ViewGene
Locus Name:
GeneID:
Location:

GeneID:1573
TrivialName: PA14_05040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05040
PAO1 Ortholog Locus:PA0386
Sequence Length:1155
Protein Length:384
Start: 443476
Stop: 442322
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03775.1|AE004476_5 (AE004476) probable oxidase [Pseudomonas aeruginosa PAO1]
Identities = 380/384 (98%), Positives = 380/384 (98%)
Sequence:
GTGACCCAAGCCACCCCGTTCCAGCTCCCGCCCCTGGCCCTGTACGTGCACATCCCGTGGTGCGTGCGCAAG
TGCCCGTATTGCGACTTCAACTCCCACGCCGCTGGCACGGAGCTGCCCGAAGAGGCCTATGTCGACGCCCTG
CTCGCCGACCTGGAGCAAGACCTGCGCCATGTCCACGGCCGGCGCCTGGGTTCGATCTTCTTCGGCGGCGGC
ACGCCCAGCCTGTTCTCGGCCAAGGCCCTGGGCCGGCTACTGGAAGGCGTCGAGCGCAGGGTCGGCTTCGCC
GACGGCATCGAGATCACCCTGGAAGCCAATCCCGGCACCTTCGAACAGGTCAAGTTCGCCGACTACCGGCGC
CTCGGCATCAATCGCCTGTCCATCGGCGTGCAGAGCTTCCAGGCCGACAAGCTGCAGGCTCTGGGGCGCATC
CACGACGGCGCCGAGGCAGTGCGCGCCGCCGACATGGCGCGCCAGGCCGGCTTCGACAACTTCAACCTCGAC
CTGATGCACGGCCTGCCCGGGCAGAGCCTCGACGACGCCCTGGCCGACCTGCGCCAGGCCCTCGCCCTGGCC
CCCACGCACCTCTCCTGGTACCAACTGACCATGGAGCCGAACACGGTGTTCTGGAGCCAGCCGCCGGAGCTG
CCCGAGGACGACATCCTCTGGGACATCCAGGAAGCCGGCCAGGCCCTGCTCGACGCGCACGGCTACCGCCAG
TACGAGACCTCCGCCTACGCCCGCGACGACCTGCGCGCCCGGCACAACCTGAACTACTGGAGCTTCGGCGAC
TTCCTCGGCATCGGCGCCGGCGCCCACGCCAAGCTGAGCGCGCCGGACGGACGCATCGTGCGGACCTGGAAG
ACCCGCCTGCCGAAGGACTACCTCAACCCGCAAAAGGCCTTCCAGGCCGGCGAGCGCCCGCTGGAAGCGGCC
GACCTGCCATTCGAATTCATGATGAACGTGCTGCGACTGGTCGACGGCGTCCCCGCCGCGCTCTACCCGCAG
CGCACCGGCCAACCGCTGGCGGCGATCGCCGATGCCTGCGCCGCCGCGCGCGACGCCGGGCTGCTCGCCGAC
GACCCGCAGCGCCTGCGTCCCAGCGAACGCGGCCAGCTGTTCCTCAACGACCTGCTGCAACATTTCCTGCCG
TGA
Translation:
MTQATPFQLPPLALYVHIPWCVRKCPYCDFNSHAAGTELPEEAYVDALLADLEQDLRHVHGRRLGSIFFGGG
TPSLFSAKALGRLLEGVERRVGFADGIEITLEANPGTFEQVKFADYRRLGINRLSIGVQSFQADKLQALGRI
HDGAEAVRAADMARQAGFDNFNLDLMHGLPGQSLDDALADLRQALALAPTHLSWYQLTMEPNTVFWSQPPEL
PEDDILWDIQEAGQALLDAHGYRQYETSAYARDDLRARHNLNYWSFGDFLGIGAGAHAKLSAPDGRIVRTWK
TRLPKDYLNPQKAFQAGERPLEAADLPFEFMMNVLRLVDGVPAALYPQRTGQPLAAIADACAAARDAGLLAD
DPQRLRPSERGQLFLNDLLQHFLP*
AnnotationID:1582GeneID:1573
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:28
Gene Name:
Confidence Code:3
GeneProduct:putative oxygen-independent coproporphyrinogen III oxidase
Cell Localization:()
Synonyms:PA0386
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0635
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58480.1| (AE016874) oxygen-independent coproporphyrinogen III oxidase,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 404

 Score =  576 bits (1484), Expect = e-164
 Identities = 280/375 (74%), Positives = 313/375 (83%)

gb|AAN70666.1|AE016710_11 (AE016793) oxygen-independent coproporphyrinogen III oxidase,
           putative [Pseudomonas putida KT2440]
          Length = 391

 Score =  576 bits (1484), Expect = e-164
 Identities = 283/375 (75%), Positives = 312/375 (83%)








 
Structural Features:
COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
[Coenzyme metabolism]
CD-Length = 416 residues,  90.6% aligned
Score =  398 bits (1023), Expect = 7e-112
Identities = 167/383 (43%), Positives = 221/383 (57%), Gaps = 16/383 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20296




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33713




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1573_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1573
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2797
                           PA0386_tr
                           translation of PA0386
                           384
                           98.95
                           98.95
                           0
                           2002.0
     

     
     
87578
                           gb|AAG03775.1|AE004476_5
                           (AE004476) probable oxidase [Pseudomonas aeruginosa PAO1]
                           384
                           98.69
                           98.95
                           0
                           1999.0
     

     
     
87580
                           gb|AAN70666.1|AE016710_11
                           (AE016793) oxygen-independent coproporphyrinogen III oxidase, putative [Pseudomonas putida KT2440]
                           391
                           72.63
                           80.56
                           7
                           1477.0
     

     
     
87579
                           gb|AAO58480.1|
                           (AE016874) oxygen-independent coproporphyrinogen III oxidase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           404
                           69.80
                           78.21
                           20
                           1477.0
     

     
     
87604
                           gb|AAQ58601.1|
                           (AE016913) probable porphyrin oxidoreductase [Chromobacterium violaceum ATCC 12472]
                           402
                           54.72
                           66.41
                           24
                           1030.0
     

     






      

          
GC ORFID: 44575How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0386Glimmer Score: 

          
Start: 6244818Stop: 6243664

          
Length: 1155


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0386 translation of PA0386Homolog Bit Score 775.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3724 (ORF: BLASTX 585.0), t_PA0386 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACCCAAGCCACCCCGTTCCAGCTCCCGCCCCTGGCCCTGTACGTGCACATCCCGTGGTGCGTGCGCAAG 
TGCCCGTATTGCGACTTCAACTCCCACGCCGCTGGCACGGAGCTGCCCGAAGAGGCCTATGTCGACGCCCTG 
CTCGCCGACCTGGAGCAAGACCTGCGCCATGTCCACGGCCGGCGCCTGGGTTCGATCTTCTTCGGCGGCGGC 
ACGCCCAGCCTGTTCTCGGCCAAGGCCCTGGGCCGGCTACTGGAAGGCGTCGAGCGCAGGGTCGGCTTCGCC 
GACGGCATCGAGATCACCCTGGAAGCCAATCCCGGCACCTTCGAACAGGTCAAGTTCGCCGACTACCGGCGC 
CTCGGCATCAATCGCCTGTCCATCGGCGTGCAGAGCTTCCAGGCCGACAAGCTGCAGGCTCTGGGGCGCATC 
CACGACGGCGCCGAGGCAGTGCGCGCCGCCGACATGGCGCGCCAGGCCGGCTTCGACAACTTCAACCTCGAC 
CTGATGCACGGCCTGCCCGGGCAGAGCCTCGACGACGCCCTGGCCGACCTGCGCCAGGCCCTCGCCCTGGCC 
CCCACGCACCTCTCCTGGTACCAACTGACCATGGAGCCGAACACGGTGTTCTGGAGCCAGCCGCCGGAGCTG 
CCCGAGGACGACATCCTCTGGGACATCCAGGAAGCCGGCCAGGCCCTGCTCGACGCGCACGGCTACCGCCAG 
TACGAGACCTCCGCCTACGCCCGCGACGACCTGCGCGCCCGGCACAACCTGAACTACTGGAGCTTCGGCGAC 
TTCCTCGGCATCGGCGCCGGCGCCCACGCCAAGCTGAGCGCGCCGGACGGACGCATCGTGCGGACCTGGAAG 
ACCCGCCTGCCGAAGGACTACCTCAACCCGCAAAAGGCCTTCCAGGCCGGCGAGCGCCCGCTGGAAGCGGCC 
GACCTGCCATTCGAATTCATGATGAACGTGCTGCGACTGGTCGACGGCGTCCCCGCCGCGCTCTACCCGCAG 
CGCACCGGCCAACCGCTGGCGGCGATCGCCGATGCCTGCGCCGCCGCGCGCGACGCCGGGCTGCTCGCCGAC 
GACCCGCAGCGCCTGCGTCCCAGCGAACGCGGCCAGCTGTTCCTCAACGACCTGCTGCAACATTTCCTGCCG 
TGA