ViewGene
Locus Name:
GeneID:
Location:

GeneID:1559
TrivialName: PA14_50200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50200
PAO1 Ortholog Locus:PA1098
Sequence Length:1209
Protein Length:402
Start: 4460759
Stop: 4459551
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA93529.1| (L41213) sensor [Pseudomonas aeruginosa]
Identities = 402/402 (100%), Positives = 402/402 (100%)
Sequence:
ATGCAACCAGCCCTCAACGCCTTCCCCGAGCAGCCAGCCGATACGGCCGAGGCCACCAGCCGCGCCGGCCTC
GAGCAGGCCTTCGCGCTGTTCAACCAGATGTCCAGCCAGCTCAGCGAGTCCTACAGCCTGCTGGAGGAGCGC
GTTACCGAGCTGAAAGGGCAACTGGCCCTGGTCAGCGCGCAGCGCATGGAGGAGCTGGCGGAAAAGGAGCGC
CTGGCCAACCGCTTGCAGAGCCTGCTCGACCTGCTTCCCGGCGGCGTCATCGTCATCGATGCCCATGGCGTG
GTCCGCGAGGCCAACCCGGCGGCCCTGGGCCTGCTTGGCGAGCCGTTGGTGGGCATGCTCTGGCGCGAGGTG
ATCGCCCGCTGCTTCGCTCCGCGCGAGGATGACGGCCACGAGATTTCCCTGCGCGACGGACGTCGCCTGTCC
ATCGCCACCCGCTCGCTGAACGGCGAACCGGGTCAACTGATCCTGCTCAACGACCTTACCGATACCCGCCGT
CTCCAGGAGCAACTGGCGCGCCACGAGCGCCTGTCGGCGCTGGGGCGGATGGTCGCCTCGCTGGCCCACCAG
ATCCGCACGCCGTTGTCGGCGGCGTTGCTCTATGCCGGGCACCTCAGCGAGCAGGCGCTGCCGACCGACCAG
CAGCAACGCTTCGCCGGGCGCCTGAAGGAGCGCCTGCACGAACTGGAGCATCAGGTACGCGACATGCTGGTG
TTCGCCCGCGGCGAGCTGCCACTGACCGACCGGGTGGCGCCGAAGGCGCTGTTCGACAGCCTGCGCGCGGCG
GCCGAAGTCCATGTCCAGGGGCTCCAGGTGCGTTGGCAGTGCGAGGCGCGCGGCGGCGAGCTGCTGTGCAAT
CGCGACACCCTGGTGGGCACCGTGCTCAACCTGGTGGAGAACGCGATCCAGGCCTGCGGGCCCGAACTGCGC
CTGAAGGTGCATCTCTATGCCCGCGCCGACAGCCTGCGCCTCAGCGTCAGCGACAACGGACCGGGCATGGAT
CCGGCGACCCTGGCGCGCCTGGGCGAACCCTTCTTCACCACCAAGACCACCGGTACCGGGCTCGGCCTGGCG
GTGGTCAAGGCCGTGGCGCGCGCCCACCAGGGGCAATTGCAGTTGCGCTCTCGGCCGGGGCGCGGCACCTGC
GCCACCTTGATCCTGCCGCTGATTCCGGCGGCGCCTCTTTCTGCGATTCAGGAGTAA
Translation:
MQPALNAFPEQPADTAEATSRAGLEQAFALFNQMSSQLSESYSLLEERVTELKGQLALVSAQRMEELAEKER
LANRLQSLLDLLPGGVIVIDAHGVVREANPAALGLLGEPLVGMLWREVIARCFAPREDDGHEISLRDGRRLS
IATRSLNGEPGQLILLNDLTDTRRLQEQLARHERLSALGRMVASLAHQIRTPLSAALLYAGHLSEQALPTDQ
QQRFAGRLKERLHELEHQVRDMLVFARGELPLTDRVAPKALFDSLRAAAEVHVQGLQVRWQCEARGGELLCN
RDTLVGTVLNLVENAIQACGPELRLKVHLYARADSLRLSVSDNGPGMDPATLARLGEPFFTTKTTGTGLGLA
VVKAVARAHQGQLQLRSRPGRGTCATLILPLIPAAPLSAIQE*
AnnotationID:1568GeneID:1559
AnnotatorUID: danlee
Modification Date/Time: 2004-05-31 14:02:15
Gene Name:fleS
Confidence Code:1
GeneProduct:two-component sensor
Cell Localization:()
Synonyms:PA1098
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Two-component System 
Homology:






 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
             CD-Length = 336 residues,  98.2% aligned
             Score =  121 bits (302), Expect = 2e-28






   
Genomic Context:
fleQSR (Pseudomonas aeruginosa)






   
Comment:


















    ReferenceID:3121




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20268




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32396




  
Author/Investigator(s):
        Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R.





