ViewGene
Locus Name:
GeneID:
Location:

GeneID:1575
TrivialName: PA14_50010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50010
PAO1 Ortholog Locus:PA1112
Sequence Length:1149
Protein Length:382
Start: 4446298
Stop: 4445150
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04501.1|AE004541_6 (AE004541) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 377/382 (98%), Positives = 380/382 (99%)
Sequence:
ATGCCGGGCCTGTCTTTGAATGCCATCCTGCTGAGCGCCGCCGCGCTGCTCGCCCCGTCGGCCGAGGCGGTG
GACGCCGGTCGCCACGACAGCGAGCTGGGCGCCGTCGAGGTCACCCCGGTGGTTGGCGGTCTGGCCTATCCC
TGGGCCGTCGCCTTCCTGCCGGACAACCAGGGCATGTTGGTCACCGAGCGGCCCGGCAGCTTGCGTTTCGTC
AGTCCCGAGGGACAGTTGTCGGCGCCGCTGGAAGGCGTACCCAGGGTCTTCGCCAGCGGCCAGGGGGGCCTG
CTCGACGTCGCCTTGTCGCCGGGGTTCGCCGAGGACCGGCTGGTCTACCTGACCTATGCCGAGGCCGGCGAG
GACGGCCGCGCCGGAACGGCGGCGGGACGCGGCCGGTTATCGGCGGACAAGCGACGGCTGGAGGGTTTCCAC
GTGATCTTCCGGCAGTTGCCGAAGCTTTCCAGCGGCCATCACTTCGGCTCGCGCCTGGTCTTCGACGGCAAG
GGCCACCTGTTCATCGCCCTCGGCGAGAACAACCAGCGCAGCACCTCGCAGGACCTGGACAAGTTGCAGGGC
AAGATCGTCCGCCTGTATCCGGACGGCGGCGTTCCCAAGGACAATCCCTTCGTCGGCCGTGCCGACGCGCGG
CCGGAGATCTGGAGCTATGGCCACCGCAACCAGCAGGGCGCCGCGTTGAATCCCTGGACCGGCCGGCTCTGG
ACCCACGAGCACGGCCCGCGCGGCGGCGACGAGATCAACATACCCCAGGCCGGCGGGAACTACGGCTGGCCG
CTGGCGACCCATGGAATCAACTACACCCTGCTGCCGATCCCCGAAGCCAGGGGCAAGGCCGTCGACGGTACC
GAGGCGCCGCACCATGTCTGGGAGAAGTCGCCGGCGATCAGCGGCATGGCGTTCTACGATGCGCAGCGCTTC
CCGGCCTGGCAGCACAACCTGTTCATCGGCGCGCTGGCGACGCAGGAACTGATCCGCCTGCAACTGGATGGC
GACCGGGTCGTCCACGAAGAGCGCCTGCTGGGCGATCTCGGGGTGCGCATCCGCGACGTGCGGCAGGGCCCG
GACGGCTATCTCTACCTGCTCACCGACCAGAAGGACGGGCAATTGCTGCGCCTGGGGTTGGCGCGCTAG
Translation:
MPGLSLNAILLSAAALLAPSAEAVDAGRHDSELGAVEVTPVVGGLAYPWAVAFLPDNQGMLVTERPGSLRFV
SPEGQLSAPLEGVPRVFASGQGGLLDVALSPGFAEDRLVYLTYAEAGEDGRAGTAAGRGRLSADKRRLEGFH
VIFRQLPKLSSGHHFGSRLVFDGKGHLFIALGENNQRSTSQDLDKLQGKIVRLYPDGGVPKDNPFVGRADAR
PEIWSYGHRNQQGAALNPWTGRLWTHEHGPRGGDEINIPQAGGNYGWPLATHGINYTLLPIPEARGKAVDGT
EAPHHVWEKSPAISGMAFYDAQRFPAWQHNLFIGALATQELIRLQLDGDRVVHEERLLGDLGVRIRDVRQGP
DGYLYLLTDQKDGQLLRLGLAR*
AnnotationID:1584GeneID:1575
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 13:01:55
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase
Cell Localization:()
Synonyms:PA1112, yliI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2133
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
             CD-Length = 399 residues,  95.0% aligned
             Score =  353 bits (906), Expect = 3e-98






