ViewGene
Locus Name:
GeneID:
Location:

GeneID:1577
TrivialName: PA14_14940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14940
PAO1 Ortholog Locus:PA3798
Sequence Length:1149
Protein Length:382
Start: 1269092
Stop: 1270240
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07185.1|AE004798_8 (AE004798) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 380/382 (99%), Positives = 382/382 (100%)
Sequence:
ATGATTCAGAGCAAGCTGCCGAATGTCGGCACCACCATCTTCACCCGCATGTCGCAACTGGCCGCCGAGTGT
GGCGCGATCAACCTCTCCCAGGGCTTTCCCGATTTCGACGGTCCGCCGGAGCTGCGCGAGGCGGTAGGCCGG
CATATCGCCGCCGGGCACAACCAGTACGCGCCGATGACCGGCTTGCCGGCCCTGCGCGAGCAGGTGGCGAAG
AAGATCGAGCAGTTCTATGGACGCCGGGTGAGCGCCGACAGCGAGGTGACCATCACGCCGGGGGCGACCGAG
GCGATCTTCAGCGCGATCCAGGCGCTGGTCCATCCGGGCGACGAAGTGGTGGTACTCGACCCGTCCTACGAC
AGCTACGAACCCTCCGTGCAACTCGCCGGCGGGCGTTGCGTGCACGTGCCGCTGGCGCTGCCGGACTTCTCC
ATCGACTGGCAGCGCATGGCCGAGGCCATCGGGCCGCGTACCCGGCTGGTCATCATCAATACCCCGCACAAC
CCCAGCGGCGCGCTGATCAGCCGCGAGGAACTGGACCGCCTGGCCGCGTTGATCCGCGACCGGGATATCTAC
CTGATCAGCGACGAGGTCTACGAGCACCTGGTGTTCGACGGTGTCGCCCATACCAGCGTGCTGTCCCACGAG
GAGTTGTATCCGCGCTCCTTCGTGGTCAGCTCGTTCGGCAAGACCTACCACGTCACCGGCTGGAAGACCGGC
TACGTGGTCGCGCCGCCTGCGCTCAGCGCGGAGCTGCGCAAGGTCCACCAGTACGTCAACTTCTGTGGCGTC
ACGCCGCTGCAATGGGCATTGGCGGACTACATGGCCGGCCATCCCGAACATTTGCGGCAATTGCCCGGTTTC
TACCAGGCCAAGCGCGACCTGTTCTGCGACCTGCTGTTGGACTCTCGCTTCCGTTTCACCCGTGCGCCGGGC
ACCTACTTCCAGTGCGTGGACTATTCGGCCGTCCGTCCGGACCTGGACGACGTGGCCATGGCCGAGTGGCTG
ACCCGCGAACACGGAGTGGCGGCGATCCCGGTTTCGGTGTTTTATGAAAAGGCGCCGGACGCCATGCGGCTG
GTCCGGTTCTGTTACGCCAAACGCGAGGAGACGCTGCGTCAGGCAGCGGAAAAGCTATGCGCGATCTGA
Translation:
MIQSKLPNVGTTIFTRMSQLAAECGAINLSQGFPDFDGPPELREAVGRHIAAGHNQYAPMTGLPALREQVAK
KIEQFYGRRVSADSEVTITPGATEAIFSAIQALVHPGDEVVVLDPSYDSYEPSVQLAGGRCVHVPLALPDFS
IDWQRMAEAIGPRTRLVIINTPHNPSGALISREELDRLAALIRDRDIYLISDEVYEHLVFDGVAHTSVLSHE
ELYPRSFVVSSFGKTYHVTGWKTGYVVAPPALSAELRKVHQYVNFCGVTPLQWALADYMAGHPEHLRQLPGF
YQAKRDLFCDLLLDSRFRFTRAPGTYFQCVDYSAVRPDLDDVAMAEWLTREHGVAAIPVSVFYEKAPDAMRL
VRFCYAKREETLRQAAEKLCAI*
AnnotationID:1586GeneID:1577
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 10:10:45
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:ybdL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0436,KOG0257
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54961.1| (AE016860) aminotransferase, classes I and II [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 382

 Score =  606 bits (1562), Expect = e-173
 Identities = 286/382 (74%), Positives = 331/382 (86%)

>gb|AAN79163.1|AE016757_67 (AE016757) Hypothetical aminotransferase ybdL [Escherichia coli
           CFT073]
          Length = 386

 Score =  412 bits (1060), Expect = e-114
 Identities = 210/377 (55%), Positives = 259/377 (68%), Gaps = 2/377 (0%)






