ViewGene
Locus Name:
GeneID:
Location:

GeneID:1554
TrivialName: PA14_68770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68770
PAO1 Ortholog Locus:PA5206
Sequence Length:1155
Protein Length:384
Start: 6133832
Stop: 6132678
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08591.1|AE004933_7 (AE004933) acetylornithine deacetylase [Pseudomonas aeruginosa PAO1]
Identities = 381/384 (99%), Positives = 383/384 (99%)
Sequence:
ATGCCGTTGCCGTCTCTGAAAGACCAGTTCGGCGCGCTGATCGCCGCGTCTTCCGTCAGTTGCACCCAGCCC
GAGCTGGACCAGACCAACCGCCCGGTGGTCGACCTGCTGGCCTCCTGGCTGGGCGATCTAGGCTTCCGCTAC
GAGATCCGGGAAGTCTCGCCGGGCAAGTTCAACCTGCTGGCCAGCTACGGCAGCGGTCCCGGCGGGCTGGTG
CTGGCCGGCCACACCGATACCGTGCCCTACGACGAAGCGCTGTGGAGCAGCGATCCGCTGCGCCTGGACGAG
CGCGACGGCCGCTGGTACGGCCTCGGCAGTTGCGACATGAAGGGCTTCTTCCCGCTGGCCATCGAGGCCTTG
CTGCCGCTGCTCGACCAGCCGTTCCGCCAGCCGCTGATGATCCTCGCCACCTGCGACGAGGAAAGCTCGATG
GCCGGCGCCCGTGCCCTCGCCGAAAGCGGGCGGCCGCTGGGGCGCGCCACGGTGATCGGCGAGCCGACCAAC
CTGCGGCCGATCCGCCTGCACAAGGGGGTGATGATGGAGCGCATCGAGATTCTCGGGCAGAGCGGCCATTCG
TCCGATCCGAACCTCGGGCGCAGCGCCCTGGAGGCGATGCACGCGACCATCGGCGAGCTGATGGCGCTGCGC
GGGGAATGGCAGCAGGCCTGGAACAACCCGCAGTTCAGCGTGCCCCAGCCGACCCTGAACTTCGGTTGCATC
CACGGCGGCGACAATCCCAACCGCATCTGCGGCCAGTGTTCGCTGGAATTCGACCTGCGCCCGCTACCCGGC
ATGCAGCCCGAGCAGTTGCGCGAGGCGATCCGCCAGCGCCTGCGGCCGCTGGCCGAACGGCACCAGGTGAGC
ATCGACTACCAGCCGCTGTTCCCTGCCGTGCCGCCGTTCGAACAGGCGCAGGACAGCGAACTGGTACGCGTC
GCCGAACGCCTGACCGGGCATCGCGCCGAGGCCGTGGCGTTCGGTACCGAGGCGCCGTACTTCCAGCGCCTG
GGCAGCGAGACCCTGGTCCTCGGCGCCGGCGACATCGCCTGTGCCCACCAGCCCGACGAGCACCTGGAACTG
GCGCGTATCGAACCGATGGTCGGCGTGCTGCGCCGGCTGATCCAGCATTACTGCCTGACGCCCGCCGCCGAC
TGA
Translation:
MPLPSLKDQFGALIAASSVSCTQPELDQTNRPVVDLLASWLGDLGFRYEIREVSPGKFNLLASYGSGPGGLV
LAGHTDTVPYDEALWSSDPLRLDERDGRWYGLGSCDMKGFFPLAIEALLPLLDQPFRQPLMILATCDEESSM
AGARALAESGRPLGRATVIGEPTNLRPIRLHKGVMMERIEILGQSGHSSDPNLGRSALEAMHATIGELMALR
GEWQQAWNNPQFSVPQPTLNFGCIHGGDNPNRICGQCSLEFDLRPLPGMQPEQLREAIRQRLRPLAERHQVS
IDYQPLFPAVPPFEQAQDSELVRVAERLTGHRAEAVAFGTEAPYFQRLGSETLVLGAGDIACAHQPDEHLEL
ARIEPMVGVLRRLIQHYCLTPAAD*
AnnotationID:1563GeneID:1554
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:44
Gene Name:argE
Confidence Code:2
GeneProduct:acetylornithine deacetylase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:N-acetylornithinase
Functional Category Confidence Code:5
COGs:COG0624
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17029