  
Title:
        A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner.




  
PubMed:
        97431510


MedLine:
        




    
Source:
J Bacteriol. 1997 Sep;179(17):5574-81.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32397




  
Author/Investigator(s):
        Ritchings BW, Almira EC, Lory S, Ramphal R.





  
Title:
        Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin.




  
PubMed:
        96071911


MedLine:
        




    
Source:
Infect Immun. 1995 Dec;63(12):4868-76.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1559
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
86879
                           gb|AAA93529.1|
                           (L41213) sensor [Pseudomonas aeruginosa]
                           402
                           99.99
                           99.99
                           0
                           2012.0
     

     
     
2768
                           PA1098_tr
                           translation of PA1098
                           402
                           99.75
                           99.75
                           0
                           2004.0
     

     
     
86880
                           gb|AAG04487.1|AE004540_7
                           (AE004540) two-component sensor [Pseudomonas aeruginosa PAO1]
                           402
                           99.75
                           99.75
                           0
                           2004.0
     

     
     
86881
                           gb|AAG47965.1|AF312695_5
                           (AF312695) FleS [Pseudomonas fluorescens]
                           408
                           75.24
                           83.82
                           11
                           1528.0
     

     
     
86882
                           gb|AAN69950.1|AE016633_8
                           (AE016790) sensory box histidine kinase FleS [Pseudomonas putida KT2440]
                           407
                           71.74
                           81.32
                           7
                           1432.0
     

     






      

          
GC ORFID: 44561How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1098Glimmer Score: 

          
Start: 493149Stop: 494357

          
Length: 1209


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1098 translation of PA1098Homolog Bit Score 776.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7915 (ORF: BLASTX 571.0), t_PA1098 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCAGCCCTCAACGCCTTCCCCGAGCAGCCAGCCGATACGGCCGAGGCCACCAGCCGCGCCGGCCTC 
GAGCAGGCCTTCGCGCTGTTCAACCAGATGTCCAGCCAGCTCAGCGAGTCCTACAGCCTGCTGGAGGAGCGC 
GTTACCGAGCTGAAAGGGCAACTGGCCCTGGTCAGCGCGCAGCGCATGGAGGAGCTGGCGGAAAAGGAGCGC 
CTGGCCAACCGCTTGCAGAGCCTGCTCGACCTGCTTCCCGGCGGCGTCATCGTCATCGATGCCCATGGCGTG 
GTCCGCGAGGCCAACCCGGCGGCCCTGGGCCTGCTTGGCGAGCCGTTGGTGGGCATGCTCTGGCGCGAGGTG 
ATCGCCCGCTGCTTCGCTCCGCGCGAGGATGACGGCCACGAGATTTCCCTGCGCGACGGACGTCGCCTGTCC 
ATCGCCACCCGCTCGCTGAACGGCGAACCGGGTCAACTGATCCTGCTCAACGACCTTACCGATACCCGCCGT 
CTCCAGGAGCAACTGGCGCGCCACGAGCGCCTGTCGGCGCTGGGGCGGATGGTCGCCTCGCTGGCCCACCAG 
ATCCGCACGCCGTTGTCGGCGGCGTTGCTCTATGCCGGGCACCTCAGCGAGCAGGCGCTGCCGACCGACCAG 
CAGCAACGCTTCGCCGGGCGCCTGAAGGAGCGCCTGCACGAACTGGAGCATCAGGTACGCGACATGCTGGTG 
TTCGCCCGCGGCGAGCTGCCACTGACCGACCGGGTGGCGCCGAAGGCGCTGTTCGACAGCCTGCGCGCGGCG 
GCCGAAGTCCATGTCCAGGGGCTCCAGGTGCGTTGGCAGTGCGAGGCGCGCGGCGGCGAGCTGCTGTGCAAT 
CGCGACACCCTGGTGGGCACCGTGCTCAACCTGGTGGAGAACGCGATCCAGGCCTGCGGGCCCGAACTGCGC 
CTGAAGGTGCATCTCTATGCCCGCGCCGACAGCCTGCGCCTCAGCGTCAGCGACAACGGACCGGGCATGGAT 
CCGGCGACCCTGGCGCGCCTGGGCGAACCCTTCTTCACCACCAAGACCACCGGTACCGGGCTCGGCCTGGCG 
GTGGTCAAGGCCGTGGCGCGCGCCCACCAGGGGCAATTGCAGTTGCGCTCTCGGCCGGGGCGCGGCACCTGC 
GCCACCTTGATCCTGCCGCTGATTCCGGCGGCGCCTCTTTCTGCGATTCAGGAGTAA