ViewGene
Locus Name:
GeneID:
Location:

GeneID:1556
TrivialName: PA14_40020
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:40
LocusName:PA14_40020
PAO1 Ortholog Locus:
Sequence Length:1275
Protein Length:424
Start: 3565650
Stop: 3566924
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05284.1|AE004615_7 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 377/424 (88%), Positives = 380/424 (89%)
Sequence:
ATGCAAGATGAACTGTTCAAGACCCGATACTCCAAGTACGGATACGGCATCGACGTGCGCCGTACCTACAAG
GACCTGCCCTGCCAGCCGTTCTGGACCTGGGTCACCGGCAAGTCGCTGAACGACCGCCCGCCGCGACGGCCG
AAAGACACCCTGCTCAAGCCCTGGCAGCTCTACCTGCACATCAGTTGGGGCTACGCGGTGTTCTTCCTCGCG
GTGATCTACGGCCAGCAACTGCTCGCCTCGCAGCAGCCGCTGTGGCTGAAGTGCCTGCTGGGCGCGCTGATC
ATGTGCCTGGTGGTCAACCGCCAGCGCGGCTTCCTCCATACCTTCCACTACACCACCCATGGCGCCAGCCTG
GAGAACAAGGCGCTGGCCCGCTTCACCTGCAAGTGGATCCTGTCGATCCCGATCCTGCACACCCCGCGCGAC
GAGTACGTGAAGCTGCACGTGAACGAACACCACAGCGTGCGCACCTTCAATACCGAGCACGACGTCGACCTG
GTCTTCATGAAGCAGCACGGCTTCTACAAGGGCATGTCCGAGAGCGCCTTCTGGACCCGCCTGGTGCTCGCG
CCCTTCCATCCGGCGCGGATCCTCGAGCACCTGAAGTTCCGCTTCGACGTCAGCTTCGTCTCCGCCCCGCGC
CACGAGCGCGTCAGCCGGGCGCTCTACTGGGCCGCGCTGCTCGGCCTGGTGTACGCCAGCGGCTACCTGGAG
GCGTTCGCGCTGTTCTACCTGTTCCCGATCTTCATCCTCACCCAGTACTCGTCGTGGATCCAGCACGTCTCC
GAGCACCTCTGGTTCGCCCGCAACGAGCACGGCCTGCCGCGCTTCCTGCACTACGGCTCGCTGAGCTGGGGA
CGCTTCCTCGGCCGCCCCTACCCGGCCGACAAGCAGGGCCTGGCCTTCGCCCTGGCGTTCGTTCGCTGGAGC
CTGGGCGTGCTGCTGATCGACATCCCGCTgcgggtGtTCTCCTTCATGCAGgacCTGCcCAGccacgacTTC
caccaCccgCaagcCGGGGgtgaacttctGgcgCATCGcgcCggagCgcgcGGCCAACaAGgCGCGcCCctc
aaagttcGGCCcgatgaccaaaacctgGggcatgtgggaaaactTcctgaTcctgcgcaaCcacctctgcCG
CGGccagtcggacCcgTTCGgaTcGTCGaCTGGTACCgCgagaACCATGCCCGgcTCGCTCCGGAGacCGAT
GCCGCCAACCAGCCCCACACCAACCAACCCGCATCCCAGGCTACCGCCTGA
Translation:
MQDELFKTRYSKYGYGIDVRRTYKDLPCQPFWTWVTGKSLNDRPPRRPKDTLLKPWQLYLHISWGYAVFFLA
VIYGQQLLASQQPLWLKCLLGALIMCLVVNRQRGFLHTFHYTTHGASLENKALARFTCKWILSIPILHTPRD
EYVKLHVNEHHSVRTFNTEHDVDLVFMKQHGFYKGMSESAFWTRLVLAPFHPARILEHLKFRFDVSFVSAPR
HERVSRALYWAALLGLVYASGYLEAFALFYLFPIFILTQYSSWIQHVSEHLWFARNEHGLPRFLHYGSLSWG
RFLGRPYPADKQGLAFALAFVRWSLGVLLIDIPLRVFSFMQDLPSHDFHHPQAGGELLAHRAGARGQQGAPL
KVRPDDQNLGHVGKLPDPAQPPLPRPVGPVRIVDWYRENHARLAPETDAANQPHTNQPASQATA*
AnnotationID:1565GeneID:1556
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 09:09:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3115




