ViewGene
Locus Name:
GeneID:
Location:

GeneID:1555
TrivialName: PA14_71000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71000
PAO1 Ortholog Locus:PA5376
Sequence Length:1179
Protein Length:392
Start: 6327508
Stop: 6326330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08761.1|AE004950_4 (AE004950) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 392/392 (100%), Positives = 392/392 (100%)
Sequence:
ATGACCGCGATCCGATTCGACCATGTGGACGTCATCTTCGGCACCCACACCAAGGAAGCCCTGAAGCTCCTC
GACCAGGGCCTCGGCCGCGCCGAGATCCTCAAGCGCACCGGCCAGGTGCTCGGCGTCGAGGACGCCTGCCTG
GACGTCAACCGCGGCGAGATCTGCGTGCTGATGGGACTTTCCGGCTCCGGTAAGTCGAGCCTGCTGCGCTGC
ATCAACGGCCTGAACAAGGTCAGCCGCGGCAAGCTGCTGATCGAGCACGAAGGTTCGCAGGTGGACATCGCC
AACTGCTCGCCGGCGACCCTCAAGGCCATGCGCACCAAGCGCATCGCCATGGTGTTCCAGAAGTTCGCCCTG
ATGCCCTGGCTGACGGTGGCCGAGAACGTCGGCTTCGGCCTGGAAATGCAGGGCCGTCCGGCCGCCGAGCGG
AAGAAGCTGATCGACGAGAAGCTCGAGCTGGTCGGTCTCTCGCAGTGGCGCGACAAGCGTCCCGACTCGCTC
TCCGGCGGCATGCAGCAGCGCGTCGGCCTGGCTCGCGCGCTGGCGATGGATGGCGACATCCTGCTGATGGAC
GAACCGTTCTCCGCCCTCGACCCGCTGATCCGCCAGCAATTGCAGGACGAACTGCTGGTGCTGCAACGGCAA
CTGCACAAGACCATCGTGTTCGTCAGCCACGACCTCGACGAGGCGCTGAAGATCGGCACCCGCATCGCGATC
ATGAAGGACGGCCGGATCATCCAGCACGGCAAGCCGGAAGAGATCGTGCTGAGCCCCGCGGACGACTACGTG
CGTACCTTCGTCGCCCATACCAACCCGCTCAACGTGCTGTGCGGCCAGAGTCTGATGCGTGGCCTCGACCAG
TGCATCCGGCAGAACGACGAGATCTGCTTCGACCAGGGCCGCGACTGCTGGATCGGTCTCAGCGAAGGCGAC
GTGCTCAAGGGCGCGCGCCAGGGCAGCAACGTCATCGACCTGCAACGCTGGCGCCAGGGCGACCCGGTGGAG
AAGCTGCGCCGCGAACCGACCCTGGTGGATGTCAGCATCCGTATGCGCGATGCCCTGCAGATTCGCTACCAG
ACCGGCCACAAGCTGGTTCTGCAGGAGCAGGACAGGGTGGTCGGGGTGCTCGGCGACAGCGAGCTGTACCAC
GCGCTGCTGGGCAAGAACCTCGGCTGA
Translation:
MTAIRFDHVDVIFGTHTKEALKLLDQGLGRAEILKRTGQVLGVEDACLDVNRGEICVLMGLSGSGKSSLLRC
INGLNKVSRGKLLIEHEGSQVDIANCSPATLKAMRTKRIAMVFQKFALMPWLTVAENVGFGLEMQGRPAAER
KKLIDEKLELVGLSQWRDKRPDSLSGGMQQRVGLARALAMDGDILLMDEPFSALDPLIRQQLQDELLVLQRQ
LHKTIVFVSHDLDEALKIGTRIAIMKDGRIIQHGKPEEIVLSPADDYVRTFVAHTNPLNVLCGQSLMRGLDQ
CIRQNDEICFDQGRDCWIGLSEGDVLKGARQGSNVIDLQRWRQGDPVEKLRREPTLVDVSIRMRDALQIRYQ
TGHKLVLQEQDRVVGVLGDSELYHALLGKNLG*
AnnotationID:1564GeneID:1555
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative lycine betaine/L-proline ABC transporter, ATP-binding subunit
Cell Localization:()
Synonyms:PA5376
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4175,COG3842,COG1126,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65925.1|AE016220_7 (AE016775) glycine betaine/L-proline ABC transporter, ATP-binding
           subunit [Pseudomonas putida KT2440]
          Length = 392

 Score =  594 bits (1531), Expect = e-169
 Identities = 298/392 (76%), Positives = 331/392 (84%)

>gb|AAO54006.1| (AE016857) glycine/betaine/L-proline ABC transporter, ATP-binding
           subunit [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 392

 Score =  588 bits (1517), Expect = e-167
 Identities = 291/392 (74%), Positives = 337/392 (85%)

>dbj|BAC62452.1| (AP005087) putative ATP-binding component of ABC transporter
           [Vibrio parahaemolyticus]
          Length = 394

 Score =  425 bits (1092), Expect = e-118
 Identities = 225/399 (56%), Positives = 287/399 (71%), Gaps = 24/399 (6%)