   
Genomic Context:






   
Comment:


















    ReferenceID:3153




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20300




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1575
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2799
                           PA1112_tr
                           translation of PA1112
                           382
                           98.69
                           99.47
                           0
                           1999.0
     

     
     
87646
                           gb|AAG04501.1|AE004541_6
                           (AE004541) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           382
                           98.69
                           99.47
                           0
                           1999.0
     

     
     
87647
                           dbj|BAC81751.1|
                           (AB079768) hydrophobic compound transport factor [Pseudomonas aeruginosa]
                           382
                           98.69
                           99.21
                           0
                           1996.0
     

     
     
87648
                           gb|AAN67811.1|AE016412_4
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           385
                           70.90
                           80.00
                           7
                           1429.0
     

     
     
87649
                           gb|AAO55128.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           387
                           66.40
                           77.77
                           5
                           1350.0
     

     






      

          
GC ORFID: 44577How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1112Glimmer Score: 

          
Start: 507610Stop: 508758

          
Length: 1149


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1112 translation of PA1112Homolog Bit Score 774.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6375 (ORF: BLASTX 531.0), t_PA1112 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGGCCTGTCTTTGAATGCCATCCTGCTGAGCGCCGCCGCGCTGCTCGCCCCGTCGGCCGAGGCGGTG 
GACGCCGGTCGCCACGACAGCGAGCTGGGCGCCGTCGAGGTCACCCCGGTGGTTGGCGGTCTGGCCTATCCC 
TGGGCCGTCGCCTTCCTGCCGGACAACCAGGGCATGTTGGTCACCGAGCGGCCCGGCAGCTTGCGTTTCGTC 
AGTCCCGAGGGACAGTTGTCGGCGCCGCTGGAAGGCGTACCCAGGGTCTTCGCCAGCGGCCAGGGGGGCCTG 
CTCGACGTCGCCTTGTCGCCGGGGTTCGCCGAGGACCGGCTGGTCTACCTGACCTATGCCGAGGCCGGCGAG 
GACGGCCGCGCCGGAACGGCGGCGGGACGCGGCCGGTTATCGGCGGACAAGCGACGGCTGGAGGGTTTCCAC 
GTGATCTTCCGGCAGTTGCCGAAGCTTTCCAGCGGCCATCACTTCGGCTCGCGCCTGGTCTTCGACGGCAAG 
GGCCACCTGTTCATCGCCCTCGGCGAGAACAACCAGCGCAGCACCTCGCAGGACCTGGACAAGTTGCAGGGC 
AAGATCGTCCGCCTGTATCCGGACGGCGGCGTTCCCAAGGACAATCCCTTCGTCGGCCGTGCCGACGCGCGG 
CCGGAGATCTGGAGCTATGGCCACCGCAACCAGCAGGGCGCCGCGTTGAATCCCTGGACCGGCCGGCTCTGG 
ACCCACGAGCACGGCCCGCGCGGCGGCGACGAGATCAACATACCCCAGGCCGGCGGGAACTACGGCTGGCCG 
CTGGCGACCCATGGAATCAACTACACCCTGCTGCCGATCCCCGAAGCCAGGGGCAAGGCCGTCGACGGTACC 
GAGGCGCCGCACCATGTCTGGGAGAAGTCGCCGGCGATCAGCGGCATGGCGTTCTACGATGCGCAGCGCTTC 
CCGGCCTGGCAGCACAACCTGTTCATCGGCGCGCTGGCGACGCAGGAACTGATCCGCCTGCAACTGGATGGC 
GACCGGGTCGTCCACGAAGAGCGCCTGCTGGGCGATCTCGGGGTGCGCATCCGCGACGTGCGGCAGGGCCCG 
GACGGCTATCTCTACCTGCTCACCGACCAGAAGGACGGGCAATTGCTGCGCCTGGGGTTGGCGCGCTAG