Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAG03495.1| AE004449_4 (AE004449) cytochrome c oxidase, subunit II [Pseudomonas aeruginosa PAO1]
Identities = 374/374 (100%), Positives = 374/374 (100%)
Sequence:
ATGCTGCGACATCCACGAGTCTGGATGGGCTTCCTTTTGCTCTCGGCGATCAGCCAGGCGAATGCCGCCTGG
ACGGTCAACATGGCCCCGGGCGCTACCGAGGTGAGCCGGTCCGTCTTCGACCTGCACATGACCATCTTCTGG
ATCTGCGTGGTGATCGGCGTGCTGGTCTTCGGCGCGATGTTCTGGTCGATGATCGTCCACCGCCGCTCCACC
GGCCAGCAGCCGGCGCATTTCCACGAGAGCACCACGGTGGAAATCCTCTGGACGGTGGTGCCGTTCGTGATC
CTGGTGGTGATGGCGGTGCCCGCCACCCGCACCCTGATCCACATCTACGACACTTCCGAGCCGGAGCTGGAC
GTGCAGGTCACCGGCTACCAGTGGAAGTGGCAGTACAAGTACCTGGGCCAGGACGTCGAGTACTTCAGCAAC
CTGGCCACCCCGCAGGACCAGATCCACAACCGGCAGGCGAAGGACGAGCATTACCTGCTGGAGGTGGACGAG
CCGCTGGTGCTGCCGGTGGGCACCAAGGTGCGCTTCCTGATCACCTCCAGCGACGTGATCCATTCCTGGTGG
GTGCCGGCCTTCGCGGTCAAGCGCGACGCCATCCCCGGCTTCGTCAACGAGGCCTGGACCAAGGTCGACGAG
CCCGGCATCTACCGCGGCCAGTGCGCCGAGCTGTGCGGCAAGGACCACGGCTTCATGCCGATCGTGGTCGAC
GTCAAGCCCAAGGCCGAGTTCGACCAGTGGCTGGCCAAGCGCAAGGAAGAGGCGGCGAAAGTCAAGGAACTG
ACCAGCAAGGAGTGGACCAAGGAAGAACTGGTCGCGCGCGGCGACAAGGTCTACCACACCATCTGCGCCGCC
TGCCACCAGGCCGAAGGCCAGGGCATGCCGCCGATGTTCCCGGCGCTGAAGGGCTCGAAGATCGTCACCGGG
CCCAAGGAGCACCACCTGGAAGTGGTCTTCAACGGCGTGCCCGGCACCGCCATGGCGGCCTTCGGCAAGCAG
CTCAACGAGGTCGACCTGGCCGCGGTGATCACCTACGAGCGCAACGCCTGGGGCAACGACGATGGCGACATG
GTCACCCCGAAAGACGTCGTCGCCTACAAGCAGAAACAACAATAG
Translation:
MLRHPRVWMGFLLLSAISQANAAWTVNMAPGATEVSRSVFDLHMTIFWICVVIGVLVFGAMFWSMIVHRRST
GQQPAHFHESTTVEILWTVVPFVILVVMAVPATRTLIHIYDTSEPELDVQVTGYQWKWQYKYLGQDVEYFSN
LATPQDQIHNRQAKDEHYLLEVDEPLVLPVGTKVRFLITSSDVIHSWWVPAFAVKRDAIPGFVNEAWTKVDE
PGIYRGQCAELCGKDHGFMPIVVDVKPKAEFDQWLAKRKEEAAKVKELTSKEWTKEELVARGDKVYHTICAA
CHQAEGQGMPPMFPALKGSKIVTGPKEHHLEVVFNGVPGTAMAAFGKQLNEVDLAAVITYERNAWGNDDGDM
VTPKDVVAYKQKQQ*
AnnotationID:1573 GeneID:1564
Modification Date/Time:
2005-03-22 18:06:09
GeneProduct: cytochrome c oxidase, subunit II
Cell Localization Confidence Code: 5
Functional Category: (12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: >gb|AAN65737.1| AE016200_1 (AE016774) cytochrome c oxidase, subunit II [Pseudomonas putida
KT2440]
Length = 375
Score = 657 bits (1696), Expect = 0.0
Identities = 301/373 (80%), Positives = 338/373 (90%)
>gb|AAN57566.1| AE015892_6 (AE015892) cytochrome c oxidase, subunit II [Shewanella oneidensis
MR-1]
Length = 513
Score = 446 bits (1146), Expect = e-124
Identities = 214/369 (57%), Positives = 270/369 (73%), Gaps = 6/369 (1%)
>dbj|BAC61879.1| (AP005085) cytochrome c oxidase, subunit II [Vibrio
parahaemolyticus]
Length = 387
Score = 440 bits (1131), Expect = e-123
Identities = 202/352 (57%), Positives = 263/352 (74%), Gaps = 4/352 (1%)
Structural Features: COG1622 , CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2
[Energy production and conversion]
CD-Length = 247 residues, 92.7% aligned
Score = 216 bits (551), Expect = 3e-57
Identities = 88/256 (34%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
pfam00116 , COX2, Cytochrome C oxidase subunit II, periplasmic domain.
CD-Length = 132 residues, 99.2% aligned
Score = 144 bits (365), Expect = 2e-35
Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)