ViewGene
Locus Name:
GeneID:
Location:

GeneID:1565
TrivialName: PA14_03470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03470
PAO1 Ortholog Locus:PA0267
Sequence Length:1200
Protein Length:399
Start: 316965
Stop: 318164
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03656.1|AE004465_2 (AE004465) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 398/399 (99%), Positives = 398/399 (99%)
Sequence:
ATGAGTGCCGCGAAAAAGGCCCCCGTCATCCTGATTGCCGACCCGGACCCCTGGAGTCGCGACTTGCTTGGC
CAACTGGTCCTCGGCGTGCGTTGCGATGCCCGGCTGGTCCTCTGCGGCGATGGCGGGGAAGCGCTGGCGCAT
TGCCGGCGCCGGCGCTTCGCGTTGATCCTGGCCGAGCTGAACCTGCCGCAGGTGGATGGCTTCGAGCTGCTG
CGCGAAGCGCGCCTGCGCCGCTCGGTCGCCGAGCAGCCGTTCATCCTGATCAGCGACCGCGCCGACCAGGCC
AGCGTGCGCGCCGCCGTGGCACTGGCGCCGACCGCCTACCTGGTGAAGCCGTTCCAGGCCGAGAACCTGATG
CAACGCCTGCGAGGGTTGTTGCTGAAGGGCGACGAAGTGGTCGCCTGTCCGCTGCCGGAGCGGGACGCGGGC
GAGAACCTGGAGGCTTTCCTCGAACGCGCGCGCGACTCCGCGGAGGGGGCGCCGTTGCTGGCCGACGTGCGT
GCCGCCAGCGATCGTTGCCTGAGCGCCGAGGAGCATCCGCTGCGCGTGCTGGAGGATGAGTTCGGTCGCGAC
CCGCAGATCACCGCTGGCCTGATCGCCGCCGCCAACAGCGCCGCCCGGCACGTCGGTCCGGCCTGCCAGACC
CTGGGCCAGGCCCTGCGGCGGCTGGGACTCGGGCACAGCCTGAACCTGGTGCTCGGTTTCAGTCTGCAGCGG
GCCATCCAGCTCGGCGAGCCGCTGCTGGCCGAGCGCGCCATGCACTTCTGGGATCTTTCGCAACGTTGCGCG
GACATCGCCTGGGAACTGGCCGACGCCCTCGGCGCGGACGTCGAGCGCTGCTATACCGCAGGGCTGCTGCAT
CGCCTGGGCGACCTGGCGCTGCTGCGGACATTGCAGGATTGGTGCGATGGCGGCGGCGCGCTGGACGAGGCG
CGGCTCGACGAGCTGCTGGGGCGTTTCGGCGCCAGCTTCGGCTCGGCCCTGCGGGCGCGTTGGCGGCTGCCG
CTGGAGCTGCGCCGGCTGATCGCTGCGGCGTACCAGTTCGGTGGCGTGCTTTCCCGCGAAGAGCTGATCCTC
AGCCTGGCGACCCAGGCCGCCAGCCTGCCCGAGGACGACGCGGAGCAACTGGCCGAGAGCAAGGCTGCCCGC
ATGCTCGGCCTGGACGGCGAACGACTGGCGAAACTGCTGCAGCCCTGA
Translation:
MSAAKKAPVILIADPDPWSRDLLGQLVLGVRCDARLVLCGDGGEALAHCRRRRFALILAELNLPQVDGFELL
REARLRRSVAEQPFILISDRADQASVRAAVALAPTAYLVKPFQAENLMQRLRGLLLKGDEVVACPLPERDAG
ENLEAFLERARDSAEGAPLLADVRAASDRCLSAEEHPLRVLEDEFGRDPQITAGLIAAANSAARHVGPACQT
LGQALRRLGLGHSLNLVLGFSLQRAIQLGEPLLAERAMHFWDLSQRCADIAWELADALGADVERCYTAGLLH
RLGDLALLRTLQDWCDGGGALDEARLDELLGRFGASFGSALRARWRLPLELRRLIAAAYQFGGVLSREELIL
SLATQAASLPEDDAEQLAESKAARMLGLDGERLAKLLQP*
AnnotationID:1574GeneID:1565
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:36
Gene Name:
Confidence Code:3
GeneProduct:putative response regulator
Cell Localization:()
Synonyms:PA0267
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1639
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65847.1|AE016213_3 (AE016774) response regulator [Pseudomonas putida KT2440]
          Length = 419

