ViewGene
Locus Name:
GeneID:
Location:

GeneID:1560
TrivialName: PA14_46180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46180
PAO1 Ortholog Locus:PA1412
Sequence Length:1194
Protein Length:397
Start: 4106577
Stop: 4107770
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04801.1|AE004570_9 (AE004570) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 396/397 (99%), Positives = 396/397 (99%)
Sequence:
ATGTCCCGTGATTTTCTTCGTTCGCCGCTGGTCGGCCTGCTCGCCTGCCTGCTGGCGCTGGTGGTCGCCATG
GGGGTCGGGCGCTTCTCCCTGACCCCGCAACTGCCGCACCTGATCCGCGAAGGCCAGCTCGACCTGACCGGC
GCCGGCCTGCTGGCCGCCGCCAACTACCTCGGCTACCTGGTCGGCGCGCTGGACGCGCTGTTCGCCCGCGAA
GCGCGGCAGGCGCGCTTGCGCCTGCTGGTCGGGCTATGGGCCTGCTTCGGCCTGACCCTGGCCTCGGTCTGG
GCCGAGGGCTTCTGGCCGCACGCGCTGCTGCGCTTCGGTCTTGGCGTGGCCAGCGCCTGGGTCCTGATCATG
GTCACCGCCCTCAGCCAGCGCCTCGCCGCGGAAAGCGGTCGGGCCCGGCTGGGCGCGCTGGTGTTCGCCGGC
CCCGGCATCGGGGTGATGGTCACCGGCCTGCTGGCGGCATTGGGCAACGCCCtggGCCAGGACTCGGTGTTC
ATCTGGAAGCTCTTCGCCGACCTCGCGCTGGTCCTGATCCTCATGCTCCTGCCGCTGCTGCCGCGCCCGGCC
GCACGCAGCGCCGGCCACGACGCGCCTGCAACGGCAAGCGAGAACGCCGGCCTCGGCCGCCTGACCTGGGCC
TACGGACTGGTCGGCCTCGGCTACATCATCCCGGCCACCTTTCTCTCGCAGATGGCCGCGGCGCGTTTCCAC
GGGCAATGGCAGGCCGATCTGTTCTGGCCCTGCTTCGGCCTGGCCTCGGCCACCGGGGTAGTGCTGATCAGC
CTGCGCCGGCAGCGCCCGGACGGCACCCGCCGCTGGCTGGTCGGCGCGCTCTGGCTACAGGCCCTCGGCGTG
CTCGCCTGCCTGCTGCCGGGGATCGGCGGACTGGCCCTGGGGGTAGTGCTGACCGGCCTGCCGTTCCTCGCC
GGCATGCAACTGGTGATGCAATACGCCCGCGAACTGGCGCCGCATACGCCGCAGCGCAACGCCGGCCAACTG
ACCACCGGTTTCGCCCTCGGCCAGTTGCTCGGCCCGCTGCTGGCGGCGCTCAGCACGCATTTCGCCGGCGGC
CTGCAACCGGCGCTGGCGCTCGCCGGGCTCGGCCTGGTCTTCGCCGGCCTGCTGTTGCGCCGGCCGCACTCG
CTCAGCGTCGCAGCAGGCGTCGCAGCCACTGCTCGCCGCTGA
Translation:
MSRDFLRSPLVGLLACLLALVVAMGVGRFSLTPQLPHLIREGQLDLTGAGLLAAANYLGYLVGALDALFARE
ARQARLRLLVGLWACFGLTLASVWAEGFWPHALLRFGLGVASAWVLIMVTALSQRLAAESGRARLGALVFAG
PGIGVMVTGLLAALGNALGQDSVFIWKLFADLALVLILMLLPLLPRPAARSAGHDAPATASENAGLGRLTWA
YGLVGLGYIIPATFLSQMAAARFHGQWQADLFWPCFGLASATGVVLISLRRQRPDGTRRWLVGALWLQALGV
LACLLPGIGGLALGVVLTGLPFLAGMQLVMQYARELAPHTPQRNAGQLTTGFALGQLLGPLLAALSTHFAGG
LQPALALAGLGLVFAGLLLRRPHSLSVAAGVAATARR*
AnnotationID:1569GeneID:1560
AnnotatorUID: diggins
Modification Date/Time: 2005-01-26 11:11:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:yjiJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative transport protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70100.1|AE016649_8 (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 390

 Score =  441 bits (1133), Expect = e-123
 Identities = 239/378 (63%), Positives = 281/378 (74%), Gaps = 7/378 (1%)

