ViewGene
Locus Name:
GeneID:
Location:

GeneID:1568
TrivialName: PA14_52900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52900
PAO1 Ortholog Locus:PA0879
Sequence Length:1161
Protein Length:386
Start: 4690221
Stop: 4689061
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04268.1|AE004522_10 (AE004522) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 386/386 (100%), Positives = 386/386 (100%)
Sequence:
ATGAATCCGAACAGCGAAGAGCTGAACGCGATCCGCGAGGGCGTACGTGCCCTCTGCGCCGAATTCGACGCC
GCCTACTGGCGCCGCATCGACGAGCAGCGCGGTTTTCCCGAGGCCTTCGTCAAGGCCCTGACCGACGCCGGC
TGGCTCTCGGCAATGATCCCGGAGGAGTACGGCGGTTCCGGCCTGGGCCTGGCCGAGGCCTCGGTGATCCTG
GAGGAAGTCAACCGCTGCGGCGGCAACTCCGGCACCGTGCACGGGCAGATGTACAACATGTTCACGCTGCTG
CGTAACGGCAGCGAGGCGCAGAAGCGCTTCTACCTGCCGAAGCTGGCCAGCGGCGAGCTGCGCCTGCAGTCG
ATGGGGGTGACCGAGCCGACCACCGGCACCGATACCACCAAGATCAAGACCACCGCCGTGCGCAAGGGCGAC
CGCTATGTGATCAACGGGCAGAAGGTGTGGATCTCGCGGATCCAGCACTCCGACCTGATGATCCTGCTGGCG
CGCACCACGCCGCTGGCCGAGGTGAAGCGCAAGTCCGAAGGCATGTCGATCTTCCTCGTCGACCTGCGCGAG
GCCATCGGCAAGGGCCTGACCGTGCAGCCGATCGCCAACATGGTCAACCACGAGACCAACGAGCTGTTCTTC
GACAACCTGGAGATCCCCGCCGATAGCCTGATCGGTGAGGAAGGCAAGGGCTTCCGCTACATCCTCGACGGC
CTCAATGCCGAGCGCACCCTGATCGCCGCCGAATGCATCGGCGACGGCCGCTGGTTCATCGACAAGGCCAGC
CACTATGCCCGCGACCGCGTGGTCTTCGGCCGGCCGATAGGGCAGAACCAGGGCGTGCAGTTCCCCATCGCC
GAGGCGCACATCGAAGTGGAGGCCGCCGACCTGATGCGCTGGCGCGCCTGCCAGGAGTACGACGCTGGGCTC
AACGCCGGGGCCAGCGCGAACATGGCCAAGTACCTGGCGGCGAAAGCTTCCTGGGAGGCGGCCAACGCCTGC
CTGCAGACCCACGGCGGCTTCGGCTTCGCCTGCGAGTACGACGTCGAGCGCAAGTTCCGCGAGACCCGCCTG
TACCAGGTGGCGCCGATCTCCACCAACCTGATCCTGTCCTACGTGGCCGAGCACCTGCTCGAACTGCCGCGC
TCGTTCTGA
Translation:
MNPNSEELNAIREGVRALCAEFDAAYWRRIDEQRGFPEAFVKALTDAGWLSAMIPEEYGGSGLGLAEASVIL
EEVNRCGGNSGTVHGQMYNMFTLLRNGSEAQKRFYLPKLASGELRLQSMGVTEPTTGTDTTKIKTTAVRKGD
RYVINGQKVWISRIQHSDLMILLARTTPLAEVKRKSEGMSIFLVDLREAIGKGLTVQPIANMVNHETNELFF
DNLEIPADSLIGEEGKGFRYILDGLNAERTLIAAECIGDGRWFIDKASHYARDRVVFGRPIGQNQGVQFPIA
EAHIEVEAADLMRWRACQEYDAGLNAGASANMAKYLAAKASWEAANACLQTHGGFGFACEYDVERKFRETRL
YQVAPISTNLILSYVAEHLLELPRSF*
AnnotationID:1577GeneID:1568
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 13:01:17
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA0879
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1960, KOG0139, KOG0141, KOG0140
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1960, CaiA, Acyl-CoA dehydrogenases. Score: 299, 9e-82
KOG0139, Short-chain acyl-CoA dehydrogenase. Score: 220, 3e-58
KOG0141, Isovaleryl-CoA dehydrogenase. Score: 220, 5e-58
KOG0140, Medium-chain acyl-CoA dehydrogenase. Score: 206, 9e-54






