ViewGene

Locus Name:
GeneID:
Location:

GeneID:1549
TrivialName: PA14_68930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68930
PAO1 Ortholog Locus:PA5219
Sequence Length:1194
Protein Length:397
Start: 6148877
Stop: 6150070
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08604.1|AE004935_1 (AE004935) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 394/397 (99%), Positives = 396/397 (99%)
Sequence:
ATGAATTCGTCCCAGGGTTTCCCCCGCCTCGCGCTGTTTCTCTGCGGTTGCGCTGCGTTCCTCAATCTCTAT
ACCACCCAGGGCATCTTCGACGAACTGGCGGCGAGCTTCCACATCAGCGCCCATCAATCGAACTGGAGCATC
ACCGCCACCACCCTGGCGGTGGCCCTCGCCGCGCCCTTCGTCGGCCGGCTCAGCGGCGGCCGCGAGCGCAGC
CGGGTGATCGCCTTCGCCGCCAGCCTGCTCTGCGTGCCCATGCTGCTGGCCGCCCATGCCGGCAGCTTCGCC
GCCTTCCTGCTCTGGCGCTTCGCCGAGGGGATGCTGATTCCCCTGCTGTTCGCCAGCAGCGTGGCCTACATC
GGCGAGCGCTGGAGCGGCGGCGCGGTCATCGAGCTGACCAGCCTCTATGTCGCCGGGACCATCCTCGGCGGC
TTCGCCGGACGCTTCCTCACCGGCCTGCTGACCGAGGAATGGGATTGGCGCGTCGCCTTCCGGATCCTCGCC
GGGCTGACCCTGCTCATCGCCGTCGCCATCCGCGCGCTGCTCCCTGCCAATTCTGGCAGGCACTCGCCCGCA
CCCGGGAAACGCCCCTTAGTATCCCGTGAACTGTTCCGGGCTCCGCTGCTGTCGTCCTACGCGGTGGGGTTC
TGTGTCCTCTTTTCCCAGGTCGCCATGTTCACCTATATCGGCATCCATCTCAGCCGTCCGCCGTACAGCCTG
GACACCGCTCAGCTCGGCTCGATCTACGCGGTGTTCCTCCTCGCCCTGCTGGTGATTCCCGCCAGCGGCCGC
CTGGCCCGCGCCCGCCCGCACCGCCAGTTGCTGCTGGGCGCATCGCTGCTGGGCGTCTGCGGCTCGCTGCTG
ACCCTGGCGCCGGGCCTGCCGACGATTCTCGTCGGCCTGGCTCTCAGCGCCACCGGCGTGTTCCTCGCACAG
TCCACGGTCAACGCTTTCACCGCCAGCAACGCCGGGACCGACAAGGCCGGCGCCGTCGGCCTCTACCTGACC
TGCTACTACGCCGGCGGCAGCCTCGGCGCGGTGCTGCCGGCGCCATTCTGGGACCGCTGGGGCTGGCCGGGC
TGCCTGGGCCTGATCCTCCTGGCCCAGTTGCTGCCGTTGCTGCTGACCCGCTACGGCTGGTCCGCACCACAG
GCCGAACGCGCGGCCCTGCGCGCGTCGCAAGGAAGACCGTAA
Translation:
MNSSQGFPRLALFLCGCAAFLNLYTTQGIFDELAASFHISAHQSNWSITATTLAVALAAPFVGRLSGGRERS
RVIAFAASLLCVPMLLAAHAGSFAAFLLWRFAEGMLIPLLFASSVAYIGERWSGGAVIELTSLYVAGTILGG
FAGRFLTGLLTEEWDWRVAFRILAGLTLLIAVAIRALLPANSGRHSPAPGKRPLVSRELFRAPLLSSYAVGF
CVLFSQVAMFTYIGIHLSRPPYSLDTAQLGSIYAVFLLALLVIPASGRLARARPHRQLLLGASLLGVCGSLL
TLAPGLPTILVGLALSATGVFLAQSTVNAFTASNAGTDKAGAVGLYLTCYYAGGSLGAVLPAPFWDRWGWPG
CLGLILLAQLLPLLLTRYGWSAPQAERAALRASQGRP*
AnnotationID:1558GeneID:1549
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:47
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA5219
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):carbohydrate transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
CD-Length = 394 residues,  93.1% aligned
Score =  103 bits (258), Expect = 4e-23
Identities = 101/369 (27%), Positives = 143/369 (38%), Gaps = 4/369 (1%)
Genomic Context:
Comment:
ReferenceID:3101
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20248
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34840
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1549_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1549

