ViewGene

Locus Name:
GeneID:
Location:

GeneID: 156

TrivialName: PA14_51450

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51450

PAO1 Ortholog Locus: PA0994

Sequence Length: 2520

Protein Length: 839

Start: 4575148

Stop: 4572629

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04383.1|AE004532_7 (AE004532) usher CupC3 [Pseudomonas aeruginosa PAO1] Identities = 828/839 (98%), Positives = 835/839 (99%)

Sequence:

GTGGCCATATTTAGGAAAAGGTTCGACCTCAAGGTGTCCGTCTATTCCAGGTCTTCCTGTCTCGTGGCCTTG
GGATTGGCTTTGCCTGCCGTAACTTCCGCGGTGGAATTCAACGCCGAGTTCCTGAACAACGAGGGCGGGGCG
CCCGTTGAACTGAAGTATTTCGAGAACGGCAACTCGGTGTCGCCCGGCACTTACAGCGTCGACATTCATTTG
AACCAGATCATGATCCGGCGCGAAGATGTCGTGTTCAGTGCCGATCCCGACACCGGAAGCGTTCGCCCGATC
ATTCGGATGGGCCTGCTCAAGGAGATTGGGGTCGATATCGCCCGGCTGACTCGGGACAAGCTCATTCCGGCC
AACCTGGAAAACAATACGCCCCTGAATGTCGCCGAACTCATCCCCGGTGCATCCGTAGAGTTCGACGTCAAC
AGCCTTTCCCTGCTGGTCAGCATTCCACAGCTGTATGTACAGCGGCACTCGCGTGGCTATGTGGATCCCTCT
CTTTGGGATGACGGCGTCACCGCGTTGTTTTCCAACTACCAGGCCAACTTCACGCGCAACACCAATTTTGGC
CAGAACAGCGATTACCGCTACCTGGGTCTGCGCAACGGCTTCAACCTGTTTGGCTGGCGCCTGCGCAACGAC
TCTTCCCTGAGCGGAGGTACCGGCATGCGCAACAAGTTCAGTAGCAACCGTACCTATGTGGAACGTGACATT
CGTGCCCTGAAGGGGACCTTGTCCCTCGGTGAGTTGTATACCTCCGCTCAGGGGGATGCTTTCGAGAGCGTG
CGTATGCGCGGCGTGCAACTGCAATCCGATATCGGCATGCTGCCCGACAACGAGATCAGCTATACCCCGGTG
GTGCGCGGTATCGCTGAAACCAATGCGACGGTCGAGGTGAGTCAGAATGGCTTCGTGATCTATTCCACCAAC
GTACCGCCCGGTGCGTTCGAGATCACCGACATCTATCCCAGCGGCTCCAATGGCGACCTGGAGGTCAAGATC
ATCGAGGCGGACGGACGCCAGCGGTCCTTCAAGCAGTCCTATTCCTACCTGCCGGTCATGACCCGCAAGGGG
AACCTGCGCTATGGCCTGGCCGCCGGTGAATACCATAATGACGGCCAGCCGTCGGTCAACCTGCTCCAGGGA
TCGGCTGTGTATGGCTTGTCCGACAGGGTTACCGGCTTTGGCGGCCTGCTGGCTGCGGAGAAGTACAATGCC
ACCAACCTGGGCCTCGGCTTCAACACGCCCCTGGGCGGTCTTTCTGCGGACGTGACCCATAGCCAGTCCCGC
ACGCGACGGGGTGGGCGCAACCAGGGGCAGAGTCTGCGGCTTCTCTATTCCAAGACCATCAACGCCACCGAA
ACCAGCTTTACCGTGGTGGGCTATCGCTATTCCACGGAAGGCTACCGTACTCTCAGCCAGCATATCGACGAC
ATGTCCGACGAGAGCTACCTCTATGGCTCAAGTTCCAGTCGGCAGAAGAGCCGCATAGACCTGACGGTGAAC
CAGACGCTGTTCCGACGCAGTTCGCTCTATCTCACGGCGGGCGAAACCACATATTGGAATCGCCCCGGCAGC
AGCCGTCGCGTGCAGTTCGGCTTCAGCAGCGGCATCAAGCGCGCGAGCTACAGCCTGGCGGTTTCCCGTACC
CAGGAGACGGGGTCGTTCGGGCGCTCCGATACCCAGTTCACGGCCTCCGTCAGCATCCCCTTGGGCGGTAGC
GCACGCTCCAGTCAGGTATATGCCAATGCCGTGAGTTCACAGCATGGTGATTCGAGTCTGAACACCGGTATC
TCCGGATACCTGGATGAAGCCAATGCGTTCAACTACAGCGCACAGGCCAACTACAGCAAGGACGGCGGCAAC
TCCGGCAGCGTCGGCCTGGGTTGGGACACGTCCAAGGCCAAGTTGTCCGCCAATTACAGCCAGGGGCGCGAC
AACAAGCAGATCAACCTGGGAGCAAGCGGTTCGGTAGTGGTGCATCCGGGGGGAGTGACCTTCGGCCAGCCG
GTGGGGGAAACGTTCGGCCTGGTGGAGGTTCCGGAGGTTGGCGGCGTCGGCCTCGACGGCTACTCTTCGGTT
CGCACCGACGGCCGTGGCTATGCCGTGCTCCCCTACATGCAACCCTATCGTTACAACTGGGTGAACCTGGAT
ACCAATACCCTTGGAAGCGATACCGAGATCAGCGACAGCACGCAAATGGCCGTGCCGACCCGGGGCGCCGTG
GTTGCCAAGCGTTTCTCCGCGGAGTCCGGTCGGCGGGTGCAGTTCGTCCTGAGCATGGAGTCTGGAGGAAAG
ATTCCCTTCGGTGCACAGGCATACGACAAGGAAGAGCGGGTCGTGGGAATGGTCGACAACCTGTCCCGTTTG
CTGGTGTTCGGTATCGAGGACCAGGGGCGCCTGTCCATTCGCTGGAGCGATGGCTCCTGTTCAGTCGACTAT
CAGTTGCCGCCCAGGAACAAGGACCTGACGTACGAACGAGTTGCGCTCAGTTGCCGTCGGTCCTCGATCTGA

