ViewGene

Locus Name:
GeneID:
Location:

GeneID:1550
TrivialName: PA14_72320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72320
PAO1 Ortholog Locus:PA5478
Sequence Length:1230
Protein Length:409
Start: 6442989
Stop: 6441760
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08863.1|AE004960_6 (AE004960) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 408/409 (99%), Positives = 408/409 (99%)
Sequence:
ATGCTGAACGGCTTGTGGTTGGGTTTTTTCCTGGTGGCGGCGGCGAGCGCGCTGGCGCGCTGGTTGATCGGC
GGCGATGCGACGGTGTTCGCGGCGATGGTGGAGAGCCTGTTCGCCATGGCCAAGCTGGCGGTCGAGGTGATG
GTCCTGCTGTTCGGCACCCTGACGCTCTGGCTCGGCTTCCTGCGCATCGCCGAGAAGGCCGGTCTGGTGGAG
CGCCTGGCGGTGCTGCTCGGTCCGCTGTTCCGTCGGCTGATGCCGGAAGTGCCGCCGGGGCATCCGGCGATC
GGCCTGATCACCCTGAACTTCGCCGCCAATGGCCTGGGTTTGGACAACGCCGCCACGCCGATCGGCCTGAAG
GCGATGAAGGCGTTGCAGGAGCTCAATCCCAGCAGCACCACCGCGAGCAATGCGCAGATCCTCTTCCTGGTG
CTCAACGCCTCGTCCCTGACCCTGCTGCCGGTGACCATCTTCATGTACCGCGCGCAGCAGGGCGCGGCCGAT
CCGACCCTGGTATTCCTGCCGATCCTCCTGGCCACCAGCGCCTCGACCCTGGCCGGCCTGCTGTCGGTGGCG
CTGATGCAGCGCCTGCGCCTGTGGGACCCGGTGGTGCTGGCCTACCTGATCCCCGGCGCGTTGCTGCTGGCC
GGCTTCATGGCGGTGCTCGGCACGCTCTCGGCCACCGCGCTGGCGCAGCTGTCCTCGCTGTTGGGCAACCTG
ACGCTGTTCAGCCTGATCGTGCTGTTCCTGATCGTCGGCGCGCTGAAGAAGGTGCCGGTCTACGAGAGCTTC
GTGGAGGGGGCGAAGGAAGGTTTCGACGTCGCCAGGAACCTGTTGCCGTACCTGGTCGCAATGCTTTGCGCG
GTTGGCGTGTTGCGCGCCTCCGGGGCGCTGGAAGTGGTACTCGGCGGGATACGCTGGGCGGTCGAGGGGCTG
GGCTGGGACAGCCGCTTCGTCGAGGCGCTGCCCACCGCGCTGGTCAAGCCGTTCTCCGGCAGCGCGGCGCGG
GCGATGCTGCTGGAGACCATGCAGACCCACGGCGTCGACAGTTTCCCGGCGCTGGTCGCCGCCACCGTGCAG
GGCAGTACCGAGACCACCTTCTACGTGCTCGCCGTCTATTTCGGCTCGGTCGGCCTGCAGCGCGCGCGCCAC
GCGGTGGGCTGCGCGCTGACCGCGGACCTGGCCGGGGTCATCGCCTCCATCGGCGTGTGCTACTGGTTCTTC
GCCTGA
Translation:
MLNGLWLGFFLVAAASALARWLIGGDATVFAAMVESLFAMAKLAVEVMVLLFGTLTLWLGFLRIAEKAGLVE
RLAVLLGPLFRRLMPEVPPGHPAIGLITLNFAANGLGLDNAATPIGLKAMKALQELNPSSTTASNAQILFLV
LNASSLTLLPVTIFMYRAQQGAADPTLVFLPILLATSASTLAGLLSVALMQRLRLWDPVVLAYLIPGALLLA
GFMAVLGTLSATALAQLSSLLGNLTLFSLIVLFLIVGALKKVPVYESFVEGAKEGFDVARNLLPYLVAMLCA
VGVLRASGALEVVLGGIRWAVEGLGWDSRFVEALPTALVKPFSGSAARAMLLETMQTHGVDSFPALVAATVQ
GSTETTFYVLAVYFGSVGLQRARHAVGCALTADLAGVIASIGVCYWFFA*
AnnotationID:1559GeneID:1550
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 07:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative spore maturation protein
Cell Localization:()
Synonyms:PA5478
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2715,pfam04291
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN55636.1|AE015702_6 (AE015702) spore maturation protein A-related protein [Shewanella
           oneidensis MR-1]
          Length = 408

 Score =  462 bits (1188), Expect = e-129
 Identities = 244/410 (59%), Positives = 308/410 (75%), Gaps = 5/410 (1%)