 
Structural Features:
COG4175, ProV, ABC-type proline/glycine betaine transport system, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 386 residues,  99.7% aligned
Score =  477 bits (1228), Expect = 1e-135
Identities = 192/392 (48%), Positives = 242/392 (61%), Gaps = 9/392 (2%)

COG3842, PotA, ABC-type spermidine/putrescine transport systems, 
ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  96.6% aligned
Score =  228 bits (582), Expect = 9e-61
Identities = 119/350 (34%), Positives = 175/350 (50%), Gaps = 25/350 (7%)

COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component 
[Amino acid transport and metabolism]
CD-Length = 240 residues,  96.7% aligned
Score =  196 bits (500), Expect = 4e-51
Identities = 90/240 (37%), Positives = 137/240 (57%), Gaps = 9/240 (3%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues,  94.9% aligned
Score =  184 bits (469), Expect = 1e-47
Identities = 83/216 (38%), Positives = 127/216 (58%), Gaps = 11/216 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20260




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34725




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1555_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1555
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2758
                           PA5376_tr
                           translation of PA5376
                           392
                           99.99
                           99.99
                           0
                           2008.0
     

     
     
86589
                           gb|AAG08761.1|AE004950_4
                           (AE004950) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           392
                           99.99
                           99.99
                           0
                           2008.0
     

     
     
86590
                           gb|AAN65925.1|AE016220_7
                           (AE016775) glycine betaine/L-proline ABC transporter, ATP-binding subunit [Pseudomonas putida KT2440]
                           392
                           76.02
                           84.43
                           0
                           1531.0
     

     
     
86591
                           gb|AAO54006.1|
                           (AE016857) glycine/betaine/L-proline ABC transporter, ATP-binding subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           392
                           74.23
                           85.96
                           0
                           1517.0
     

     
     
86592
                           dbj|BAC62452.1|
                           (AP005087) putative ATP-binding component of ABC transporter [Vibrio parahaemolyticus]
                           407
                           55.28
                           70.51
                           28
                           1105.0
     

     






      

          
GC ORFID: 44557How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5376Glimmer Score: 

          
Start: 5591197Stop: 5590019

          
Length: 1179


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5376 translation of PA5376Homolog Bit Score 778.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene6963 (ORF: BLASTX 176.0), t_PA0326 (ORF: BLASTX 168.0), t_PA0206 (ORF: BLASTX 158.0), t_PA5376 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCGATCCGATTCGACCATGTGGACGTCATCTTCGGCACCCACACCAAGGAAGCCCTGAAGCTCCTC 
GACCAGGGCCTCGGCCGCGCCGAGATCCTCAAGCGCACCGGCCAGGTGCTCGGCGTCGAGGACGCCTGCCTG 
GACGTCAACCGCGGCGAGATCTGCGTGCTGATGGGACTTTCCGGCTCCGGTAAGTCGAGCCTGCTGCGCTGC 
ATCAACGGCCTGAACAAGGTCAGCCGCGGCAAGCTGCTGATCGAGCACGAAGGTTCGCAGGTGGACATCGCC 
AACTGCTCGCCGGCGACCCTCAAGGCCATGCGCACCAAGCGCATCGCCATGGTGTTCCAGAAGTTCGCCCTG 
ATGCCCTGGCTGACGGTGGCCGAGAACGTCGGCTTCGGCCTGGAAATGCAGGGCCGTCCGGCCGCCGAGCGG 
AAGAAGCTGATCGACGAGAAGCTCGAGCTGGTCGGTCTCTCGCAGTGGCGCGACAAGCGTCCCGACTCGCTC 
TCCGGCGGCATGCAGCAGCGCGTCGGCCTGGCTCGCGCGCTGGCGATGGATGGCGACATCCTGCTGATGGAC 
GAACCGTTCTCCGCCCTCGACCCGCTGATCCGCCAGCAATTGCAGGACGAACTGCTGGTGCTGCAACGGCAA 
CTGCACAAGACCATCGTGTTCGTCAGCCACGACCTCGACGAGGCGCTGAAGATCGGCACCCGCATCGCGATC 
ATGAAGGACGGCCGGATCATCCAGCACGGCAAGCCGGAAGAGATCGTGCTGAGCCCCGCGGACGACTACGTG 
CGTACCTTCGTCGCCCATACCAACCCGCTCAACGTGCTGTGCGGCCAGAGTCTGATGCGTGGCCTCGACCAG 
TGCATCCGGCAGAACGACGAGATCTGCTTCGACCAGGGCCGCGACTGCTGGATCGGTCTCAGCGAAGGCGAC 
GTGCTCAAGGGCGCGCGCCAGGGCAGCAACGTCATCGACCTGCAACGCTGGCGCCAGGGCGACCCGGTGGAG 
AAGCTGCGCCGCGAACCGACCCTGGTGGATGTCAGCATCCGTATGCGCGATGCCCTGCAGATTCGCTACCAG 
ACCGGCCACAAGCTGGTTCTGCAGGAGCAGGACAGGGTGGTCGGGGTGCTCGGCGACAGCGAGCTGTACCAC 
GCGCTGCTGGGCAAGAACCTCGGCTGA