Translation:

MAIFRKRFDLKVSVYSRSSCLVALGLALPAVTSAVEFNAEFLNNEGGAPVELKYFENGNSVSPGTYSVDIHL
NQIMIRREDVVFSADPDTGSVRPIIRMGLLKEIGVDIARLTRDKLIPANLENNTPLNVAELIPGASVEFDVN
SLSLLVSIPQLYVQRHSRGYVDPSLWDDGVTALFSNYQANFTRNTNFGQNSDYRYLGLRNGFNLFGWRLRND
SSLSGGTGMRNKFSSNRTYVERDIRALKGTLSLGELYTSAQGDAFESVRMRGVQLQSDIGMLPDNEISYTPV
VRGIAETNATVEVSQNGFVIYSTNVPPGAFEITDIYPSGSNGDLEVKIIEADGRQRSFKQSYSYLPVMTRKG
NLRYGLAAGEYHNDGQPSVNLLQGSAVYGLSDRVTGFGGLLAAEKYNATNLGLGFNTPLGGLSADVTHSQSR
TRRGGRNQGQSLRLLYSKTINATETSFTVVGYRYSTEGYRTLSQHIDDMSDESYLYGSSSSRQKSRIDLTVN
QTLFRRSSLYLTAGETTYWNRPGSSRRVQFGFSSGIKRASYSLAVSRTQETGSFGRSDTQFTASVSIPLGGS
ARSSQVYANAVSSQHGDSSLNTGISGYLDEANAFNYSAQANYSKDGGNSGSVGLGWDTSKAKLSANYSQGRD
NKQINLGASGSVVVHPGGVTFGQPVGETFGLVEVPEVGGVGLDGYSSVRTDGRGYAVLPYMQPYRYNWVNLD
TNTLGSDTEISDSTQMAVPTRGAVVAKRFSAESGRRVQFVLSMESGGKIPFGAQAYDKEERVVGMVDNLSRL
LVFGIEDQGRLSIRWSDGSCSVDYQLPPRNKDLTYERVALSCRRSSI*