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5206_CDS.cgi


    		




 
URL:

















    ReferenceID:20258




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1554
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2757
                           PA5206_tr
                           translation of PA5206
                           384
                           99.21
                           99.73
                           0
                           2008.0
     

     
     
86560
                           gb|AAG08591.1|AE004933_7
                           (AE004933) acetylornithine deacetylase [Pseudomonas aeruginosa PAO1]
                           384
                           99.21
                           99.73
                           0
                           2008.0
     

     
     
86561
                           gb|AAQ82443.1|
                           (AY374326) ArgE [Pseudomonas syringae pv. syringae]
                           384
                           77.86
                           86.97
                           2
                           1615.0
     

     
     
86562
                           gb|AAO53868.1|
                           (AE016857) acetylornithine deacetylase [Pseudomonas syringae pv. tomato str. DC3000]
                           384
                           77.34
                           86.71
                           2
                           1599.0
     

     
     
86563
                           gb|AAN70751.1|AE016719_2
                           (AE016793) acetylornithine deacetylase [Pseudomonas putida KT2440]
                           384
                           75.26
                           88.54
                           4
                           1587.0
     

     






      

          
GC ORFID: 44556How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5206Glimmer Score: 

          
Start: 5397518Stop: 5396364

          
Length: 1155


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5206 translation of PA5206Homolog Bit Score 778.0

          
Other Homologs:  t_PA5206 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTTGCCGTCTCTGAAAGACCAGTTCGGCGCGCTGATCGCCGCGTCTTCCGTCAGTTGCACCCAGCCC 
GAGCTGGACCAGACCAACCGCCCGGTGGTCGACCTGCTGGCCTCCTGGCTGGGCGATCTAGGCTTCCGCTAC 
GAGATCCGGGAAGTCTCGCCGGGCAAGTTCAACCTGCTGGCCAGCTACGGCAGCGGTCCCGGCGGGCTGGTG 
CTGGCCGGCCACACCGATACCGTGCCCTACGACGAAGCGCTGTGGAGCAGCGATCCGCTGCGCCTGGACGAG 
CGCGACGGCCGCTGGTACGGCCTCGGCAGTTGCGACATGAAGGGCTTCTTCCCGCTGGCCATCGAGGCCTTG 
CTGCCGCTGCTCGACCAGCCGTTCCGCCAGCCGCTGATGATCCTCGCCACCTGCGACGAGGAAAGCTCGATG 
GCCGGCGCCCGTGCCCTCGCCGAAAGCGGGCGGCCGCTGGGGCGCGCCACGGTGATCGGCGAGCCGACCAAC 
CTGCGGCCGATCCGCCTGCACAAGGGGGTGATGATGGAGCGCATCGAGATTCTCGGGCAGAGCGGCCATTCG 
TCCGATCCGAACCTCGGGCGCAGCGCCCTGGAGGCGATGCACGCGACCATCGGCGAGCTGATGGCGCTGCGC 
GGGGAATGGCAGCAGGCCTGGAACAACCCGCAGTTCAGCGTGCCCCAGCCGACCCTGAACTTCGGTTGCATC 
CACGGCGGCGACAATCCCAACCGCATCTGCGGCCAGTGTTCGCTGGAATTCGACCTGCGCCCGCTACCCGGC 
ATGCAGCCCGAGCAGTTGCGCGAGGCGATCCGCCAGCGCCTGCGGCCGCTGGCCGAACGGCACCAGGTGAGC 
ATCGACTACCAGCCGCTGTTCCCTGCCGTGCCGCCGTTCGAACAGGCGCAGGACAGCGAACTGGTACGCGTC 
GCCGAACGCCTGACCGGGCATCGCGCCGAGGCCGTGGCGTTCGGTACCGAGGCGCCGTACTTCCAGCGCCTG 
GGCAGCGAGACCCTGGTCCTCGGCGCCGGCGACATCGCCTGTGCCCACCAGCCCGACGAGCACCTGGAACTG 
GCGCGTATCGAACCGATGGTCGGCGTGCTGCGCCGGCTGATCCAGCATTACTGCCTGACGCCCGCCGCCGAC 
TGA