ViewGene
Locus Name:
GeneID:
Location:

GeneID:1572
TrivialName: PA14_65820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65820
PAO1 Ortholog Locus:PA4979
Sequence Length:1161
Protein Length:386
Start: 5864009
Stop: 5862849
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08364.1|AE004910_11 (AE004910) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 384/386 (99%), Positives = 386/386 (100%)
Sequence:
ATGGATTTCAGGCTGACCCAGGAACAGGACATGCTGGTCGAGGCGGTGCGCAGCTTCGTCGAGAAGGAACTG
CTGCCCCACGAGGACGATGTCGACCGCGCCGACGCGGTGTCGCCGGAGCTGGCCGCACAGATTCGCGGCAAG
GCCCTCGCGGCCGGTTTCTATGCCTTCAACATGCCCGAGGAAGTGGGCGGCGGCGGCCTCGACTACCTGTCC
CAGGCGCTGGTCGAACGCGAGCTGTCGAAGGTCTCCTGGGCCCTCCACGTATTCGTCGCGCGGCCCTCGAAG
ATCCTCATGGCCTGCACCGGAGAACAGCTCGGCGACTACCTGTTGCCCTGCGTGCAGGGCGAAAAGACCGAT
TGCTTCGCCCTCACCGAGCCGGGTGCCGGCTCCGACGCCAATTCGATCAAGACCCGCGCGGTGCGCGACGGC
GACGCCTTCGTGATCAACGGCAGCAAGCACTTCATCAGCCACGCCGGGCACGCCGACTTCGCCATCGTCTTC
GCCGTCACCGACAGCTACGAGCACAACGGCCGCAAGCGCAACGCGGTGACCGCCTTCCTGGTGGACAAGGGC
ACGCCCGGGATGACCGTGCGCCGCGGGCCGAAATGCGTGAGCAACCGTGGCTACCACACTTACGAGATCTTC
TTCGACGATTGCCGGGTGCCGGCCTCCAAGGTACTCGGCGAGGTCGGCAAGGGCTGGGAAGTGGCCAACGCC
TGGCTCACCGCCGGACGGGTGATGGTCGCCGCCAACTGCGTCGGCCAGGCCCAGCGCGCCCTCGACCTATCA
CTGCGCTGGGCGGCCGATCGCAAGCAGTTCGGCCAGCCGATCGGCAGCTACCAGGGCGTTTCCTTCAAGCTC
GCCGACATGGCCACGCAGATCCGCGCCGCCGAGCTGATGACCCTGCACACCGCCTGGAAGATGGACCAGGGC
ACCATGACCGACGGCGAGGCCGGCATGGCCAAGCTGTTCGCCAGCGAGACCCTCGGCAAGGTCGCCGACGAA
GCGGTGCAGATCTTCGGCGGCATGGGCCTGATGGATGAAGGACCGGTCGAGCGCATCTGGCGCAACGCGCGG
ATCGAGCGGATCTGGGAGGGCACTTCGGAAATCCAGCGGCACATCGTTTCCCGCGAACTGCTGCGGCCGTTG
CTGCGTTGA
Translation:
MDFRLTQEQDMLVEAVRSFVEKELLPHEDDVDRADAVSPELAAQIRGKALAAGFYAFNMPEEVGGGGLDYLS
QALVERELSKVSWALHVFVARPSKILMACTGEQLGDYLLPCVQGEKTDCFALTEPGAGSDANSIKTRAVRDG
DAFVINGSKHFISHAGHADFAIVFAVTDSYEHNGRKRNAVTAFLVDKGTPGMTVRRGPKCVSNRGYHTYEIF
FDDCRVPASKVLGEVGKGWEVANAWLTAGRVMVAANCVGQAQRALDLSLRWAADRKQFGQPIGSYQGVSFKL
ADMATQIRAAELMTLHTAWKMDQGTMTDGEAGMAKLFASETLGKVADEAVQIFGGMGLMDEGPVERIWRNAR
IERIWEGTSEIQRHIVSRELLRPLLR*
AnnotationID:1581GeneID:1572
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA4979
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01158,cd00567,cd01156,cd01160
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69321.1|AE016569_5 (AE016788) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 386

 Score =  730 bits (1884), Expect = 0.0
 Identities = 357/386 (92%), Positives = 374/386 (96%)

>dbj|BAB51559.1| (AP003005) acyl-CoA dehydrogenase [Mesorhizobium loti]
          Length = 387

 Score =  453 bits (1166), Expect = e-127
 Identities = 227/384 (59%), Positives = 288/384 (75%), Gaps = 1/384 (0%)

>emb|CAC46830.1| (AL591790) PUTATIVE ACYL-COA DEHYDROGENASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 386

