ViewGene
Locus Name:
GeneID:
Location:

GeneID:1561
TrivialName: PA14_23500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23500
PAO1 Ortholog Locus:PA3139
Sequence Length:1197
Protein Length:398
Start: 2045540
Stop: 2044344
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06527.1|AE004738_1 (AE004738) probable amino acid aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 397/398 (99%), Positives = 397/398 (99%)
Sequence:
ATGAGTCTGTTTTCTGCCGTCGAAATGGCACCGCGTGATCCCATCCTTGGCCTGAACGAAGCCTTCAACGCC
GATACCCGTCCGGGCAAGATCAACCTGGGCGTGGGCGTGTACTACAACGAGGAGGGGCGCATTCCGCTGTTG
CGTGCCGTGCAGGCTGCCGAGAAGGCCCGCATCGAGGCCCACGCGCCGCGCGGCTACCTGCCGATCGAAGGG
ATCGCCGCCTACGACCAGGGCGTACAGAAACTGCTGTTCGGTAACGAATCCGAGCTGCTGGCCGCCGGCCGC
GTGGTCACGACCCAGGCCGTCGGCGGCACCGGCGCCCTCAAGCTCGGCGCCGACTTCCTCAAGCGCCTGCTG
CCCGACGCCACCGTGGCCATCAGCGACCCGAGCTGGGAAAACCACCGCGCACTGTTCGAAGCCGCCGGCTTC
CCGGTGCAGAACTACCGCTATTACGACGCCGCCAGCAATGGCGTGAACCGCGCCGGCCTGCTGGAAGACCTG
AATGCCCTGCCGGCCCGCTCGATCGTGGTCCTGCACGCCTGCTGCCATAATCCGACCGGCGTCGATCTCGAG
CTGGACGACTGGAAACAGGTGCTGGACGTGCTCAAGGCCAAGGGCCACGTGCCGTTCCTCGACATCGCCTAC
CAGGGCTTCGGCAACGGCATCGAGGAAGACGCCGCCGCGGTGCGCCTGTTCGCCCAGTCGGGCCTGAGCTTC
TTCGTTTCCAGCTCGTTCTCCAAATCCTTCTCGCTCTATGGCGAACGCGTCGGCGCCCTCTCGATCGTGACC
GAAAGCCGCGATGAATCGGCCCGCGTGCTGTCCCAGGTGAAGCGGGTGATCCGCACCAACTATTCGAACCCA
CCGACCCACGGCGCCAGCGTCGTCTCCTCCGTGCTCAACAGCTCGGAACTGCGGGCCCTCTGGGAGCAGGAA
CTGGGCGAGATGCGCGACCGCATCCGCGACATGCGCCTGGCGATGGTCGAGCAACTGGCAGCCCACGGCGCC
AAGCGCGACTTCAGCTTCGTCGGTCGCCAGCGTGGCATGTTCTCCTATTCCGGCCTGACCGCCGACCAGGTC
GAGCGCCTGAAGACCGAGTTCGGTATCTATGCCGTCAGCACCGGCCGTATCTGCGTCGCCGCGCTGAACAAA
TCGAACCTGGAGACCATCACCAAGGCCATCGTCCAGGTCCTGTAG
Translation:
MSLFSAVEMAPRDPILGLNEAFNADTRPGKINLGVGVYYNEEGRIPLLRAVQAAEKARIEAHAPRGYLPIEG
IAAYDQGVQKLLFGNESELLAAGRVVTTQAVGGTGALKLGADFLKRLLPDATVAISDPSWENHRALFEAAGF
PVQNYRYYDAASNGVNRAGLLEDLNALPARSIVVLHACCHNPTGVDLELDDWKQVLDVLKAKGHVPFLDIAY
QGFGNGIEEDAAAVRLFAQSGLSFFVSSSFSKSFSLYGERVGALSIVTESRDESARVLSQVKRVIRTNYSNP
PTHGASVVSSVLNSSELRALWEQELGEMRDRIRDMRLAMVEQLAAHGAKRDFSFVGRQRGMFSYSGLTADQV
ERLKTEFGIYAVSTGRICVAALNKSNLETITKAIVQVL*
AnnotationID:1570GeneID:1561
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 11:11:36
Gene Name:tyrB
Confidence Code:3
GeneProduct:putative amino acid aminotransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:aspartate aminotransferase
Functional Category Confidence Code:5
COGs:pfam00155,COG1448
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67587.1|AE016388_7 (AE016781) aromatic-amino-acid aminotransferase [Pseudomonas putida
           KT2440]
          Length = 398

 Score =  630 bits (1624), Expect = e-180
 Identities = 318/398 (79%), Positives = 348/398 (87%)

>gb|AAO55680.1| (AE016863) aspartate aminotransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 398

 Score =  622 bits (1604), Expect = e-177
 Identities = 307/398 (77%), Positives = 356/398 (89%)

>gb|AAM39416.1| (AE012104) aromatic-amino-acid aminotransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 400

