ViewGene
Locus Name:
GeneID:
Location:

GeneID:1567
TrivialName: PA14_54630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54630
PAO1 Ortholog Locus:PA0746
Sequence Length:1164
Protein Length:387
Start: 4843462
Stop: 4844625
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04135.1|AE004509_10 (AE004509) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 386/387 (99%), Positives = 387/387 (100%)
Sequence:
ATGGATTTCGACCTCACCGAAGAACAACGCCTGCTGGTGGAGAGCGCCCGCGCCTTCGCCCGCCACGAACTG
GCGCCGAAGGCGGCCGACTGGGACCGCGACCATCACTTCCCGGTGGAAGTCCTCCGCGCCGCCGCCGAACAG
GGCTACCTCGGCCTGTACATCGCCGAGGAAGACGGCGGCCTGGGCCTGTCGCGGCTGTCCACTTCGCTGATC
TTCGAGCAACTGGCCGCCGGCTGCGTGGCCACTACCGCCTACATCAGCATCCACAACATGGCCGCCTGGATG
CTCGCCTCGTTCGGCGACGCGGCGCTGAAGGAGGCCTGGCTGCCCGGCCTGATCGGCGGCGAGTCGCTCGCC
TCCTATTGCCTGACCGAGCCCGATGCCGGCTCCGACGCCGCGCGCCTGCGCACCCGCGCCCGCCGCGAGGGC
GACGAATACGTGCTGGACGGCAGCAAGTGCTTCATTTCCGGCGCCGGCAGCACCCAGGTGCTGATCGTCATG
GCGCGCACCGGCGAGGACGGCGCCAGGGGCATCTCCTGCTTCCTGGTGCCGGCCGACGCGCCCGGCATCCGC
TACGGCCGCAACGAGGACAAGATGGGCTGGCGCGCGCAGCCGACCCGCACCATCACCTTCGAAGGCGTGCGC
ATCCCCGCCGGCAACCGCATCGGCCCGGAGGGCCAGGGCTTCGTCTATGCCATGAAAGGCCTCGACGGCGGC
CGCCTGAACATCGCCAGTTGTTCCCTGGGCGCCGCCCAGGCGGCGCTGGAGCAGTCGATGCGCTACGTCGAG
GAGCGCGAGCAGTTCGGCAAGCCGCTGGCGACCTTCCAGGCCTTGCAGTTCAAGCTCGCCGACATGCTCACC
GAACTCACCGCCAGCCGCCAGATGGTCCGCCTCGGCGCCCATCGGCTGGACCGCGGCGACGCCGAGGCGACC
CTGTACTGCGCAATGGCCAAGCGCTTCGCCACCGACCGCTGCTTCGATGTCTGCAACGAGGCCTTGCAACTG
CACGGCGGCTACGGCTATCTCAACGATTATCCGCTGGAGCGCTGGGTACGCGACACCCGCGTGCACCAGATC
CTCGAAGGCACCAACGAAATCATGCGGGTGATCGTCGCCCGCCGCCTGCTGGAGCAGGGCGGCATGCTCGAT
CGCCTGCTGTGA
Translation:
MDFDLTEEQRLLVESARAFARHELAPKAADWDRDHHFPVEVLRAAAEQGYLGLYIAEEDGGLGLSRLSTSLI
FEQLAAGCVATTAYISIHNMAAWMLASFGDAALKEAWLPGLIGGESLASYCLTEPDAGSDAARLRTRARREG
DEYVLDGSKCFISGAGSTQVLIVMARTGEDGARGISCFLVPADAPGIRYGRNEDKMGWRAQPTRTITFEGVR
IPAGNRIGPEGQGFVYAMKGLDGGRLNIASCSLGAAQAALEQSMRYVEEREQFGKPLATFQALQFKLADMLT
ELTASRQMVRLGAHRLDRGDAEATLYCAMAKRFATDRCFDVCNEALQLHGGYGYLNDYPLERWVRDTRVHQI
LEGTNEIMRVIVARRLLEQGGMLDRLL*
AnnotationID:1576GeneID:1567
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 10:10:32
Gene Name:
Confidence Code:3
GeneProduct:probable acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA0746
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0140, COG1960
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG0140, Medium-chain acyl-CoA dehydrogenase [Lipid t...,  Score: 462, 6e-131
COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism],  Score: 330, 3e-91






