ViewGene
Locus Name:
GeneID:
Location:

GeneID:1558
TrivialName: PA14_54090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54090
PAO1 Ortholog Locus:PA0787
Sequence Length:1164
Protein Length:387
Start: 4798942
Stop: 4797779
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04176.1|AE004513_8 (AE004513) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 387/387 (100%), Positives = 387/387 (100%)
Sequence:
ATGCTGACCACCCTGGCGGTGTCCAACTACCGCACCCTGCGCGACCTGGTGATGCCGCTGCGGCGCCTGAAC
CTGATCACCGGCGCCAACGGCGCCGGCAAGTCCAACGTCTACCGGGCCTTGCGCCTGCTGGCGGACAGCGCG
CGCGGCGAAGTGATCCCGTCGCTGGCGCGCGAGGGCGGCCTGCCATCGACCCTGTGGGCGGGACCGGAGGAC
ATCAGCCGGGCCATGCGCAGTGGCGCCCAGCCGATCGAAGGCAGCGTGCGCCGGCAGTCGGTGAATCTGCGC
CTGGGCTTCGCCGGGGAGGATTTCGGTTATTGCATCGACCTCGGCCTGCCGGAGCCAAGCCAGAGCAAGTTC
GGTCTCGACCCGGTGATCAAGCGCGAATGCATCTGGGCCGGCCCGTTCCTGCGCCCGGCCAATGTCCTGGTC
GACCGTCGCGGGCCGTTGTTGCGCGCACGCGGCGGCGGCGGTCGCTGGGAAGTGGCGGCGCAGCACCTCGCC
ACCTTCGACAGCATGCTGGGCGCGGCGGTGGACCCGCGACAGGTGCCGGAACTGCTCGGCCTGCGCGAGCGG
ATCCGCTCCTGGCGCTTCTACGACCATTTCCGCAGCGACGCCGAGGCACCGGCGCGGCGCCCGCAGATCGGC
ACCCATACGCCGGTGCTGGGCGCCGACGGCGCCGACCTGGCCGCGGCCCTGCAGACCATCCGCGAGATCGGC
GATGCGGCGGCGCTGGACGAGGCGGTGGACGATGCCTTTCCCGGCAGCCGCCTGCACATCGACAACCCGGGA
GGGCGCTTCGAAGTGCTGATCGAGCAGCCCGGCCTGCTGCGGCCGCTGCGCACCGCGGAGCTGTCGGACGGC
ACCCTGCGCTACCTGCTGTGGATCGCCGCCCTGTTGTCGCCGCGGCCGCCGGCGCTGCTGGTGCTCAACGAA
CCGGAAACCAGCCTGCATCCCGACCTGCTGCCGGCCCTCGGGCGCCTGGTCGGCCAGGCCGCGCAGCACTCC
CAGGTGCTGGTGGTGTCGCACGCCGCGCGGCTTGTCGCGACGCTCGAAGAACACCCGGAATGCCATTCGCTG
GGGCTGGAGAAGGACTTCGGCGAGACCCGCATCCAGGGGCTGCGCGAGCTGGACCGGCCGGCCTGGTACTGG
CCGGTGCGCTGA
Translation:
MLTTLAVSNYRTLRDLVMPLRRLNLITGANGAGKSNVYRALRLLADSARGEVIPSLAREGGLPSTLWAGPED
ISRAMRSGAQPIEGSVRRQSVNLRLGFAGEDFGYCIDLGLPEPSQSKFGLDPVIKRECIWAGPFLRPANVLV
DRRGPLLRARGGGGRWEVAAQHLATFDSMLGAAVDPRQVPELLGLRERIRSWRFYDHFRSDAEAPARRPQIG
THTPVLGADGADLAAALQTIREIGDAAALDEAVDDAFPGSRLHIDNPGGRFEVLIEQPGLLRPLRTAELSDG
TLRYLLWIAALLSPRPPALLVLNEPETSLHPDLLPALGRLVGQAAQHSQVLVVSHAARLVATLEEHPECHSL
GLEKDFGETRIQGLRELDRPAWYWPVR*
AnnotationID:1567GeneID:1558
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 18:06:52
Gene Name:
Confidence Code:3
GeneProduct:possible ATPase
Cell Localization:()
Synonyms:PA0787
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4637, Predicted ATPase [General function prediction only]
       CD-Length = 373 residues,  99.7% aligned
       Score =  465 bits (1198), Expect = 9e-132