AnnotationID:166 GeneID:156

AnnotatorUID: danlee

Modification Date/Time: 2004-05-14 16:04:26

Gene Name: cupC3

Confidence Code: 2

GeneProduct: usher CupC3

Cell Localization: (6) Outer membrane protein

Synonyms: PA0994

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (16) Motility & Attachment

Alternate Gene Product Name: probable fimbrial biogenesis usher protein�

Functional Category Confidence Code: 5

COGs: COG3188, pfam00577

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG3188, FimD, P pilus assembly protein, porin PapC. Score: 755, 0.0
pfam00577, Usher, Fimbrial Usher protein. Score: 685, 0.0

Genomic Context:

Part of probable fimbrial gene cluster of "chaperone-usher pathway"; 
Adjacent to proteins probably encoding fimbrial chaperone protein and
fimbrial subunit protein�

Comment:

ReferenceID:14069

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17457

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32097

Author/Investigator(s): Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.

Title: The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.

PubMed: 11381121 �

MedLine:

Source:

Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.

Reference Type: Journal

Data:

URL:

Homologs By Global Alignment

Gene ID:156

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

282 PA0994_tr translation of PA0994 839 98.68 99.52 0 4249.0

18331 gb|AAG04383.1|AE004532_7 (AE004532) usher CupC3 [Pseudomonas aeruginosa PAO1] 839 98.56 99.52 0 4246.0