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20262




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1556
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2765
                           PA1895_tr
                           translation of PA1895
                           434
                           87.09
                           88.24
                           20
                           2011.0
     

     
     
86870
                           gb|AAG05284.1|AE004615_7
                           (AE004615) hypothetical protein PA1895 [Pseudomonas aeruginosa PAO1]
                           434
                           87.09
                           88.24
                           20
                           2011.0
     

     






      

          
GC ORFID: 44558How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1895Glimmer Score: 

          
Start: 1388260Stop: 1386986

          
Length: 1275


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1895 translation of PA1895Homolog Bit Score 777.0

          
Other Homologs:  t_PA1895 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGATGAACTGTTCAAGACCCGATACTCCAAGTACGGATACGGCATCGACGTGCGCCGTACCTACAAG 
GACCTGCCCTGCCAGCCGTTCTGGACCTGGGTCACCGGCAAGTCGCTGAACGACCGCCCGCCGCGACGGCCG 
AAAGACACCCTGCTCAAGCCCTGGCAGCTCTACCTGCACATCAGTTGGGGCTACGCGGTGTTCTTCCTCGCG 
GTGATCTACGGCCAGCAACTGCTCGCCTCGCAGCAGCCGCTGTGGCTGAAGTGCCTGCTGGGCGCGCTGATC 
ATGTGCCTGGTGGTCAACCGCCAGCGCGGCTTCCTCCATACCTTCCACTACACCACCCATGGCGCCAGCCTG 
GAGAACAAGGCGCTGGCCCGCTTCACCTGCAAGTGGATCCTGTCGATCCCGATCCTGCACACCCCGCGCGAC 
GAGTACGTGAAGCTGCACGTGAACGAACACCACAGCGTGCGCACCTTCAATACCGAGCACGACGTCGACCTG 
GTCTTCATGAAGCAGCACGGCTTCTACAAGGGCATGTCCGAGAGCGCCTTCTGGACCCGCCTGGTGCTCGCG 
CCCTTCCATCCGGCGCGGATCCTCGAGCACCTGAAGTTCCGCTTCGACGTCAGCTTCGTCTCCGCCCCGCGC 
CACGAGCGCGTCAGCCGGGCGCTCTACTGGGCCGCGCTGCTCGGCCTGGTGTACGCCAGCGGCTACCTGGAG 
GCGTTCGCGCTGTTCTACCTGTTCCCGATCTTCATCCTCACCCAGTACTCGTCGTGGATCCAGCACGTCTCC 
GAGCACCTCTGGTTCGCCCGCAACGAGCACGGCCTGCCGCGCTTCCTGCACTACGGCTCGCTGAGCTGGGGA 
CGCTTCCTCGGCCGCCCCTACCCGGCCGACAAGCAGGGCCTGGCCTTCGCCCTGGCGTTCGTTCGCTGGAGC 
CTGGGCGTGCTGCTGATCGACATCCCGCTgcgggtGtTCTCCTTCATGCAGgacCTGCcCAGccacgacTTC 
caccaCccgCaagcCGGGGgtgaacttctGgcgCATCGcgcCggagCgcgcGGCCAACaAGgCGCGcCCctc 
aaagttcGGCCcgatgaccaaaacctgGggcatgtgggaaaactTcctgaTcctgcgcaaCcacctctgcCG 
CGGccagtcggacCcgTTCGgaTcGTCGaCTGGTACCgCgagaACCATGCCCGgcTCGCTCCGGAGacCGAT 
GCCGCCAACCAGCCCCACACCAACCAACCCGCATCCCAGGCTACCGCCTGA