   
Genomic Context:






   
Comment:


















    ReferenceID:3137




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20284




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1567
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2782
                           PA0746_tr
                           translation of PA0746
                           387
                           99.74
                           99.99
                           0
                           2001.0
     

     
     
87233
                           gb|AAG04135.1|AE004509_10
                           (AE004509) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           387
                           99.74
                           99.99
                           0
                           2001.0
     

     
     
87234
                           gb|AAQ59756.1|
                           (AE016917) acyl-CoA dehydrogenase [Chromobacterium violaceum ATCC 12472]
                           387
                           63.56
                           78.81
                           1
                           1321.0
     

     
     
87235
                           gb|AAN54734.1|AE015614_1
                           (AE015614) acyl-CoA dehydrogenase family protein [Shewanella oneidensis MR-1]
                           389
                           63.23
                           77.63
                           6
                           1314.0
     

     
     
87239
                           dbj|BAC62464.1|
                           (AP005087) putative acyl-CoA dehydrogenase [Vibrio parahaemolyticus]
                           388
                           62.37
                           75.77
                           5
                           1248.0
     

     






      

          
GC ORFID: 44569How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0746Glimmer Score: 

          
Start: 110445Stop: 109282

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0746 translation of PA0746Homolog Bit Score 775.0

          
Other Homologs:  t_PA2552 (ORF: BLASTX 314.0), psyr_15may02_Scaffold1_revised_gene624 (ORF: BLASTX 283.0), t_PA1631 (ORF: BLASTX 249.0), t_PA0746 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTTCGACCTCACCGAAGAACAACGCCTGCTGGTGGAGAGCGCCCGCGCCTTCGCCCGCCACGAACTG 
GCGCCGAAGGCGGCCGACTGGGACCGCGACCATCACTTCCCGGTGGAAGTCCTCCGCGCCGCCGCCGAACAG 
GGCTACCTCGGCCTGTACATCGCCGAGGAAGACGGCGGCCTGGGCCTGTCGCGGCTGTCCACTTCGCTGATC 
TTCGAGCAACTGGCCGCCGGCTGCGTGGCCACTACCGCCTACATCAGCATCCACAACATGGCCGCCTGGATG 
CTCGCCTCGTTCGGCGACGCGGCGCTGAAGGAGGCCTGGCTGCCCGGCCTGATCGGCGGCGAGTCGCTCGCC 
TCCTATTGCCTGACCGAGCCCGATGCCGGCTCCGACGCCGCGCGCCTGCGCACCCGCGCCCGCCGCGAGGGC 
GACGAATACGTGCTGGACGGCAGCAAGTGCTTCATTTCCGGCGCCGGCAGCACCCAGGTGCTGATCGTCATG 
GCGCGCACCGGCGAGGACGGCGCCAGGGGCATCTCCTGCTTCCTGGTGCCGGCCGACGCGCCCGGCATCCGC 
TACGGCCGCAACGAGGACAAGATGGGCTGGCGCGCGCAGCCGACCCGCACCATCACCTTCGAAGGCGTGCGC 
ATCCCCGCCGGCAACCGCATCGGCCCGGAGGGCCAGGGCTTCGTCTATGCCATGAAAGGCCTCGACGGCGGC 
CGCCTGAACATCGCCAGTTGTTCCCTGGGCGCCGCCCAGGCGGCGCTGGAGCAGTCGATGCGCTACGTCGAG 
GAGCGCGAGCAGTTCGGCAAGCCGCTGGCGACCTTCCAGGCCTTGCAGTTCAAGCTCGCCGACATGCTCACC 
GAACTCACCGCCAGCCGCCAGATGGTCCGCCTCGGCGCCCATCGGCTGGACCGCGGCGACGCCGAGGCGACC 
CTGTACTGCGCAATGGCCAAGCGCTTCGCCACCGACCGCTGCTTCGATGTCTGCAACGAGGCCTTGCAACTG 
CACGGCGGCTACGGCTATCTCAACGATTATCCGCTGGAGCGCTGGGTACGCGACACCCGCGTGCACCAGATC 
CTCGAAGGCACCAACGAAATCATGCGGGTGATCGTCGCCCGCCGCCTGCTGGAGCAGGGCGGCATGCTCGAT 
CGCCTGCTGTGA