ViewGene
Locus Name:
GeneID:
Location:

GeneID:1570
TrivialName: PA14_20820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20820
PAO1 Ortholog Locus:PA3343
Sequence Length:1170
Protein Length:389
Start: 1792303
Stop: 1793472
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06731.1|AE004756_9 (AE004756) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 389/389 (100%), Positives = 389/389 (100%)
Sequence:
GTGTGCGTGACACAGAAGGACCGGTTGGACGACTCCCGTTCCAACCTCTATGCGGACCAATTGAACCGCGGT
TTCCGCGGCCTGCGTTTCCTTCCCGAACTGGAGCGTGACTACCGGCGCTACATGCTGGAGGACAGCTTCGCG
CTGAAACGCATCGCCCTCAGCGTCGGCATGCTCGTCTGGCTGGCGTTCATCGGCATCGACCTGCTGATCCTC
GCTGGTCCTCCGCTGTGGGGCGTACTGGCGGTGCGCCTTGGCGTGCTGGTCCTGCTACTGGTCTGCGGCTGC
CTGATCATGCTGCGCCGGCACATCCAGCTGATGGTGCCGCTGAGCATCGCCTGCGTCCTCGCCCTTGGCGTC
GGTGCGGCGGCGGTGGTCGGCCTGGCGCATCGGGCGGATCCCGGCTATCCCTACGAAGGCCTGCTGCTGGTC
AGTTTCGCCGCCTATTTCCTCGCCGGCCTGCGGTTGTCGCAGGCATTGAGCTGTGCGTTGGTCGTGCTGCTC
GCCTACCTGGGTTTCGAGTGGTGGGCGGGTACCCAGGAGCCGCTGGGCAACAACCTGCTGTTCCTGCTGTTC
GGTAACCTGATCGGCGCGGTCGGCTGCTACCTGCTGGAGTTCAAGTCGCGCGAGCATTTCCTCATCAGCCGC
CTGTTGCGGGTGATGGCCGACCACGACAGCCTGACCGGCCTGCACAACCGGCGCAGCTTCAACCAGCACCTG
GACCGCCTCTGGCGCCAGGCCCAGCGCGAACAGAAGACCCTGGCGCTGCTGCTTTGCGACGTCGACCATTTC
AAGGCCTATAACGACCGCTACGGACACCAGGCTGGCGATGCGGTCCTGCAGCGCATCGGCGCGGTGTTCGAG
GCGAATGCCAGGCGTCCGCTGGACATGGCGGTGCGCCTGGGCGGCGAAGAGTTCGCCCTGTTGCTGTACGGC
GCCAACGAGCACGAGGCGAGGCTGCGCGCGGAAGCGCTGCGCGCACAGGTCCAGGCGCTGCGCATGGAGCAC
GAGGCGTCGGACACGGCGCGCGAAGTGACCCTGTCGGTCGGCGTGTCCTGCCTGTGGCCGACCCCGGGCAAC
GACCTGAAGCGCCTCTACGATCTCTACGAGCATGCCGATCGCGCGCTTTACGAAGCCAAGGCATTCGGCCGC
AATCAGGTGGTGGCCTGA
Translation:
MCVTQKDRLDDSRSNLYADQLNRGFRGLRFLPELERDYRRYMLEDSFALKRIALSVGMLVWLAFIGIDLLIL
AGPPLWGVLAVRLGVLVLLLVCGCLIMLRRHIQLMVPLSIACVLALGVGAAAVVGLAHRADPGYPYEGLLLV
SFAAYFLAGLRLSQALSCALVVLLAYLGFEWWAGTQEPLGNNLLFLLFGNLIGAVGCYLLEFKSREHFLISR
LLRVMADHDSLTGLHNRRSFNQHLDRLWRQAQREQKTLALLLCDVDHFKAYNDRYGHQAGDAVLQRIGAVFE
ANARRPLDMAVRLGGEEFALLLYGANEHEARLRAEALRAQVQALRMEHEASDTAREVTLSVGVSCLWPTPGN
DLKRLYDLYEHADRALYEAKAFGRNQVVA*
AnnotationID:1579GeneID:1570
AnnotatorUID: diggins
Modification Date/Time: 2005-08-28 10:10:02
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA3343
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA16805.1| (D90900) regulatory components of sensory transduction system
           [Synechocystis sp. PCC 6803]
          Length = 452

 Score =  144 bits (363), Expect = 9e-34
 Identities = 73/172 (42%), Positives = 111/172 (64%), Gaps = 3/172 (1%)

>emb|CAD17549.1| (AL646078) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 488

