
87904
                           gb|AAG04076.1|AE004503_14
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           404
                           99.75
                           99.75
                           0
                           1995.0
     

     
     
87905
                           emb|CAD16825.1|
                           (AL646073) PROBABLE GENERAL SECRETORY PATHWAY F TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           404
                           58.41
                           69.80
                           1
                           1098.0
     

     
     
87908
                           gb|AAD05175.1|
                           (AF110185) general secretory pathway protein F [Burkholderia pseudomallei]
                           405
                           53.08
                           67.90
                           1
                           1015.0
     

     
     
87906
                           gb|AAF36471.2|AF127982_1
                           (AF127982) GspF [Burkholderia cepacia]
                           405
                           52.59
                           68.39
                           1
                           1019.0
     

     






      

          
GC ORFID: 44581How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0687Glimmer Score: 

          
Start: 20369Stop: 21583

          
Length: 1215


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0687 translation of PA0687Homolog Bit Score 773.0

          
Other Homologs:  t_PA3102 (ORF: BLASTX 330.0), t_PA0687 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGACCTTCCGCTACGAAGCCGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGC 
CAGCGTGGCGCCCTTGGCCAACTGCGCGCCCGCGGCCTGACCCCGCTGGAGGTCCGCGAACAGGCTGGCGGC 
GGGACCGGGCAAGGGGCGGGAGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGC 
CAACTGGCCAGCCTGCTGGCCGCCAGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCCGAG 
CGCAAGCACATCGCCCAGACCCTGAGCGCCGTGCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCC 
CTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGGCGCTGGTGGCTGCGGGCGAGGAGTCCGGCGAC 
CTGGCCCAGGTGATGGAGCGCCTGGCCGACTACATCGAGGAACGCAACGCCCTGCGCGGCAAGATCCTCACC 
GCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCTCCTCGGCTACGTGGTG 
CCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCAGCGCTGACCCGGGCGATGCTCCAGGCC 
AGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG 
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTC 
GTGCTCGGGGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTG 
CGCGCGCTCGATGCGGCGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCG 
CAGGTTCGCGAAGGTGTCTCGCTGGCCTCGGCGCTGCGCACGCGGCAGGTATTCCCGCCGATCCTCACCCAC 
CTGATCGCCAGCGGCGAGAAGACCGGCGCGCTGCCGCCGATGCTCGACCGCGCGGCGCAGACCCTGTCGCGC 
GACATCGAGCGCCGCGCCATGGGCATGACCGCGCTGCTCGAGCCGCTGATGATCGTGGTCATGGGCGGGGTG 
GTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAACCAGCTGGTCCAGTAG