ViewGene

Locus Name:
GeneID:
Location:

GeneID:1569
TrivialName: PA14_42950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42950
PAO1 Ortholog Locus:PA1665
Sequence Length:1194
Protein Length:397
Start: 3819662
Stop: 3818469
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05054.1|AE004594_6 (AE004594) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 390/397 (98%), Positives = 392/397 (98%)
Sequence:
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTGTGCAGCAAGACCTTCGGC
AGGAACGGCGGCCTCATCGGCCGCGGCGGTGAGTGCGACTGGGCGATTCCCGATCGCAAGCGGCACCTGTCC
AAGCAGCATGCGCGGGTCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGC
GCCGGCAACGGCAGCCGCCTGCCGCATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGC
GACTTCGAGATCCGCGCGCGGTTGCTGCGCGAGCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCG
GCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCGATCCGTTGCAGGCGCTCGACCAGGACGGTGCA
GATGCCTACGAACTCGACGACCTGAGCGCGATTGCCCAGCCCAGCCAGGAGGCCGGGGCGCGTGCGGACTAC
GCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGCTCCGCAGGAACCCGTG
GAAAGTCCGCGTCCGGGTCACGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCCCTGGGAATGGACCTCGAA
GGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCAACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACGTTGCGCGAT
ACCGGCAAGAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAG
CCTGGCCAGTTGAGTGGCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCGCACCAGGTGGCGCTG
CTCGGCGCCAGCCGGGCGGCGGTGCGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGACCCTGCGTTTC
GAGCGCGACGGCCGCCGGCCGTTGCTGGCCACCTCGGGCAGCCGCTGGCGTGCCTATGGTCGCTACCACCAG
TCGCTATGCCAGGACGACGACTGGAGCGAGCGCCTGCTGGCACGTGATTTCGCCCAGGCCTACGAAGAGCAG
GTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA
Translation:
MELVLEMLSAKQFVPTELCSKTFGRNGGLIGRGGECDWAIPDRKRHLSKQHARVSYRNGAFYLTDTSSNGIR
AGNGSRLPHGEPQRIEQDSVFLLGDFEIRARLLREPDELAMDVGRPQPAGSIIPDDAFLALDPLQALDQDGA
DAYELDDLSAIAQPSQEAGARADYARIDMESLVVPELVPAPAAPQEPVESPRPGHDEAFWQRFGQALGMDLE
GLDGAAREALAINAAGLLRQCIGGLQQSLRTRSELKNELRLSLSTLRDTGKNPLRFSADAGEALGHLLRDGK
PGQLSGEQAVARSFRDLQAHQVALLGASRAAVRATLEHFSPQQLTLRFERDGRRPLLATSGSRWRAYGRYHQ
SLCQDDDWSERLLARDFAQAYEEQVRLISTLYTEHQG*
AnnotationID:1578GeneID:1569
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 18:06:30
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1665
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58844.1| (AE016875) FHA domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 398

 Score =  520 bits (1339), Expect = e-147
 Identities = 270/400 (67%), Positives = 320/400 (80%), Gaps = 5/400 (1%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:3141
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20288
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37202
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1569_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1569

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2786 PA1665_tr translation of PA1665 397 98.23 98.74 0 2002.0
87322 gb|AAG05054.1|AE004594_6 (AE004594) hypothetical protein PA1665 [Pseudomonas aeruginosa PAO1] 397 98.23 98.74 0 2002.0
87323 gb|AAO58844.1| (AE016875) FHA domain protein [Pseudomonas syringae pv. tomato str. DC3000] 403 67.49 79.40 11 1350.0
GC ORFID: 44571How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1665Glimmer Score:
Start: 1134247Stop: 1135440
Length: 1194
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1665 translation of PA1665Homolog Bit Score 775.0
Other Homologs: t_PA1665 (ORF: GLIMMER)
GC ORF Sequence
ATGGAACTGGTATTGGAAATGCTCAGCGCCAAGCAATTCGTACCGACGGAGCTGTGCAGCAAGACCTTCGGC
AGGAACGGCGGCCTCATCGGCCGCGGCGGTGAGTGCGACTGGGCGATTCCCGATCGCAAGCGGCACCTGTCC
AAGCAGCATGCGCGGGTCAGCTATCGCAACGGCGCGTTCTACCTGACCGACACCAGCAGCAACGGCATCCGC
GCCGGCAACGGCAGCCGCCTGCCGCATGGCGAGCCGCAGCGCATCGAGCAGGACAGCGTCTTCCTGCTCGGC
GACTTCGAGATCCGCGCGCGGTTGCTGCGCGAGCCCGACGAGCTCGCCATGGACGTCGGGCGGCCGCAGCCG
GCGGGCAGCATCATTCCGGACGATGCCTTCCTGGCCCTCGATCCGTTGCAGGCGCTCGACCAGGACGGTGCA
GATGCCTACGAACTCGACGACCTGAGCGCGATTGCCCAGCCCAGCCAGGAGGCCGGGGCGCGTGCGGACTAC
GCGCGGATCGACATGGAAAGCCTGGTCGTACCGGAGCTGGTGCCCGCCCCGGCGGCTCCGCAGGAACCCGTG
GAAAGTCCGCGTCCGGGTCACGACGAAGCCTTCTGGCAGCGTTTCGGCCAGGCCCTGGGAATGGACCTCGAA
GGCCTCGACGGCGCTGCGCGCGAAGCGCTGGCGATCAACGCCGCCGGTTTGCTGCGGCAGTGCATCGGCGGC
TTGCAGCAGAGCCTGCGGACCCGCAGCGAACTGAAGAACGAACTGCGCCTGTCGCTGAGCACGTTGCGCGAT
ACCGGCAAGAATCCCTTGCGCTTCAGCGCCGATGCCGGCGAGGCGCTGGGTCATCTGCTACGGGATGGCAAG
CCTGGCCAGTTGAGTGGCGAACAGGCCGTCGCACGCAGTTTCCGCGACCTCCAGGCGCACCAGGTGGCGCTG
CTCGGCGCCAGCCGGGCGGCGGTGCGCGCGACCCTCGAGCATTTCTCGCCGCAGCAGCTGACCCTGCGTTTC
GAGCGCGACGGCCGCCGGCCGTTGCTGGCCACCTCGGGCAGCCGCTGGCGTGCCTATGGTCGCTACCACCAG
TCGCTATGCCAGGACGACGACTGGAGCGAGCGCCTGCTGGCACGTGATTTCGCCCAGGCCTACGAAGAGCAG
GTTCGCCTGATTTCCACCCTCTACACCGAGCACCAAGGATGA