 
Structural Features:
COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  93.6% aligned
Score =  340 bits (874), Expect = 3e-94
Identities = 143/373 (38%), Positives = 205/373 (54%), Gaps = 12/373 (3%)

KOG0257, Kynurenine aminotransferase, glutamine transaminase K 
[Amino acid transport and metabolism]
CD-Length = 420 residues,  94.5% aligned
Score =  332 bits (852), Expect = 1e-91
Identities = 157/397 (39%), Positives = 215/397 (54%), Gaps = 28/397 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20304




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31761




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1577_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1577
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2801
                           PA3798_tr
                           translation of PA3798
                           382
                           99.47
                           99.99
                           0
                           1999.0
     

     
     
87677
                           gb|AAG07185.1|AE004798_8
                           (AE004798) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           382
                           99.47
                           99.99
                           0
                           1999.0
     

     
     
87678
                           gb|AAN66483.1|AE016277_2
                           (AE016777) aminotransferase, class I [Pseudomonas putida KT2440]
                           382
                           77.74
                           88.21
                           0
                           1599.0
     

     
     
87679
                           gb|AAO54961.1|
                           (AE016860) aminotransferase, classes I and II [Pseudomonas syringae pv. tomato str. DC3000]
                           382
                           74.86
                           86.64
                           0
                           1562.0
     

     
     
87680
                           gb|AAM41498.1|
                           (AE012329) succinyldiaminopimelate transaminase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           383
                           56.91
                           70.23
                           2
                           1112.0
     

     






      

          
GC ORFID: 44579How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3798Glimmer Score: 

          
Start: 3684846Stop: 3683698

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3798 translation of PA3798Homolog Bit Score 774.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4533 (ORF: BLASTX 607.0), t_PA3798 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCAGAGCAAGCTGCCGAATGTCGGCACCACCATCTTCACCCGCATGTCGCAACTGGCCGCCGAGTGT 
GGCGCGATCAACCTCTCCCAGGGCTTTCCCGATTTCGACGGTCCGCCGGAGCTGCGCGAGGCGGTAGGCCGG 
CATATCGCCGCCGGGCACAACCAGTACGCGCCGATGACCGGCTTGCCGGCCCTGCGCGAGCAGGTGGCGAAG 
AAGATCGAGCAGTTCTATGGACGCCGGGTGAGCGCCGACAGCGAGGTGACCATCACGCCGGGGGCGACCGAG 
GCGATCTTCAGCGCGATCCAGGCGCTGGTCCATCCGGGCGACGAAGTGGTGGTACTCGACCCGTCCTACGAC 
AGCTACGAACCCTCCGTGCAACTCGCCGGCGGGCGTTGCGTGCACGTGCCGCTGGCGCTGCCGGACTTCTCC 
ATCGACTGGCAGCGCATGGCCGAGGCCATCGGGCCGCGTACCCGGCTGGTCATCATCAATACCCCGCACAAC 
CCCAGCGGCGCGCTGATCAGCCGCGAGGAACTGGACCGCCTGGCCGCGTTGATCCGCGACCGGGATATCTAC 
CTGATCAGCGACGAGGTCTACGAGCACCTGGTGTTCGACGGTGTCGCCCATACCAGCGTGCTGTCCCACGAG 
GAGTTGTATCCGCGCTCCTTCGTGGTCAGCTCGTTCGGCAAGACCTACCACGTCACCGGCTGGAAGACCGGC 
TACGTGGTCGCGCCGCCTGCGCTCAGCGCGGAGCTGCGCAAGGTCCACCAGTACGTCAACTTCTGTGGCGTC 
ACGCCGCTGCAATGGGCATTGGCGGACTACATGGCCGGCCATCCCGAACATTTGCGGCAATTGCCCGGTTTC 
TACCAGGCCAAGCGCGACCTGTTCTGCGACCTGCTGTTGGACTCTCGCTTCCGTTTCACCCGTGCGCCGGGC 
ACCTACTTCCAGTGCGTGGACTATTCGGCCGTCCGTCCGGACCTGGACGACGTGGCCATGGCCGAGTGGCTG 
ACCCGCGAACACGGAGTGGCGGCGATCCCGGTTTCGGTGTTTTATGAAAAGGCGCCGGACGCCATGCGGCTG 
GTCCGGTTCTGTTACGCCAAACGCGAGGAGACGCTGCGTCAGGCAGCGGAAAAGCTATGCGCGATCTGA