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2749 PA5219_tr translation of PA5219 397 99.24 99.74 0 2011.0
86319 gb|AAG08604.1|AE004935_1 (AE004935) hypothetical protein PA5219 [Pseudomonas aeruginosa PAO1] 397 99.24 99.74 0 2011.0
GC ORFID: 44551How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5219Glimmer Score:
Start: 5412563Stop: 5413756
Length: 1194
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5219 translation of PA5219Homolog Bit Score 779.0
Other Homologs: t_PA5219 (ORF: GLIMMER)
GC ORF Sequence
ATGAATTCGTCCCAGGGTTTCCCCCGCCTCGCGCTGTTTCTCTGCGGTTGCGCTGCGTTCCTCAATCTCTAT
ACCACCCAGGGCATCTTCGACGAACTGGCGGCGAGCTTCCACATCAGCGCCCATCAATCGAACTGGAGCATC
ACCGCCACCACCCTGGCGGTGGCCCTCGCCGCGCCCTTCGTCGGCCGGCTCAGCGGCGGCCGCGAGCGCAGC
CGGGTGATCGCCTTCGCCGCCAGCCTGCTCTGCGTGCCCATGCTGCTGGCCGCCCATGCCGGCAGCTTCGCC
GCCTTCCTGCTCTGGCGCTTCGCCGAGGGGATGCTGATTCCCCTGCTGTTCGCCAGCAGCGTGGCCTACATC
GGCGAGCGCTGGAGCGGCGGCGCGGTCATCGAGCTGACCAGCCTCTATGTCGCCGGGACCATCCTCGGCGGC
TTCGCCGGACGCTTCCTCACCGGCCTGCTGACCGAGGAATGGGATTGGCGCGTCGCCTTCCGGATCCTCGCC
GGGCTGACCCTGCTCATCGCCGTCGCCATCCGCGCGCTGCTCCCTGCCAATTCTGGCAGGCACTCGCCCGCA
CCCGGGAAACGCCCCTTAGTATCCCGTGAACTGTTCCGGGCTCCGCTGCTGTCGTCCTACGCGGTGGGGTTC
TGTGTCCTCTTTTCCCAGGTCGCCATGTTCACCTATATCGGCATCCATCTCAGCCGTCCGCCGTACAGCCTG
GACACCGCTCAGCTCGGCTCGATCTACGCGGTGTTCCTCCTCGCCCTGCTGGTGATTCCCGCCAGCGGCCGC
CTGGCCCGCGCCCGCCCGCACCGCCAGTTGCTGCTGGGCGCATCGCTGCTGGGCGTCTGCGGCTCGCTGCTG
ACCCTGGCGCCGGGCCTGCCGACGATTCTCGTCGGCCTGGCTCTCAGCGCCACCGGCGTGTTCCTCGCACAG
TCCACGGTCAACGCTTTCACCGCCAGCAACGCCGGGACCGACAAGGCCGGCGCCGTCGGCCTCTACCTGACC
TGCTACTACGCCGGCGGCAGCCTCGGCGCGGTGCTGCCGGCGCCATTCTGGGACCGCTGGGGCTGGCCGGGC
TGCCTGGGCCTGATCCTCCTGGCCCAGTTGCTGCCGTTGCTGCTGACCCGCTACGGCTGGTCCGCACCACAG
GCCGAACGCGCGGCCCTGCGCGCGTCGCAAGGAAGACCGTAA