 Score =  350 bits (897), Expect = 1e-95
 Identities = 203/397 (51%), Positives = 258/397 (64%), Gaps = 5/397 (1%)








 
Structural Features:
COG1639, COG1639, Predicted signal transduction protein 
[Signal transduction mechanisms]
CD-Length = 289 residues,  95.5% aligned
Score =  204 bits (519), Expect = 2e-53
Identities = 97/281 (34%), Positives = 124/281 (44%), Gaps = 21/281 (7%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3133




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20280




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33618




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1565_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1565
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2780
                           PA0267_tr
                           translation of PA0267
                           399
                           99.74
                           99.74
                           0
                           2003.0
     

     
     
87180
                           gb|AAG03656.1|AE004465_2
                           (AE004465) hypothetical protein PA0267 [Pseudomonas aeruginosa PAO1]
                           399
                           99.74
                           99.74
                           0
                           2003.0
     

     
     
87181
                           gb|AAN65847.1|AE016213_3
                           (AE016774) response regulator [Pseudomonas putida KT2440]
                           422
                           48.57
                           61.84
                           26
                           906.0
     

     
     
87182
                           gb|AAO53848.1|
                           (AE016857) response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           462
                           40.25
                           52.16
                           63
                           790.0
     

     






      

          
GC ORFID: 44567How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0267Glimmer Score: 

          
Start: 6118306Stop: 6119505

          
Length: 1200


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0267 translation of PA0267Homolog Bit Score 776.0

          
Other Homologs:  t_PA0267 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGCCGCGAAAAAGGCCCCCGTCATCCTGATTGCCGACCCGGACCCCTGGAGTCGCGACTTGCTTGGC 
CAACTGGTCCTCGGCGTGCGTTGCGATGCCCGGCTGGTCCTCTGCGGCGATGGCGGGGAAGCGCTGGCGCAT 
TGCCGGCGCCGGCGCTTCGCGTTGATCCTGGCCGAGCTGAACCTGCCGCAGGTGGATGGCTTCGAGCTGCTG 
CGCGAAGCGCGCCTGCGCCGCTCGGTCGCCGAGCAGCCGTTCATCCTGATCAGCGACCGCGCCGACCAGGCC 
AGCGTGCGCGCCGCCGTGGCACTGGCGCCGACCGCCTACCTGGTGAAGCCGTTCCAGGCCGAGAACCTGATG 
CAACGCCTGCGAGGGTTGTTGCTGAAGGGCGACGAAGTGGTCGCCTGTCCGCTGCCGGAGCGGGACGCGGGC 
GAGAACCTGGAGGCTTTCCTCGAACGCGCGCGCGACTCCGCGGAGGGGGCGCCGTTGCTGGCCGACGTGCGT 
GCCGCCAGCGATCGTTGCCTGAGCGCCGAGGAGCATCCGCTGCGCGTGCTGGAGGATGAGTTCGGTCGCGAC 
CCGCAGATCACCGCTGGCCTGATCGCCGCCGCCAACAGCGCCGCCCGGCACGTCGGTCCGGCCTGCCAGACC 
CTGGGCCAGGCCCTGCGGCGGCTGGGACTCGGGCACAGCCTGAACCTGGTGCTCGGTTTCAGTCTGCAGCGG 
GCCATCCAGCTCGGCGAGCCGCTGCTGGCCGAGCGCGCCATGCACTTCTGGGATCTTTCGCAACGTTGCGCG 
GACATCGCCTGGGAACTGGCCGACGCCCTCGGCGCGGACGTCGAGCGCTGCTATACCGCAGGGCTGCTGCAT 
CGCCTGGGCGACCTGGCGCTGCTGCGGACATTGCAGGATTGGTGCGATGGCGGCGGCGCGCTGGACGAGGCG 
CGGCTCGACGAGCTGCTGGGGCGTTTCGGCGCCAGCTTCGGCTCGGCCCTGCGGGCGCGTTGGCGGCTGCCG 
CTGGAGCTGCGCCGGCTGATCGCTGCGGCGTACCAGTTCGGTGGCGTGCTTTCCCGCGAAGAGCTGATCCTC 
AGCCTGGCGACCCAGGCCGCCAGCCTGCCCGAGGACGACGCGGAGCAACTGGCCGAGAGCAAGGCTGCCCGC 
ATGCTCGGCCTGGACGGCGAACGACTGGCGAAACTGCTGCAGCCCTGA