ViewGene
Locus Name:
GeneID:
Location:

GeneID:1557
TrivialName: PA14_35680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35680
PAO1 Ortholog Locus:PA2236
Sequence Length:1188
Protein Length:395
Start: 3172559
Stop: 3171372
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05624.1|AE004649_15 (AE004649) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 394/395 (99%), Positives = 394/395 (99%)
Sequence:
ATGCGGATCGCCCTCCTCGCGCCCCTGCCGCCGGAAAAGAATGGCATCGCCGACTACGCCAGTCATTTCCGC
AACGCCCTGCAGGGTCTCGGCATCGAAGTAGCCACGCCGCTCGCCGGCGTGGCGGCCGACAGCGCGAATATC
GCCAGCCGGCTGGACAGCGTCGACTGGAACGCCTTCGACCTGGTCCATGCCGAACTCGGCGGCGGCCGCCTG
GGTGAGTTCATCGCCCTGCGCGAGCTGCGCAAGCGCTTCCCGCGCCTGCCGCTGAGCGCCACCGTGCACGAT
CCGGAGCGCATGGTCTGGCGCCGCGAGCGCCTGCCCTGGCCGCTGAACCTGCTGGAACGCCTGCCCTCTCCC
CTGCCCCAGGCCGCCGTGGTGCTCGCCGACCCGCTGACCCTGCGCGAAGAGCGTGCCGTGGCCCAGGGCCTG
ACGCGCCTGGTGACCCTCACCGGCCTGGGCGGCGAGTGCCTGGCCCGGCGGATGCGCCTGCCGCCCGGGCGG
GTCGAGGTGATCAACCACGGCAACCTGGAGATCGCCACGGTGCCGCTGCCGTCGCTGGACACCCTGCGCCTG
CTGTACTTCGGATTCATCTATCGCGGCAAAGGCATCGAGGACCTGCTCGAGGCCCTCGCCGACCTGTTCGCC
AGCGCGCCGGAGATGCGCCAGCGCGTGCGCCTGACCCTGGCCGGCGGCACCGCCGCGGAAATGGCCTTCGGC
GCCGGCGGCAACTACCTCGACCAGTTGAAGGCACAGATCGCCGAGCTTGGCCTGGCCGATGCCATCGACTGG
AACCTGAACCTGGCCGCCGCGGACATCCCACGTACCATCCAGGCCCACCACGTGATGGTCCTGCCGTACCGC
GAGTCGAAGAAACTCGGTCTGCTCGGCCAGCAGCGCGGCACCAGCGGCGCCCTGTCCTGGGCGGCAGCCTGC
GGGCGCGGCGCGATCACCTCGGACGCTCGCGCCTTCGCCGAGGAAGTCGCCAGCGGCAACGGCGCCATCTAC
CCTCAGGGAGACGTGGCAGCCCTCTCCGAACAGTTGTTGAACCTCGCTCGCGAACCCCGCCTGGCACAGGCC
TGGGCCGAGCGCGCCGGAGCGATCGGCCATGCGCGGACCTGGCCGCGCACCGCGCTGCGCTTCCAGGCACTG
TTCAACGACATGGTGGGAACCGTTCATGGCACGTAA
Translation:
MRIALLAPLPPEKNGIADYASHFRNALQGLGIEVATPLAGVAADSANIASRLDSVDWNAFDLVHAELGGGRL
GEFIALRELRKRFPRLPLSATVHDPERMVWRRERLPWPLNLLERLPSPLPQAAVVLADPLTLREERAVAQGL
TRLVTLTGLGGECLARRMRLPPGRVEVINHGNLEIATVPLPSLDTLRLLYFGFIYRGKGIEDLLEALADLFA
SAPEMRQRVRLTLAGGTAAEMAFGAGGNYLDQLKAQIAELGLADAIDWNLNLAAADIPRTIQAHHVMVLPYR
ESKKLGLLGQQRGTSGALSWAAACGRGAITSDARAFAEEVASGNGAIYPQGDVAALSEQLLNLAREPRLAQA
WAERAGAIGHARTWPRTALRFQALFNDMVGTVHGT*
AnnotationID:1566GeneID:1557
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:07
Gene Name:pslF
Confidence Code:4
GeneProduct:possible glycosyl transferase
Cell Localization:()
Synonyms:PA2236
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68345862|gb|AAY93468.1|  glycosyl transferase, group 1 family protein [Pseudomonas fluorescens Pf-5]
     Length=398
     Score =  506 bits (1302),  Expect = 7e-142
     Identities = 254/390 (65%), Positives = 293/390 (75%), Gaps = 0/390 (0%)

gi|63257241|gb|AAY38337.1|  Glycosyl transferase, group 1 [Pseudomonas syringae pv. syringae B728a]
     Length=392
     Score =  499 bits (1285),  Expect = 7e-140
     Identities = 245/385 (63%), Positives = 294/385 (76%), Gaps = 0/385 (0%)








