ViewGene
Locus Name:
GeneID:
Location:

GeneID:1563
TrivialName: PA14_18090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18090
PAO1 Ortholog Locus:PA3573
Sequence Length:1179
Protein Length:392
Start: 1551985
Stop: 1553163
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06961.1|AE004778_5 (AE004778) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 392/392 (100%), Positives = 392/392 (100%)
Sequence:
ATGAACCTGCGCATCCTGCTGATACTGGGAGCCCTGAGCGCCTTCGGGCCACTGGCCATCGACTTCTACCTG
CCGAGCTTCCCGACCCTGGCCAAGGCCTTTGCCACCGACGTCGAGCACGTCCAACTGAGCCTGGCCGCCTAC
TTCGCCGGCCTGTCCATCGGCCAGTTGCTCTACGGCCCGGTGGCCGACCGCTATGGCCGGCGCCTGCCGCTG
CTGGTGGGGGTGAGTATCTTCACCCTGGCCTCGGCCGCCTGCGCCCTGGCGCCGAGCCTGGAGTGGCTGATC
GCCGCGCGCTTCGTCCAGGCCCTCGGCGGCTGCGCCGGGATGGTCATCTCGCGGGCAGTGGTGCGTGACCTG
TGCGATCCGATCGGCGCCGCCAAGGCGTTTTCCCAGTTGATGCTGGTGATGGGCCTGGCGCCGATCCTCGCC
CCCGTGGCCGGCGGCCTGCTGCTGGACTGGCAGGGCTGGCAATCGATCTTCGTCTGCCTGACCCTGTTCGCC
GCCCTGGCCGGCCTCGGCGTGGCGTTGTGGCTGCCGGAAACCATCCCGGCCGACGGCGAGCGACCGCCGCTG
TCCGGCGCGCTGGGGCAGTACCGGCGGCTGTTCGCCGACCGCCTGTTTCTCGCCTATGGCCTTTCCGGCGGG
GTGGCGATGGCCGGGATGTTCGCCTACATCGCCGGTTCGCCCTACGTGTTCATCCAGCTCTACGGGATTCCC
GCCGAGCACTATGGCTGGCTGTTCGGCAGCAATGCCGCGGGCTTCATCGTCATGGCACAGGTCAACGCGCGG
CTGCTGCGCTATCGCGGGCCGGCGTTCTGGCTGCGGCGGATCATCTGGGGCTACCTGGCGTGCGGCCTGGCC
CTGCTGGGCATCGCTTCGCTGCAACCGGCCACGCTGTGGCCGCTGCtgGTTCCGCTGTTCGGATGCGTGGCC
AGCCTCGGCTGCATCATTCCCAACGCTTCCGCCTGCGCCATGGCCGGACAGGGACAGCACGCCGGCAGCGCC
TCGGCGCTGATGGGCAGCCTGCAGTTCAGCGTGGCGGCGGGCGCTTCGGCGCTGGTCGGCGTGCTCCACGAC
GGCACGGCGATCCCCATGACTCTGGTGATCGCCGTCTGCGGCGCGGTCGCGACCCTGCTCGCCTGGCAGACC
GGGCGCCTGGAGCGCCAGGCCGCCTGA
Translation:
MNLRILLILGALSAFGPLAIDFYLPSFPTLAKAFATDVEHVQLSLAAYFAGLSIGQLLYGPVADRYGRRLPL
LVGVSIFTLASAACALAPSLEWLIAARFVQALGGCAGMVISRAVVRDLCDPIGAAKAFSQLMLVMGLAPILA
PVAGGLLLDWQGWQSIFVCLTLFAALAGLGVALWLPETIPADGERPPLSGALGQYRRLFADRLFLAYGLSGG
VAMAGMFAYIAGSPYVFIQLYGIPAEHYGWLFGSNAAGFIVMAQVNARLLRYRGPAFWLRRIIWGYLACGLA
LLGIASLQPATLWPLLVPLFGCVASLGCIIPNASACAMAGQGQHAGSASALMGSLQFSVAAGASALVGVLHD
GTAIPMTLVIAVCGAVATLLAWQTGRLERQAA*
AnnotationID:1572GeneID:1563
AnnotatorUID: diggins
Modification Date/Time: 2005-07-05 06:06:29
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator subfamily transporter protein
Cell Localization:()
Synonyms:PA3573
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative drug resistance transporter, Bcr/CflA family
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66216.1|AE016249_8 (AE016776) multidrug resistance transporter, Bcr/CflA family
           [Pseudomonas putida KT2440]
          Length = 393

 Score =  564 bits (1453), Expect = e-160
 Identities = 277/391 (70%), Positives = 335/391 (85%)

>gb|AAM88665.1|AF390440_1 (AF390440) major facilitator subfamily transporter protein
           [Pseudomonas putida]
          Length = 398