>emb|CAD13980.1| (AL646059) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 415

 Score =  353 bits (905), Expect = 1e-96
 Identities = 189/420 (45%), Positives = 273/420 (65%), Gaps = 21/420 (5%)
Structural Features:
COG2715, SpmA, Uncharacterized membrane protein, 
required for spore maturation in B.subtilis.
CD-Length = 206 residues, 100.0% aligned
Score =  247 bits (632), Expect = 2e-66
Identities = 117/215 (54%), Positives = 154/215 (71%), Gaps = 9/215 (4%)

pfam04291, Spore_mat_A, Spore maturation protein A. 
CD-Length = 191 residues, 100.0% aligned
Score =  241 bits (616), Expect = 1e-64
Identities = 107/198 (54%), Positives = 139/198 (70%), Gaps = 7/198 (3%)
Genomic Context:
Comment:
ReferenceID:3103
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20250
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33231
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1550_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1550

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2750 PA5478_tr translation of PA5478 409 99.75 99.75 0 2011.0
86320 gb|AAG08863.1|AE004960_6 (AE004960) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 409 99.75 99.75 0 2011.0
86321 gb|AAN65772.1|AE016203_5 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440] 409 84.35 92.66 0 1746.0
86322 gb|AAO53675.1| (AE016856) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 413 81.59 90.07 4 1701.0
86324 emb|CAE43599.1| (BX640421) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 409 78.23 87.28 0 1604.0
GC ORFID: 44552How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5478Glimmer Score:
Start: 5706678Stop: 5705449
Length: 1230
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5478 translation of PA5478Homolog Bit Score 779.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3006 (ORF: BLASTX 659.0), t_PA5478 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGAACGGCTTGTGGTTGGGTTTTTTCCTGGTGGCGGCGGCGAGCGCGCTGGCGCGCTGGTTGATCGGC
GGCGATGCGACGGTGTTCGCGGCGATGGTGGAGAGCCTGTTCGCCATGGCCAAGCTGGCGGTCGAGGTGATG
GTCCTGCTGTTCGGCACCCTGACGCTCTGGCTCGGCTTCCTGCGCATCGCCGAGAAGGCCGGTCTGGTGGAG
CGCCTGGCGGTGCTGCTCGGTCCGCTGTTCCGTCGGCTGATGCCGGAAGTGCCGCCGGGGCATCCGGCGATC
GGCCTGATCACCCTGAACTTCGCCGCCAATGGCCTGGGTTTGGACAACGCCGCCACGCCGATCGGCCTGAAG
GCGATGAAGGCGTTGCAGGAGCTCAATCCCAGCAGCACCACCGCGAGCAATGCGCAGATCCTCTTCCTGGTG
CTCAACGCCTCGTCCCTGACCCTGCTGCCGGTGACCATCTTCATGTACCGCGCGCAGCAGGGCGCGGCCGAT
CCGACCCTGGTATTCCTGCCGATCCTCCTGGCCACCAGCGCCTCGACCCTGGCCGGCCTGCTGTCGGTGGCG
CTGATGCAGCGCCTGCGCCTGTGGGACCCGGTGGTGCTGGCCTACCTGATCCCCGGCGCGTTGCTGCTGGCC
GGCTTCATGGCGGTGCTCGGCACGCTCTCGGCCACCGCGCTGGCGCAGCTGTCCTCGCTGTTGGGCAACCTG
ACGCTGTTCAGCCTGATCGTGCTGTTCCTGATCGTCGGCGCGCTGAAGAAGGTGCCGGTCTACGAGAGCTTC
GTGGAGGGGGCGAAGGAAGGTTTCGACGTCGCCAGGAACCTGTTGCCGTACCTGGTCGCAATGCTTTGCGCG
GTTGGCGTGTTGCGCGCCTCCGGGGCGCTGGAAGTGGTACTCGGCGGGATACGCTGGGCGGTCGAGGGGCTG
GGCTGGGACAGCCGCTTCGTCGAGGCGCTGCCCACCGCGCTGGTCAAGCCGTTCTCCGGCAGCGCGGCGCGG
GCGATGCTGCTGGAGACCATGCAGACCCACGGCGTCGACAGTTTCCCGGCGCTGGTCGCCGCCACCGTGCAG
GGCAGTACCGAGACCACCTTCTACGTGCTCGCCGTCTATTTCGGCTCGGTCGGCCTGCAGCGCGCGCGCCAC
GCGGTGGGCTGCGCGCTGACCGCGGACCTGGCCGGGGTCATCGCCTCCATCGGCGTGTGCTACTGGTTCTTC
GCCTGA