>gb|AAM86218.1|AE013869_3 (AE013869) putative transport protein [Yersinia pestis KIM]
          Length = 383

 Score =  293 bits (751), Expect = 1e-78
 Identities = 170/371 (45%), Positives = 225/371 (60%), Gaps = 5/371 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3123




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20270




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37430




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1560_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1560
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2769
                           PA1412_tr
                           translation of PA1412
                           397
                           99.74
                           99.74
                           0
                           2004.0
     

     
     
86895
                           gb|AAG04801.1|AE004570_9
                           (AE004570) hypothetical protein PA1412 [Pseudomonas aeruginosa PAO1]
                           397
                           99.74
                           99.74
                           0
                           2004.0
     

     
     
86896
                           gb|AAN70100.1|AE016649_8
                           (AE016791) membrane protein, putative [Pseudomonas putida KT2440]
                           404
                           59.90
                           70.79
                           21
                           1138.0
     

     
     
86897
                           gb|AAM86218.1|AE013869_3
                           (AE013869) putative transport protein [Yersinia pestis KIM]
                           399
                           43.85
                           57.39
                           18
                           752.0
     

     
     
86898
                           emb|CAC90327.1|
                           (AJ414148) putative exported protein [Yersinia pestis CO92]
                           399
                           43.85
                           57.39
                           18
                           752.0
     

     






      

          
GC ORFID: 44562How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1412Glimmer Score: 

          
Start: 847332Stop: 846139

          
Length: 1194


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1412 translation of PA1412Homolog Bit Score 776.0

          
Other Homologs:  t_PA1412 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCGTGATTTTCTTCGTTCGCCGCTGGTCGGCCTGCTCGCCTGCCTGCTGGCGCTGGTGGTCGCCATG 
GGGGTCGGGCGCTTCTCCCTGACCCCGCAACTGCCGCACCTGATCCGCGAAGGCCAGCTCGACCTGACCGGC 
GCCGGCCTGCTGGCCGCCGCCAACTACCTCGGCTACCTGGTCGGCGCGCTGGACGCGCTGTTCGCCCGCGAA 
GCGCGGCAGGCGCGCTTGCGCCTGCTGGTCGGGCTATGGGCCTGCTTCGGCCTGACCCTGGCCTCGGTCTGG 
GCCGAGGGCTTCTGGCCGCACGCGCTGCTGCGCTTCGGTCTTGGCGTGGCCAGCGCCTGGGTCCTGATCATG 
GTCACCGCCCTCAGCCAGCGCCTCGCCGCGGAAAGCGGTCGGGCCCGGCTGGGCGCGCTGGTGTTCGCCGGC 
CCCGGCATCGGGGTGATGGTCACCGGCCTGCTGGCGGCATTGGGCAACGCCCtggGCCAGGACTCGGTGTTC 
ATCTGGAAGCTCTTCGCCGACCTCGCGCTGGTCCTGATCCTCATGCTCCTGCCGCTGCTGCCGCGCCCGGCC 
GCACGCAGCGCCGGCCACGACGCGCCTGCAACGGCAAGCGAGAACGCCGGCCTCGGCCGCCTGACCTGGGCC 
TACGGACTGGTCGGCCTCGGCTACATCATCCCGGCCACCTTTCTCTCGCAGATGGCCGCGGCGCGTTTCCAC 
GGGCAATGGCAGGCCGATCTGTTCTGGCCCTGCTTCGGCCTGGCCTCGGCCACCGGGGTAGTGCTGATCAGC 
CTGCGCCGGCAGCGCCCGGACGGCACCCGCCGCTGGCTGGTCGGCGCGCTCTGGCTACAGGCCCTCGGCGTG 
CTCGCCTGCCTGCTGCCGGGGATCGGCGGACTGGCCCTGGGGGTAGTGCTGACCGGCCTGCCGTTCCTCGCC 
GGCATGCAACTGGTGATGCAATACGCCCGCGAACTGGCGCCGCATACGCCGCAGCGCAACGCCGGCCAACTG 
ACCACCGGTTTCGCCCTCGGCCAGTTGCTCGGCCCGCTGCTGGCGGCGCTCAGCACGCATTTCGCCGGCGGC 
CTGCAACCGGCGCTGGCGCTCGCCGGGCTCGGCCTGGTCTTCGCCGGCCTGCTGTTGCGCCGGCCGCACTCG 
CTCAGCGTCGCAGCAGGCGTCGCAGCCACTGCTCGCCGCTGA