 Score =  560 bits (1444), Expect = e-159
 Identities = 275/392 (70%), Positives = 328/392 (83%)

>emb|CAD15879.1| (AL646068) PROBABLE DRUG TRANSPORT TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 407

 Score =  317 bits (813), Expect = 6e-86
 Identities = 173/376 (46%), Positives = 226/376 (60%), Gaps = 2/376 (0%)







 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  90.6% aligned
Score = 88.7 bits (220), Expect = 2e-18
Identities = 80/366 (21%), Positives = 129/366 (35%), Gaps = 10/366 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20276




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31968




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1563_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1563
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2777
                           PA3573_tr
                           translation of PA3573
                           392
                           99.99
                           99.99
                           0
                           2004.0
     

     
     
87147
                           gb|AAG06961.1|AE004778_5
                           (AE004778) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           392
                           99.99
                           99.99
                           0
                           2004.0
     

     
     
87148
                           gb|AAN66216.1|AE016249_8
                           (AE016776) multidrug resistance transporter, Bcr/CflA family [Pseudomonas putida KT2440]
                           393
                           70.48
                           85.24
                           1
                           1452.0
     

     
     
87149
                           gb|AAM88665.1|AF390440_1
                           (AF390440) major facilitator subfamily transporter protein [Pseudomonas putida]
                           398
                           69.09
                           82.41
                           6
                           1444.0
     

     
     
87150
                           gb|AAO54295.1|
                           (AE016858) drug resistance transporter, Bcr/CflA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           398
                           66.83
                           79.14
                           6
                           1388.0
     

     






      

          
GC ORFID: 44565How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3573Glimmer Score: 

          
Start: 3401951Stop: 3400773

          
Length: 1179


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3573 translation of PA3573Homolog Bit Score 776.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3494 (ORF: BLASTX 544.0), t_PA4136 (ORF: BLASTX 271.0), t_PA3573 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCGCATCCTGCTGATACTGGGAGCCCTGAGCGCCTTCGGGCCACTGGCCATCGACTTCTACCTG 
CCGAGCTTCCCGACCCTGGCCAAGGCCTTTGCCACCGACGTCGAGCACGTCCAACTGAGCCTGGCCGCCTAC 
TTCGCCGGCCTGTCCATCGGCCAGTTGCTCTACGGCCCGGTGGCCGACCGCTATGGCCGGCGCCTGCCGCTG 
CTGGTGGGGGTGAGTATCTTCACCCTGGCCTCGGCCGCCTGCGCCCTGGCGCCGAGCCTGGAGTGGCTGATC 
GCCGCGCGCTTCGTCCAGGCCCTCGGCGGCTGCGCCGGGATGGTCATCTCGCGGGCAGTGGTGCGTGACCTG 
TGCGATCCGATCGGCGCCGCCAAGGCGTTTTCCCAGTTGATGCTGGTGATGGGCCTGGCGCCGATCCTCGCC 
CCCGTGGCCGGCGGCCTGCTGCTGGACTGGCAGGGCTGGCAATCGATCTTCGTCTGCCTGACCCTGTTCGCC 
GCCCTGGCCGGCCTCGGCGTGGCGTTGTGGCTGCCGGAAACCATCCCGGCCGACGGCGAGCGACCGCCGCTG 
TCCGGCGCGCTGGGGCAGTACCGGCGGCTGTTCGCCGACCGCCTGTTTCTCGCCTATGGCCTTTCCGGCGGG 
GTGGCGATGGCCGGGATGTTCGCCTACATCGCCGGTTCGCCCTACGTGTTCATCCAGCTCTACGGGATTCCC 
GCCGAGCACTATGGCTGGCTGTTCGGCAGCAATGCCGCGGGCTTCATCGTCATGGCACAGGTCAACGCGCGG 
CTGCTGCGCTATCGCGGGCCGGCGTTCTGGCTGCGGCGGATCATCTGGGGCTACCTGGCGTGCGGCCTGGCC 
CTGCTGGGCATCGCTTCGCTGCAACCGGCCACGCTGTGGCCGCTGCtgGTTCCGCTGTTCGGATGCGTGGCC 
AGCCTCGGCTGCATCATTCCCAACGCTTCCGCCTGCGCCATGGCCGGACAGGGACAGCACGCCGGCAGCGCC 
TCGGCGCTGATGGGCAGCCTGCAGTTCAGCGTGGCGGCGGGCGCTTCGGCGCTGGTCGGCGTGCTCCACGAC 
GGCACGGCGATCCCCATGACTCTGGTGATCGCCGTCTGCGGCGCGGTCGCGACCCTGCTCGCCTGGCAGACC 
GGGCGCCTGGAGCGCCAGGCCGCCTGA