GC ORFID: `43158`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0994`	Glimmer Score:
Start: `378759`	Stop: `381278`
Length: `2520`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0994 translation of PA0994`	Homolog Bit Score `1641.0`
Other Homologs: `psyr_15may02_Scaffold3_revised_gene4433 (ORF: BLASTX 668.0), t_PA0994 (ORF: GLIMMER)`
GC ORF Sequence
GTGGCCATATTTAGGAAAAGGTTCGACCTCAAGGTGTCCGTCTATTCCAGGTCTTCCTGTCTCGTGGCCTTG GGATTGGCTTTGCCTGCCGTAACTTCCGCGGTGGAATTCAACGCCGAGTTCCTGAACAACGAGGGCGGGGCG CCCGTTGAACTGAAGTATTTCGAGAACGGCAACTCGGTGTCGCCCGGCACTTACAGCGTCGACATTCATTTG AACCAGATCATGATCCGGCGCGAAGATGTCGTGTTCAGTGCCGATCCCGACACCGGAAGCGTTCGCCCGATC ATTCGGATGGGCCTGCTCAAGGAGATTGGGGTCGATATCGCCCGGCTGACTCGGGACAAGCTCATTCCGGCC AACCTGGAAAACAATACGCCCCTGAATGTCGCCGAACTCATCCCCGGTGCATCCGTAGAGTTCGACGTCAAC AGCCTTTCCCTGCTGGTCAGCATTCCACAGCTGTATGTACAGCGGCACTCGCGTGGCTATGTGGATCCCTCT CTTTGGGATGACGGCGTCACCGCGTTGTTTTCCAACTACCAGGCCAACTTCACGCGCAACACCAATTTTGGC CAGAACAGCGATTACCGCTACCTGGGTCTGCGCAACGGCTTCAACCTGTTTGGCTGGCGCCTGCGCAACGAC TCTTCCCTGAGCGGAGGTACCGGCATGCGCAACAAGTTCAGTAGCAACCGTACCTATGTGGAACGTGACATT CGTGCCCTGAAGGGGACCTTGTCCCTCGGTGAGTTGTATACCTCCGCTCAGGGGGATGCTTTCGAGAGCGTG CGTATGCGCGGCGTGCAACTGCAATCCGATATCGGCATGCTGCCCGACAACGAGATCAGCTATACCCCGGTG GTGCGCGGTATCGCTGAAACCAATGCGACGGTCGAGGTGAGTCAGAATGGCTTCGTGATCTATTCCACCAAC GTACCGCCCGGTGCGTTCGAGATCACCGACATCTATCCCAGCGGCTCCAATGGCGACCTGGAGGTCAAGATC ATCGAGGCGGACGGACGCCAGCGGTCCTTCAAGCAGTCCTATTCCTACCTGCCGGTCATGACCCGCAAGGGG AACCTGCGCTATGGCCTGGCCGCCGGTGAATACCATAATGACGGCCAGCCGTCGGTCAACCTGCTCCAGGGA TCGGCTGTGTATGGCTTGTCCGACAGGGTTACCGGCTTTGGCGGCCTGCTGGCTGCGGAGAAGTACAATGCC ACCAACCTGGGCCTCGGCTTCAACACGCCCCTGGGCGGTCTTTCTGCGGACGTGACCCATAGCCAGTCCCGC ACGCGACGGGGTGGGCGCAACCAGGGGCAGAGTCTGCGGCTTCTCTATTCCAAGACCATCAACGCCACCGAA ACCAGCTTTACCGTGGTGGGCTATCGCTATTCCACGGAAGGCTACCGTACTCTCAGCCAGCATATCGACGAC ATGTCCGACGAGAGCTACCTCTATGGCTCAAGTTCCAGTCGGCAGAAGAGCCGCATAGACCTGACGGTGAAC CAGACGCTGTTCCGACGCAGTTCGCTCTATCTCACGGCGGGCGAAACCACATATTGGAATCGCCCCGGCAGC AGCCGTCGCGTGCAGTTCGGCTTCAGCAGCGGCATCAAGCGCGCGAGCTACAGCCTGGCGGTTTCCCGTACC CAGGAGACGGGGTCGTTCGGGCGCTCCGATACCCAGTTCACGGCCTCCGTCAGCATCCCCTTGGGCGGTAGC GCACGCTCCAGTCAGGTATATGCCAATGCCGTGAGTTCACAGCATGGTGATTCGAGTCTGAACACCGGTATC TCCGGATACCTGGATGAAGCCAATGCGTTCAACTACAGCGCACAGGCCAACTACAGCAAGGACGGCGGCAAC TCCGGCAGCGTCGGCCTGGGTTGGGACACGTCCAAGGCCAAGTTGTCCGCCAATTACAGCCAGGGGCGCGAC AACAAGCAGATCAACCTGGGAGCAAGCGGTTCGGTAGTGGTGCATCCGGGGGGAGTGACCTTCGGCCAGCCG GTGGGGGAAACGTTCGGCCTGGTGGAGGTTCCGGAGGTTGGCGGCGTCGGCCTCGACGGCTACTCTTCGGTT CGCACCGACGGCCGTGGCTATGCCGTGCTCCCCTACATGCAACCCTATCGTTACAACTGGGTGAACCTGGAT ACCAATACCCTTGGAAGCGATACCGAGATCAGCGACAGCACGCAAATGGCCGTGCCGACCCGGGGCGCCGTG GTTGCCAAGCGTTTCTCCGCGGAGTCCGGTCGGCGGGTGCAGTTCGTCCTGAGCATGGAGTCTGGAGGAAAG ATTCCCTTCGGTGCACAGGCATACGACAAGGAAGAGCGGGTCGTGGGAATGGTCGACAACCTGTCCCGTTTG CTGGTGTTCGGTATCGAGGACCAGGGGCGCCTGTCCATTCGCTGGAGCGATGGCTCCTGTTCAGTCGACTAT CAGTTGCCGCCCAGGAACAAGGACCTGACGTACGAACGAGTTGCGCTCAGTTGCCGTCGGTCCTCGATCTGA