   
Genomic Context:






   
Comment:


















    ReferenceID:3139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20286




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1568
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2785
                           PA0879_tr
                           translation of PA0879
                           386
                           99.99
                           99.99
                           0
                           2002.0
     

     
     
87300
                           gb|AAG04268.1|AE004522_10
                           (AE004522) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           386
                           99.99
                           99.99
                           0
                           2002.0
     

     
     
87301
                           gb|AAL19793.1|
                           (AE008736) putative acyl-CoA dehydrogenase [Salmonella typhimurium LT2]
                           387
                           74.41
                           86.82
                           1
                           1545.0
     

     
     
87302
                           emb|CAE31119.1|
                           (BX640438) putative acyl-CoA dehydrogenase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           388
                           71.39
                           86.34
                           2
                           1493.0
     

     
     
87303
                           emb|CAE36198.1|
                           (BX640424) putative acyl-CoA dehydrogenase [Bordetella parapertussis]
                           388
                           71.13
                           86.08
                           2
                           1484.0
     

     






      

          
GC ORFID: 44570How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0879Glimmer Score: 

          
Start: 263686Stop: 264846

          
Length: 1161


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0879 translation of PA0879Homolog Bit Score 775.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene292 (ORF: BLASTX 737.0), t_PA0879 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCGAACAGCGAAGAGCTGAACGCGATCCGCGAGGGCGTACGTGCCCTCTGCGCCGAATTCGACGCC 
GCCTACTGGCGCCGCATCGACGAGCAGCGCGGTTTTCCCGAGGCCTTCGTCAAGGCCCTGACCGACGCCGGC 
TGGCTCTCGGCAATGATCCCGGAGGAGTACGGCGGTTCCGGCCTGGGCCTGGCCGAGGCCTCGGTGATCCTG 
GAGGAAGTCAACCGCTGCGGCGGCAACTCCGGCACCGTGCACGGGCAGATGTACAACATGTTCACGCTGCTG 
CGTAACGGCAGCGAGGCGCAGAAGCGCTTCTACCTGCCGAAGCTGGCCAGCGGCGAGCTGCGCCTGCAGTCG 
ATGGGGGTGACCGAGCCGACCACCGGCACCGATACCACCAAGATCAAGACCACCGCCGTGCGCAAGGGCGAC 
CGCTATGTGATCAACGGGCAGAAGGTGTGGATCTCGCGGATCCAGCACTCCGACCTGATGATCCTGCTGGCG 
CGCACCACGCCGCTGGCCGAGGTGAAGCGCAAGTCCGAAGGCATGTCGATCTTCCTCGTCGACCTGCGCGAG 
GCCATCGGCAAGGGCCTGACCGTGCAGCCGATCGCCAACATGGTCAACCACGAGACCAACGAGCTGTTCTTC 
GACAACCTGGAGATCCCCGCCGATAGCCTGATCGGTGAGGAAGGCAAGGGCTTCCGCTACATCCTCGACGGC 
CTCAATGCCGAGCGCACCCTGATCGCCGCCGAATGCATCGGCGACGGCCGCTGGTTCATCGACAAGGCCAGC 
CACTATGCCCGCGACCGCGTGGTCTTCGGCCGGCCGATAGGGCAGAACCAGGGCGTGCAGTTCCCCATCGCC 
GAGGCGCACATCGAAGTGGAGGCCGCCGACCTGATGCGCTGGCGCGCCTGCCAGGAGTACGACGCTGGGCTC 
AACGCCGGGGCCAGCGCGAACATGGCCAAGTACCTGGCGGCGAAAGCTTCCTGGGAGGCGGCCAACGCCTGC 
CTGCAGACCCACGGCGGCTTCGGCTTCGCCTGCGAGTACGACGTCGAGCGCAAGTTCCGCGAGACCCGCCTG 
TACCAGGTGGCGCCGATCTCCACCAACCTGATCCTGTCCTACGTGGCCGAGCACCTGCTCGAACTGCCGCGC 
TCGTTCTGA