   
Genomic Context:






   
Comment:


















    ReferenceID:3119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20266




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1558
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2767
                           PA0787_tr
                           translation of PA0787
                           387
                           99.99
                           99.99
                           0
                           2004.0
     

     
     
86873
                           gb|AAG04176.1|AE004513_8
                           (AE004513) hypothetical protein PA0787 [Pseudomonas aeruginosa PAO1]
                           387
                           99.99
                           99.99
                           0
                           2004.0
     

     
     
86874
                           gb|AAN56773.1|AE015813_1
                           (AE015813) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           390
                           58.71
                           75.89
                           3
                           1174.0
     

     
     
86875
                           emb|CAE29968.1|
                           (BX572607) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           391
                           58.05
                           71.09
                           7
                           1155.0
     

     
     
86876
                           gb|AAN68134.1|AE016445_4
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           390
                           57.69
                           71.53
                           6
                           1076.0
     

     






      

          
GC ORFID: 44560How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0787Glimmer Score: 

          
Start: 154965Stop: 156128

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0787 translation of PA0787Homolog Bit Score 776.0

          
Other Homologs:  t_PA0787 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGACCACCCTGGCGGTGTCCAACTACCGCACCCTGCGCGACCTGGTGATGCCGCTGCGGCGCCTGAAC 
CTGATCACCGGCGCCAACGGCGCCGGCAAGTCCAACGTCTACCGGGCCTTGCGCCTGCTGGCGGACAGCGCG 
CGCGGCGAAGTGATCCCGTCGCTGGCGCGCGAGGGCGGCCTGCCATCGACCCTGTGGGCGGGACCGGAGGAC 
ATCAGCCGGGCCATGCGCAGTGGCGCCCAGCCGATCGAAGGCAGCGTGCGCCGGCAGTCGGTGAATCTGCGC 
CTGGGCTTCGCCGGGGAGGATTTCGGTTATTGCATCGACCTCGGCCTGCCGGAGCCAAGCCAGAGCAAGTTC 
GGTCTCGACCCGGTGATCAAGCGCGAATGCATCTGGGCCGGCCCGTTCCTGCGCCCGGCCAATGTCCTGGTC 
GACCGTCGCGGGCCGTTGTTGCGCGCACGCGGCGGCGGCGGTCGCTGGGAAGTGGCGGCGCAGCACCTCGCC 
ACCTTCGACAGCATGCTGGGCGCGGCGGTGGACCCGCGACAGGTGCCGGAACTGCTCGGCCTGCGCGAGCGG 
ATCCGCTCCTGGCGCTTCTACGACCATTTCCGCAGCGACGCCGAGGCACCGGCGCGGCGCCCGCAGATCGGC 
ACCCATACGCCGGTGCTGGGCGCCGACGGCGCCGACCTGGCCGCGGCCCTGCAGACCATCCGCGAGATCGGC 
GATGCGGCGGCGCTGGACGAGGCGGTGGACGATGCCTTTCCCGGCAGCCGCCTGCACATCGACAACCCGGGA 
GGGCGCTTCGAAGTGCTGATCGAGCAGCCCGGCCTGCTGCGGCCGCTGCGCACCGCGGAGCTGTCGGACGGC 
ACCCTGCGCTACCTGCTGTGGATCGCCGCCCTGTTGTCGCCGCGGCCGCCGGCGCTGCTGGTGCTCAACGAA 
CCGGAAACCAGCCTGCATCCCGACCTGCTGCCGGCCCTCGGGCGCCTGGTCGGCCAGGCCGCGCAGCACTCC 
CAGGTGCTGGTGGTGTCGCACGCCGCGCGGCTTGTCGCGACGCTCGAAGAACACCCGGAATGCCATTCGCTG 
GGGCTGGAGAAGGACTTCGGCGAGACCCGCATCCAGGGGCTGCGCGAGCTGGACCGGCCGGCCTGGTACTGG 
CCGGTGCGCTGA