 Score =  434 bits (1116), Expect = e-121
 Identities = 215/384 (55%), Positives = 280/384 (72%)






 
Structural Features:
cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues, 100.0% aligned
Score =  365 bits (939), Expect = 4e-102

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  99.7% aligned
Score =  331 bits (851), Expect = 6e-92

cd01156, IVD, Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, 
which catalyzes the third step in leucine catabolism, the conversion of 
isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA.
CD-Length = 376 residues,  99.7% aligned
Score =  274 bits (701), Expect = 2e-74

cd01160, LCAD, Long chain acyl-CoA dehydrogenase (LCAD) is acyl-CoA dehydrogenases (ACAD)
CD-Length = 372 residues, 100.0% aligned
Score =  271 bits (694), Expect = 1e-73






   
Genomic Context:






   
Comment:


















    ReferenceID:3147




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20294




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35108




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1572_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1572
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2796
                           PA4979_tr
                           translation of PA4979
                           386
                           99.48
                           99.99
                           0
                           2002.0
     

     
     
87541
                           gb|AAG08364.1|AE004910_11
                           (AE004910) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           386
                           99.48
                           99.99
                           0
                           2002.0
     

     
     
87542
                           gb|AAN69321.1|AE016569_5
                           (AE016788) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           386
                           92.48
                           96.89
                           0
                           1884.0
     

     
     
87543
                           dbj|BAB51559.1|
                           (AP003005) acyl-CoA dehydrogenase [Mesorhizobium loti]
                           387
                           58.65
                           74.41
                           1
                           1163.0
     

     
     
87544
                           emb|CAC46830.1|
                           (AL591790) PUTATIVE ACYL-COA DEHYDROGENASE PROTEIN [Sinorhizobium meliloti]
                           386
                           55.69
                           72.53
                           0
                           1111.0
     

     






      

          
GC ORFID: 44574How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4979Glimmer Score: 

          
Start: 5127692Stop: 5126532

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4979 translation of PA4979Homolog Bit Score 775.0

          
Other Homologs:  t_PA4979 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTTCAGGCTGACCCAGGAACAGGACATGCTGGTCGAGGCGGTGCGCAGCTTCGTCGAGAAGGAACTG 
CTGCCCCACGAGGACGATGTCGACCGCGCCGACGCGGTGTCGCCGGAGCTGGCCGCACAGATTCGCGGCAAG 
GCCCTCGCGGCCGGTTTCTATGCCTTCAACATGCCCGAGGAAGTGGGCGGCGGCGGCCTCGACTACCTGTCC 
CAGGCGCTGGTCGAACGCGAGCTGTCGAAGGTCTCCTGGGCCCTCCACGTATTCGTCGCGCGGCCCTCGAAG 
ATCCTCATGGCCTGCACCGGAGAACAGCTCGGCGACTACCTGTTGCCCTGCGTGCAGGGCGAAAAGACCGAT 
TGCTTCGCCCTCACCGAGCCGGGTGCCGGCTCCGACGCCAATTCGATCAAGACCCGCGCGGTGCGCGACGGC 
GACGCCTTCGTGATCAACGGCAGCAAGCACTTCATCAGCCACGCCGGGCACGCCGACTTCGCCATCGTCTTC 
GCCGTCACCGACAGCTACGAGCACAACGGCCGCAAGCGCAACGCGGTGACCGCCTTCCTGGTGGACAAGGGC 
ACGCCCGGGATGACCGTGCGCCGCGGGCCGAAATGCGTGAGCAACCGTGGCTACCACACTTACGAGATCTTC 
TTCGACGATTGCCGGGTGCCGGCCTCCAAGGTACTCGGCGAGGTCGGCAAGGGCTGGGAAGTGGCCAACGCC 
TGGCTCACCGCCGGACGGGTGATGGTCGCCGCCAACTGCGTCGGCCAGGCCCAGCGCGCCCTCGACCTATCA 
CTGCGCTGGGCGGCCGATCGCAAGCAGTTCGGCCAGCCGATCGGCAGCTACCAGGGCGTTTCCTTCAAGCTC 
GCCGACATGGCCACGCAGATCCGCGCCGCCGAGCTGATGACCCTGCACACCGCCTGGAAGATGGACCAGGGC 
ACCATGACCGACGGCGAGGCCGGCATGGCCAAGCTGTTCGCCAGCGAGACCCTCGGCAAGGTCGCCGACGAA 
GCGGTGCAGATCTTCGGCGGCATGGGCCTGATGGATGAAGGACCGGTCGAGCGCATCTGGCGCAACGCGCGG 
ATCGAGCGGATCTGGGAGGGCACTTCGGAAATCCAGCGGCACATCGTTTCCCGCGAACTGCTGCGGCCGTTG 
CTGCGTTGA