 Score =  141 bits (356), Expect = 6e-33
 Identities = 83/214 (38%), Positives = 118/214 (55%), Gaps = 11/214 (5%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14385




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20290




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32220




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1570_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1570
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2787
                           PA3343_tr
                           translation of PA3343
                           389
                           99.99
                           99.99
                           0
                           2000.0
     

     
     
87324
                           gb|AAG06731.1|AE004756_9
                           (AE004756) hypothetical protein PA3343 [Pseudomonas aeruginosa PAO1]
                           389
                           99.74
                           99.99
                           0
                           1997.0
     

     
     
2788
                           PA1851_tr
                           translation of PA1851
                           417
                           40.52
                           52.51
                           44
                           608.0
     

     
     
87325
                           gb|AAG05240.1|AE004611_5
                           (AE004611) hypothetical protein PA1851 [Pseudomonas aeruginosa PAO1]
                           417
                           40.52
                           52.51
                           44
                           608.0
     

     
     
87331
                           gb|AAO55020.1|
                           (AE016861) response regulator/GGDEF domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           412
                           28.39
                           42.23
                           101
                           333.0
     

     






      

          
GC ORFID: 44572How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3343Glimmer Score: 

          
Start: 3161629Stop: 3160460

          
Length: 1170


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3343 translation of PA3343Homolog Bit Score 775.0

          
Other Homologs:  t_PA1851 (ORF: BLASTX 232.0), t_PA3702 (ORF: BLASTX 147.0), psyr_15may02_Scaffold3_revised_gene4587 (ORF: BLASTX 137.0), psyr_15may02_Scaffold7_revised_gene7294 (ORF: BLASTX 115.0), t_PA0290 (ORF: BLASTX 108.0), t_PA3343 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTGCGTGACACAGAAGGACCGGTTGGACGACTCCCGTTCCAACCTCTATGCGGACCAATTGAACCGCGGT 
TTCCGCGGCCTGCGTTTCCTTCCCGAACTGGAGCGTGACTACCGGCGCTACATGCTGGAGGACAGCTTCGCG 
CTGAAACGCATCGCCCTCAGCGTCGGCATGCTCGTCTGGCTGGCGTTCATCGGCATCGACCTGCTGATCCTC 
GCTGGTCCTCCGCTGTGGGGCGTACTGGCGGTGCGCCTTGGCGTGCTGGTCCTGCTACTGGTCTGCGGCTGC 
CTGATCATGCTGCGCCGGCACATCCAGCTGATGGTGCCGCTGAGCATCGCCTGCGTCCTCGCCCTTGGCGTC 
GGTGCGGCGGCGGTGGTCGGCCTGGCGCATCGGGCGGATCCCGGCTATCCCTACGAAGGCCTGCTGCTGGTC 
AGTTTCGCCGCCTATTTCCTCGCCGGCCTGCGGTTGTCGCAGGCATTGAGCTGTGCGTTGGTCGTGCTGCTC 
GCCTACCTGGGTTTCGAGTGGTGGGCGGGTACCCAGGAGCCGCTGGGCAACAACCTGCTGTTCCTGCTGTTC 
GGTAACCTGATCGGCGCGGTCGGCTGCTACCTGCTGGAGTTCAAGTCGCGCGAGCATTTCCTCATCAGCCGC 
CTGTTGCGGGTGATGGCCGACCACGACAGCCTGACCGGCCTGCACAACCGGCGCAGCTTCAACCAGCACCTG 
GACCGCCTCTGGCGCCAGGCCCAGCGCGAACAGAAGACCCTGGCGCTGCTGCTTTGCGACGTCGACCATTTC 
AAGGCCTATAACGACCGCTACGGACACCAGGCTGGCGATGCGGTCCTGCAGCGCATCGGCGCGGTGTTCGAG 
GCGAATGCCAGGCGTCCGCTGGACATGGCGGTGCGCCTGGGCGGCGAAGAGTTCGCCCTGTTGCTGTACGGC 
GCCAACGAGCACGAGGCGAGGCTGCGCGCGGAAGCGCTGCGCGCACAGGTCCAGGCGCTGCGCATGGAGCAC 
GAGGCGTCGGACACGGCGCGCGAAGTGACCCTGTCGGTCGGCGTGTCCTGCCTGTGGCCGACCCCGGGCAAC 
GACCTGAAGCGCCTCTACGATCTCTACGAGCATGCCGATCGCGCGCTTTACGAAGCCAAGGCATTCGGCCGC 
AATCAGGTGGTGGCCTGA