 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].
             CD-Length = 381 residues,  99.5% aligned
             Score = 65.8 bits (158), Expect = 8e-12






   
Genomic Context:






   
Comment:


















    ReferenceID:3117




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20264




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1557
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2766
                           PA2236_tr
                           translation of PA2236
                           395
                           99.74
                           99.74
                           0
                           2006.0
     

     
     
86871
                           gb|AAG05624.1|AE004649_15
                           (AE004649) hypothetical protein PA2236 [Pseudomonas aeruginosa PAO1]
                           395
                           99.74
                           99.74
                           0
                           2006.0
     

     
     
86872
                           gb|AAO57008.1|
                           (AE016868) glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           395
                           62.53
                           73.92
                           3
                           1272.0
     

     






      

          
GC ORFID: 44559How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2236Glimmer Score: 

          
Start: 1781357Stop: 1782544

          
Length: 1188


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2236 translation of PA2236Homolog Bit Score 777.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6838 (ORF: BLASTX 499.0), t_PA2236 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGATCGCCCTCCTCGCGCCCCTGCCGCCGGAAAAGAATGGCATCGCCGACTACGCCAGTCATTTCCGC 
AACGCCCTGCAGGGTCTCGGCATCGAAGTAGCCACGCCGCTCGCCGGCGTGGCGGCCGACAGCGCGAATATC 
GCCAGCCGGCTGGACAGCGTCGACTGGAACGCCTTCGACCTGGTCCATGCCGAACTCGGCGGCGGCCGCCTG 
GGTGAGTTCATCGCCCTGCGCGAGCTGCGCAAGCGCTTCCCGCGCCTGCCGCTGAGCGCCACCGTGCACGAT 
CCGGAGCGCATGGTCTGGCGCCGCGAGCGCCTGCCCTGGCCGCTGAACCTGCTGGAACGCCTGCCCTCTCCC 
CTGCCCCAGGCCGCCGTGGTGCTCGCCGACCCGCTGACCCTGCGCGAAGAGCGTGCCGTGGCCCAGGGCCTG 
ACGCGCCTGGTGACCCTCACCGGCCTGGGCGGCGAGTGCCTGGCCCGGCGGATGCGCCTGCCGCCCGGGCGG 
GTCGAGGTGATCAACCACGGCAACCTGGAGATCGCCACGGTGCCGCTGCCGTCGCTGGACACCCTGCGCCTG 
CTGTACTTCGGATTCATCTATCGCGGCAAAGGCATCGAGGACCTGCTCGAGGCCCTCGCCGACCTGTTCGCC 
AGCGCGCCGGAGATGCGCCAGCGCGTGCGCCTGACCCTGGCCGGCGGCACCGCCGCGGAAATGGCCTTCGGC 
GCCGGCGGCAACTACCTCGACCAGTTGAAGGCACAGATCGCCGAGCTTGGCCTGGCCGATGCCATCGACTGG 
AACCTGAACCTGGCCGCCGCGGACATCCCACGTACCATCCAGGCCCACCACGTGATGGTCCTGCCGTACCGC 
GAGTCGAAGAAACTCGGTCTGCTCGGCCAGCAGCGCGGCACCAGCGGCGCCCTGTCCTGGGCGGCAGCCTGC 
GGGCGCGGCGCGATCACCTCGGACGCTCGCGCCTTCGCCGAGGAAGTCGCCAGCGGCAACGGCGCCATCTAC 
CCTCAGGGAGACGTGGCAGCCCTCTCCGAACAGTTGTTGAACCTCGCTCGCGAACCCCGCCTGGCACAGGCC 
TGGGCCGAGCGCGCCGGAGCGATCGGCCATGCGCGGACCTGGCCGCGCACCGCGCTGCGCTTCCAGGCACTG 
TTCAACGACATGGTGGGAACCGTTCATGGCACGTAA