 Score =  484 bits (1245), Expect = e-136
 Identities = 244/398 (61%), Positives = 308/398 (77%), Gaps = 2/398 (0%)






 
Structural Features:
pfam00155, Aminotran_1_2, Aminotransferase class I and II.
CD-Length = 316 residues,  96.5% aligned
Score =  224 bits (573), Expect = 1e-59
Identities = 95/307 (30%), Positives = 138/307 (44%), Gaps = 6/307 (1%)

COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 396 residues, 100.0% aligned
Score =  602 bits (1555), Expect = 2e-173
Identities = 232/396 (58%), Positives = 300/396 (75%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3125




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20272




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32383




  
Author/Investigator(s):
        





  
Title:
        CDD Searcj




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1561_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1561
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2770
                           PA3139_tr
                           translation of PA3139
                           398
                           99.74
                           99.74
                           0
                           2003.0
     

     
     
86900
                           gb|AAG06527.1|AE004738_1
                           (AE004738) probable amino acid aminotransferase [Pseudomonas aeruginosa PAO1]
                           398
                           99.74
                           99.74
                           0
                           2003.0
     

     
     
86901
                           gb|AAD45270.1|AF147795_13
                           (AF147795) aromatic-amino-acid aminotransferase [Pseudomonas aeruginosa]
                           398
                           99.24
                           99.49
                           0
                           1995.0
     

     
     
86902
                           gb|AAN67587.1|AE016388_7
                           (AE016781) aromatic-amino-acid aminotransferase [Pseudomonas putida KT2440]
                           398
                           79.89
                           87.43
                           0
                           1624.0
     

     
     
86903
                           gb|AAO55680.1|
                           (AE016863) aspartate aminotransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           398
                           77.13
                           89.44
                           0
                           1604.0
     

     






      

          
GC ORFID: 44563How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3139Glimmer Score: 

          
Start: 2908391Stop: 2909587

          
Length: 1197


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3139 translation of PA3139Homolog Bit Score 776.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene459 (ORF: BLASTX 631.0), psyr_15may02_Scaffold6_revised_gene6482 (ORF: BLASTX 404.0), t_PA0870 (ORF: BLASTX 345.0), t_PA3139 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTGTTTTCTGCCGTCGAAATGGCACCGCGTGATCCCATCCTTGGCCTGAACGAAGCCTTCAACGCC 
GATACCCGTCCGGGCAAGATCAACCTGGGCGTGGGCGTGTACTACAACGAGGAGGGGCGCATTCCGCTGTTG 
CGTGCCGTGCAGGCTGCCGAGAAGGCCCGCATCGAGGCCCACGCGCCGCGCGGCTACCTGCCGATCGAAGGG 
ATCGCCGCCTACGACCAGGGCGTACAGAAACTGCTGTTCGGTAACGAATCCGAGCTGCTGGCCGCCGGCCGC 
GTGGTCACGACCCAGGCCGTCGGCGGCACCGGCGCCCTCAAGCTCGGCGCCGACTTCCTCAAGCGCCTGCTG 
CCCGACGCCACCGTGGCCATCAGCGACCCGAGCTGGGAAAACCACCGCGCACTGTTCGAAGCCGCCGGCTTC 
CCGGTGCAGAACTACCGCTATTACGACGCCGCCAGCAATGGCGTGAACCGCGCCGGCCTGCTGGAAGACCTG 
AATGCCCTGCCGGCCCGCTCGATCGTGGTCCTGCACGCCTGCTGCCATAATCCGACCGGCGTCGATCTCGAG 
CTGGACGACTGGAAACAGGTGCTGGACGTGCTCAAGGCCAAGGGCCACGTGCCGTTCCTCGACATCGCCTAC 
CAGGGCTTCGGCAACGGCATCGAGGAAGACGCCGCCGCGGTGCGCCTGTTCGCCCAGTCGGGCCTGAGCTTC 
TTCGTTTCCAGCTCGTTCTCCAAATCCTTCTCGCTCTATGGCGAACGCGTCGGCGCCCTCTCGATCGTGACC 
GAAAGCCGCGATGAATCGGCCCGCGTGCTGTCCCAGGTGAAGCGGGTGATCCGCACCAACTATTCGAACCCA 
CCGACCCACGGCGCCAGCGTCGTCTCCTCCGTGCTCAACAGCTCGGAACTGCGGGCCCTCTGGGAGCAGGAA 
CTGGGCGAGATGCGCGACCGCATCCGCGACATGCGCCTGGCGATGGTCGAGCAACTGGCAGCCCACGGCGCC 
AAGCGCGACTTCAGCTTCGTCGGTCGCCAGCGTGGCATGTTCTCCTATTCCGGCCTGACCGCCGACCAGGTC 
GAGCGCCTGAAGACCGAGTTCGGTATCTATGCCGTCAGCACCGGCCGTATCTGCGTCGCCGCGCTGAACAAA 
TCGAACCTGGAGACCATCACCAAGGCCATCGTCCAGGTCCTGTAG